RNA–Protein interactions for RNA: ENST00000409958.6

VSX1-204, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,305 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-204ENST00000409958 LENG9Q96B70 501 aa23.58■■□□□ 1.36
VSX1-204ENST00000409958 CCDC194A0A1B0GVG4 234 aa23.57■■□□□ 1.36
VSX1-204ENST00000409958 DHX15O43143 795 aaKnown RBP23.57■■□□□ 1.36
VSX1-204ENST00000409958 ACTR2P61160 394 aa23.57■■□□□ 1.36
VSX1-204ENST00000409958 CTAGE1Q96RT6 745 aa23.57■■□□□ 1.36
VSX1-204ENST00000409958 ZNF577Q9BSK1 485 aa23.57■■□□□ 1.36
VSX1-204ENST00000409958 BRMS1Q9HCU9 246 aa23.57■■□□□ 1.36
VSX1-204ENST00000409958 TBC1D22BQ9NU19 505 aa23.57■■□□□ 1.36
VSX1-204ENST00000409958 CYP3A7-CYP3A51PA0A087WV96 503 aa23.56■■□□□ 1.36
VSX1-204ENST00000409958 LGR5O75473 907 aa23.56■■□□□ 1.36
VSX1-204ENST00000409958 CYP3A7P24462 503 aa23.56■■□□□ 1.36
VSX1-204ENST00000409958 KRT2P35908 639 aa23.56■■□□□ 1.36
VSX1-204ENST00000409958 HMGN5P82970 282 aaKnown RBP23.56■■□□□ 1.36
VSX1-204ENST00000409958 PPIGQ13427 754 aaKnown RBP eCLIP23.56■■□□□ 1.36
VSX1-204ENST00000409958 TRIM29Q14134 588 aa23.56■■□□□ 1.36
VSX1-204ENST00000409958 UMODL1Q5DID0 1318 aa23.56■■□□□ 1.36
VSX1-204ENST00000409958 MOXD1Q6UVY6 613 aa23.56■■□□□ 1.36
VSX1-204ENST00000409958 EMSYQ7Z589 1322 aa23.56■■□□□ 1.36
VSX1-204ENST00000409958 OXER1Q8TDS5 423 aa23.56■■□□□ 1.36
VSX1-204ENST00000409958 SMARCAD1Q9H4L7 1026 aa23.56■■□□□ 1.36
VSX1-204ENST00000409958 PITPNM1O00562 1244 aa23.55■■□□□ 1.36
VSX1-204ENST00000409958 ATG7O95352 703 aa23.55■■□□□ 1.36
VSX1-204ENST00000409958 MMP1P03956 469 aa23.55■■□□□ 1.36
VSX1-204ENST00000409958 SMIM10L2AP0DMW4 78 aa23.55■■□□□ 1.36
VSX1-204ENST00000409958 SMIM10L2BP0DMW5 78 aa23.55■■□□□ 1.36
VSX1-204ENST00000409958 HOXC8P31273 242 aa23.55■■□□□ 1.36
VSX1-204ENST00000409958 MCM2P49736 904 aa23.55■■□□□ 1.36
VSX1-204ENST00000409958 INF2Q27J81 1249 aa23.55■■□□□ 1.36
VSX1-204ENST00000409958 Q4G0T1 1027 aa23.55■■□□□ 1.36
VSX1-204ENST00000409958 GLG1Q92896 1179 aa23.55■■□□□ 1.36
VSX1-204ENST00000409958 WNT8AQ9H1J5 351 aa23.55■■□□□ 1.36
VSX1-204ENST00000409958 ERAP1Q9NZ08 941 aa23.55■■□□□ 1.36
VSX1-204ENST00000409958 C17orf102A2RUQ5 167 aa23.54■■□□□ 1.36
VSX1-204ENST00000409958 DDX39AO00148 427 aaKnown RBP23.54■■□□□ 1.36
VSX1-204ENST00000409958 CSF2RAP15509 400 aa23.54■■□□□ 1.36
VSX1-204ENST00000409958 EPHB4P54760 987 aa23.54■■□□□ 1.36
VSX1-204ENST00000409958 BFSP2Q13515 415 aa23.54■■□□□ 1.36
VSX1-204ENST00000409958 KRT40Q6A162 431 aa23.54■■□□□ 1.36
VSX1-204ENST00000409958 CCDC155Q8N6L0 562 aa23.54■■□□□ 1.36
VSX1-204ENST00000409958 CAGE1Q8TC20 777 aa23.54■■□□□ 1.36
VSX1-204ENST00000409958 MBOAT7Q96N66 472 aa23.54■■□□□ 1.36
VSX1-204ENST00000409958 SOX1O00570 391 aaPredicted RBP23.53■■□□□ 1.36
VSX1-204ENST00000409958 MSH4O15457 936 aa23.53■■□□□ 1.36
VSX1-204ENST00000409958 TDP2O95551 362 aa23.53■■□□□ 1.36
VSX1-204ENST00000409958 CCNE2O96020 404 aa23.53■■□□□ 1.36
VSX1-204ENST00000409958 CCL23P55773 120 aa23.53■■□□□ 1.36
VSX1-204ENST00000409958 PTK7Q13308 1070 aa23.53■■□□□ 1.36
VSX1-204ENST00000409958 HIC1Q14526 733 aa23.53■■□□□ 1.36
VSX1-204ENST00000409958 PIK3AP1Q6ZUJ8 805 aa23.53■■□□□ 1.36
VSX1-204ENST00000409958 TNFRSF25Q93038 417 aa23.53■■□□□ 1.36
VSX1-204ENST00000409958 PCYT2Q99447 389 aa23.53■■□□□ 1.36
VSX1-204ENST00000409958 RNPEPQ9H4A4 650 aa23.53■■□□□ 1.36
VSX1-204ENST00000409958 AZI2Q9H6S1 392 aa23.53■■□□□ 1.36
VSX1-204ENST00000409958 CD2BP2O95400 341 aaKnown RBP23.52■■□□□ 1.36
VSX1-204ENST00000409958 GNAT1P11488 350 aa23.52■■□□□ 1.36
VSX1-204ENST00000409958 ZNF200P98182 395 aaPredicted RBP23.52■■□□□ 1.36
VSX1-204ENST00000409958 KRT76Q01546 638 aa23.52■■□□□ 1.36
VSX1-204ENST00000409958 RBL2Q08999 1139 aa23.52■■□□□ 1.36
VSX1-204ENST00000409958 NR5A1Q13285 461 aa23.52■■□□□ 1.36
VSX1-204ENST00000409958 SHHQ15465 462 aa23.52■■□□□ 1.36
VSX1-204ENST00000409958 LRIT3Q3SXY7 679 aa23.52■■□□□ 1.36
VSX1-204ENST00000409958 C9orf50Q5SZB4 431 aa23.52■■□□□ 1.36
VSX1-204ENST00000409958 ZNF746Q6NUN9 644 aaPredicted RBP23.52■■□□□ 1.36
VSX1-204ENST00000409958 ABHD15Q6UXT9 468 aa23.52■■□□□ 1.36
VSX1-204ENST00000409958 PLPPR4Q7Z2D5 763 aa23.52■■□□□ 1.36
VSX1-204ENST00000409958 NEK8Q86SG6 692 aa23.52■■□□□ 1.36
VSX1-204ENST00000409958 RETREG2Q8NC44 543 aa23.52■■□□□ 1.36
VSX1-204ENST00000409958 DHX38Q92620 1227 aaKnown RBP23.52■■□□□ 1.36
VSX1-204ENST00000409958 TMX3Q96JJ7 454 aa23.52■■□□□ 1.36
VSX1-204ENST00000409958 UIMC1Q96RL1 719 aa23.52■■□□□ 1.36
VSX1-204ENST00000409958 RIT2Q99578 217 aa23.52■■□□□ 1.36
VSX1-204ENST00000409958 TCEAL9Q9UHQ7 104 aa23.52■■□□□ 1.36
VSX1-204ENST00000409958 LAMA3Q16787 3333 aa23.52■■□□□ 1.36
VSX1-204ENST00000409958 NRCAMQ92823 1304 aa23.51■■□□□ 1.35
VSX1-204ENST00000409958 IGKV6D-21A0A0A0MT36 114 aa23.51■■□□□ 1.35
VSX1-204ENST00000409958 SLC34A2O95436 690 aa23.51■■□□□ 1.35
VSX1-204ENST00000409958 GCFC2P16383 781 aaKnown RBP23.51■■□□□ 1.35
VSX1-204ENST00000409958 STAT5BP51692 787 aa23.51■■□□□ 1.35
VSX1-204ENST00000409958 FOSBP53539 338 aa23.51■■□□□ 1.35
VSX1-204ENST00000409958 LETM2Q2VYF4 491 aa23.51■■□□□ 1.35
VSX1-204ENST00000409958 SMAP1Q8IYB5 467 aaPredicted RBP23.51■■□□□ 1.35
VSX1-204ENST00000409958 DIS3L2Q8IYB7 885 aaKnown RBP23.51■■□□□ 1.35
VSX1-204ENST00000409958 FAM184AQ8NB25 1140 aa23.51■■□□□ 1.35
VSX1-204ENST00000409958 SLC5A5Q92911 643 aa23.51■■□□□ 1.35
VSX1-204ENST00000409958 ATP6V0A1Q93050 837 aa23.51■■□□□ 1.35
VSX1-204ENST00000409958 C8orf76Q96K31 380 aa23.51■■□□□ 1.35
VSX1-204ENST00000409958 NAP1L4Q99733 375 aaKnown RBP23.51■■□□□ 1.35
VSX1-204ENST00000409958 IL23AQ9NPF7 189 aa23.51■■□□□ 1.35
VSX1-204ENST00000409958 TRIP12Q14669 1992 aaPredicted RBP23.51■■□□□ 1.35
VSX1-204ENST00000409958 BTBD18B2RXH4 712 aa23.5■■□□□ 1.35
VSX1-204ENST00000409958 MARK3P27448 753 aa23.5■■□□□ 1.35
VSX1-204ENST00000409958 EARS2Q5JPH6 523 aaKnown RBP23.5■■□□□ 1.35
VSX1-204ENST00000409958 PPP4R3AQ6IN85 833 aa23.5■■□□□ 1.35
VSX1-204ENST00000409958 MIS18BP1Q6P0N0 1132 aa23.5■■□□□ 1.35
VSX1-204ENST00000409958 C16orf59Q7L2K0 433 aa23.5■■□□□ 1.35
VSX1-204ENST00000409958 SERINC5Q86VE9 423 aa23.5■■□□□ 1.35
VSX1-204ENST00000409958 AFAP1L1Q8TED9 768 aa23.5■■□□□ 1.35
VSX1-204ENST00000409958 SCLYQ96I15 445 aa23.5■■□□□ 1.35
VSX1-204ENST00000409958 SETD4Q9NVD3 440 aa23.5■■□□□ 1.35
VSX1-204ENST00000409958 DDX25Q9UHL0 483 aaKnown RBP23.5■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms