RNA–Protein interactions for RNA: ENST00000400540.5

LINC00544-201, long intergenic non-protein coding RNA 544, humanhuman

TSL 5 BASIC

Gene LINC00544, Length 1,031 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00544-201ENST00000400540 TIGD5Q53EQ6 642 aa13.76□□□□□ -0.21
LINC00544-201ENST00000400540 RALYLQ86SE5 291 aaKnown RBP13.76□□□□□ -0.21
LINC00544-201ENST00000400540 BANK1Q8NDB2 785 aa13.76□□□□□ -0.21
LINC00544-201ENST00000400540 SAMD11Q96NU1 681 aa13.76□□□□□ -0.21
LINC00544-201ENST00000400540 U3KPZ7 1027 aaPredicted RBP13.76□□□□□ -0.21
LINC00544-201ENST00000400540 WDR81Q562E7 1941 aa13.75□□□□□ -0.21
LINC00544-201ENST00000400540 MEIS2O14770 477 aa13.75□□□□□ -0.21
LINC00544-201ENST00000400540 STAM2O75886 525 aa13.75□□□□□ -0.21
LINC00544-201ENST00000400540 CHRNA1P02708 482 aa13.75□□□□□ -0.21
LINC00544-201ENST00000400540 LINC00271P0C7V0 271 aa13.75□□□□□ -0.21
LINC00544-201ENST00000400540 GHRP10912 638 aa13.75□□□□□ -0.21
LINC00544-201ENST00000400540 GNAT1P11488 350 aa13.75□□□□□ -0.21
LINC00544-201ENST00000400540 CHMLP26374 656 aa13.75□□□□□ -0.21
LINC00544-201ENST00000400540 COL9A3Q14050 684 aaPredicted RBP13.75□□□□□ -0.21
LINC00544-201ENST00000400540 PTPROQ16827 1216 aa13.75□□□□□ -0.21
LINC00544-201ENST00000400540 FAM26DQ5JW98 314 aa13.75□□□□□ -0.21
LINC00544-201ENST00000400540 PCNX4Q63HM2 1172 aa13.75□□□□□ -0.21
LINC00544-201ENST00000400540 EP400NLQ6ZTU2 488 aa13.75□□□□□ -0.21
LINC00544-201ENST00000400540 CATIPQ7Z7H3 387 aa13.75□□□□□ -0.21
LINC00544-201ENST00000400540 MB21D2Q8IYB1 491 aaPredicted RBP13.75□□□□□ -0.21
LINC00544-201ENST00000400540 NCOA7Q8NI08 942 aa13.75□□□□□ -0.21
LINC00544-201ENST00000400540 SMARCC2Q8TAQ2 1214 aa13.75□□□□□ -0.21
LINC00544-201ENST00000400540 IGDCC4Q8TDY8 1250 aa13.75□□□□□ -0.21
LINC00544-201ENST00000400540 ZNF215Q9UL58 517 aaPredicted RBP13.75□□□□□ -0.21
LINC00544-201ENST00000400540 FNDC1Q4ZHG4 1894 aaPredicted RBP13.75□□□□□ -0.21
LINC00544-201ENST00000400540 ATP9AO75110 1047 aa13.74□□□□□ -0.21
LINC00544-201ENST00000400540 CSPG5O95196 566 aa13.74□□□□□ -0.21
LINC00544-201ENST00000400540 PLEKHA8P1O95397 391 aa13.74□□□□□ -0.21
LINC00544-201ENST00000400540 MARK3P27448 753 aa13.74□□□□□ -0.21
LINC00544-201ENST00000400540 CTNNB1P35222 781 aa13.74□□□□□ -0.21
LINC00544-201ENST00000400540 TCF7P36402 384 aaPredicted RBP13.74□□□□□ -0.21
LINC00544-201ENST00000400540 MGAT3Q09327 533 aa13.74□□□□□ -0.21
LINC00544-201ENST00000400540 SART3Q15020 963 aaKnown RBP13.74□□□□□ -0.21
LINC00544-201ENST00000400540 ZNF654Q8IZM8 581 aa13.74□□□□□ -0.21
LINC00544-201ENST00000400540 CMTR1Q8N1G2 835 aaKnown RBP13.74□□□□□ -0.21
LINC00544-201ENST00000400540 APBB2Q92870 758 aa13.74□□□□□ -0.21
LINC00544-201ENST00000400540 ZBTB10Q96DT7 871 aa13.74□□□□□ -0.21
LINC00544-201ENST00000400540 PABPC5Q96DU9 382 aaKnown RBP13.74□□□□□ -0.21
LINC00544-201ENST00000400540 SPZ1Q9BXG8 430 aa13.74□□□□□ -0.21
LINC00544-201ENST00000400540 NSUN3Q9H649 340 aaKnown RBP13.74□□□□□ -0.21
LINC00544-201ENST00000400540 RC3H2Q9HBD1 1191 aaKnown RBP13.74□□□□□ -0.21
LINC00544-201ENST00000400540 LY9Q9HBG7 655 aa13.74□□□□□ -0.21
LINC00544-201ENST00000400540 PKD2L1Q9P0L9 805 aa13.74□□□□□ -0.21
LINC00544-201ENST00000400540 MUC6Q6W4X9 2439 aa13.74□□□□□ -0.21
LINC00544-201ENST00000400540 EVPLQ92817 2033 aa13.73□□□□□ -0.21
LINC00544-201ENST00000400540 ADGRA3Q8IWK6 1321 aa13.73□□□□□ -0.21
LINC00544-201ENST00000400540 PIK3CDO00329 1044 aa13.73□□□□□ -0.21
LINC00544-201ENST00000400540 KCNA2P16389 499 aa13.73□□□□□ -0.21
LINC00544-201ENST00000400540 RXRAP19793 462 aa13.73□□□□□ -0.21
LINC00544-201ENST00000400540 LPIN1Q14693 890 aa13.73□□□□□ -0.21
LINC00544-201ENST00000400540 COL19A1Q14993 1142 aa13.73□□□□□ -0.21
LINC00544-201ENST00000400540 FIBCD1Q8N539 461 aa13.73□□□□□ -0.21
LINC00544-201ENST00000400540 RRP36Q96EU6 259 aaKnown RBP13.73□□□□□ -0.21
LINC00544-201ENST00000400540 IL17RAQ96F46 866 aa13.73□□□□□ -0.21
LINC00544-201ENST00000400540 SENP7Q9BQF6 1050 aa13.73□□□□□ -0.21
LINC00544-201ENST00000400540 EHMT1Q9H9B1 1298 aa13.73□□□□□ -0.21
LINC00544-201ENST00000400540 CLDND1Q9NY35 253 aa13.73□□□□□ -0.21
LINC00544-201ENST00000400540 ARIH1Q9Y4X5 557 aaPredicted RBP13.73□□□□□ -0.21
LINC00544-201ENST00000400540 NRCAMQ92823 1304 aa13.72□□□□□ -0.21
LINC00544-201ENST00000400540 GSTTP1A0A1W2PQM5 241 aa13.72□□□□□ -0.21
LINC00544-201ENST00000400540 hCG_1642624A0A1W2PR95 340 aa13.72□□□□□ -0.21
LINC00544-201ENST00000400540 PRR33A8MZF0 331 aa13.72□□□□□ -0.21
LINC00544-201ENST00000400540 GRM6O15303 877 aa13.72□□□□□ -0.21
LINC00544-201ENST00000400540 SGSM2O43147 1006 aa13.72□□□□□ -0.21
LINC00544-201ENST00000400540 ITGB5P18084 799 aa13.72□□□□□ -0.21
LINC00544-201ENST00000400540 LTBRP36941 435 aa13.72□□□□□ -0.21
LINC00544-201ENST00000400540 PPFIA1Q13136 1202 aa13.72□□□□□ -0.21
LINC00544-201ENST00000400540 CLUL1Q15846 466 aa13.72□□□□□ -0.21
LINC00544-201ENST00000400540 UBE2SQ16763 222 aa13.72□□□□□ -0.21
LINC00544-201ENST00000400540 RPAINQ86UA6 219 aa13.72□□□□□ -0.21
LINC00544-201ENST00000400540 NLRX1Q86UT6 975 aa13.72□□□□□ -0.21
LINC00544-201ENST00000400540 RAB11FIP4Q86YS3 637 aa13.72□□□□□ -0.21
LINC00544-201ENST00000400540 SRBD1Q8N5C6 995 aaKnown RBP13.72□□□□□ -0.21
LINC00544-201ENST00000400540 CTCFLQ8NI51 663 aaPredicted RBP13.72□□□□□ -0.21
LINC00544-201ENST00000400540 RUFY2Q8WXA3 655 aa13.72□□□□□ -0.21
LINC00544-201ENST00000400540 LINC01599Q8WXQ3 324 aa13.72□□□□□ -0.21
LINC00544-201ENST00000400540 CUL5Q93034 780 aa13.72□□□□□ -0.21
LINC00544-201ENST00000400540 C5orf67F2Z3F1 127 aa13.71□□□□□ -0.21
LINC00544-201ENST00000400540 DDAH1O94760 285 aa13.71□□□□□ -0.21
LINC00544-201ENST00000400540 GTF2F1P35269 517 aaKnown RBP eCLIP13.71□□□□□ -0.21
LINC00544-201ENST00000400540 ZP2Q05996 745 aa13.71□□□□□ -0.21
LINC00544-201ENST00000400540 DLX2Q07687 328 aaPredicted RBP13.71□□□□□ -0.21
LINC00544-201ENST00000400540 HYAL1Q12794 435 aa13.71□□□□□ -0.21
LINC00544-201ENST00000400540 GRIK4Q16099 956 aa13.71□□□□□ -0.21
LINC00544-201ENST00000400540 PUS10Q3MIT2 529 aaKnown RBP13.71□□□□□ -0.21
LINC00544-201ENST00000400540 MARCH8Q5T0T0 291 aa13.71□□□□□ -0.21
LINC00544-201ENST00000400540 DNAJB3Q8WWF6 145 aa13.71□□□□□ -0.21
LINC00544-201ENST00000400540 SEC63Q9UGP8 760 aaKnown RBP13.71□□□□□ -0.21
LINC00544-201ENST00000400540 TUBE1Q9UJT0 475 aa13.71□□□□□ -0.21
LINC00544-201ENST00000400540 RBM8AQ9Y5S9 174 aaKnown RBP13.71□□□□□ -0.21
LINC00544-201ENST00000400540 CDY2AQ9Y6F7 541 aa13.71□□□□□ -0.21
LINC00544-201ENST00000400540 USP34Q70CQ2 3546 aa13.7□□□□□ -0.22
LINC00544-201ENST00000400540 POTEB3A0JP26 581 aa13.7□□□□□ -0.22
LINC00544-201ENST00000400540 ENPP3O14638 875 aa13.7□□□□□ -0.22
LINC00544-201ENST00000400540 PRC1O43663 620 aa13.7□□□□□ -0.22
LINC00544-201ENST00000400540 BMPR1AP36894 532 aa13.7□□□□□ -0.22
LINC00544-201ENST00000400540 IGBP1P78318 339 aa13.7□□□□□ -0.22
LINC00544-201ENST00000400540 FBXO47Q5MNV8 452 aa13.7□□□□□ -0.22
LINC00544-201ENST00000400540 TAF2Q6P1X5 1199 aa13.7□□□□□ -0.22
LINC00544-201ENST00000400540 XRRA1Q6P2D8 792 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms