RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 RAPGEF2Q9Y4G8 1499 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 CCDC163A0A0D9SF12 145 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 MAPK9P45984 424 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 RBBP7Q16576 425 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 RPAINQ86UA6 219 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 DPF3Q92784 378 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 RPRD1AQ96P16 312 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-202ENST00000375405 TRPC7Q9HCX4 862 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 DNAJC11Q9NVH1 559 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 FGFR1OP2Q9NVK5 253 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 KLHL28Q9NXS3 571 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 PCDHB9Q9Y5E1 797 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 MIA2Q96PC5 1412 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 TK2O00142 265 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 RGS10O43665 173 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 CCNT1O60563 726 aaKnown RBP4.99□□□□□ -1.61
SCN1A-202ENST00000375405 RASSF9O75901 435 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 SRGAP2CP0DJJ0 459 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 COPB2P35606 906 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 GSTA3Q16772 222 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 SV2CQ496J9 727 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 FAM102BQ5T8I3 360 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 PHLDB3Q6NSJ2 640 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 ERAP2Q6P179 960 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 KIAA0408Q6ZU52 694 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 C7orf31Q8N865 590 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 TADA1Q96BN2 335 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 FAF2Q96CS3 445 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 LRRC39Q96DD0 335 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 KDM4CQ9H3R0 1056 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 MPP6Q9NZW5 540 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 USP16Q9Y5T5 823 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 SESN1Q9Y6P5 492 aa4.99□□□□□ -1.61
SCN1A-202ENST00000375405 KIF28PB7ZC32 967 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 HPCAP84074 193 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 DDI2Q5TDH0 399 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 HAUS3Q68CZ6 603 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 SPOPLQ6IQ16 392 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 KLC3Q6P597 504 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 BZW1Q7L1Q6 419 aaKnown RBP4.98□□□□□ -1.61
SCN1A-202ENST00000375405 AGGF1Q8N302 714 aaeCLIP4.98□□□□□ -1.61
SCN1A-202ENST00000375405 MYCT1Q8N699 235 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 FAR1Q8WVX9 515 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 HSPH1Q92598 858 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 TUBGCP3Q96CW5 907 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 PLEKHA8Q96JA3 519 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 DNAJC1Q96KC8 554 aaKnown RBP4.98□□□□□ -1.61
SCN1A-202ENST00000375405 CLCC1Q96S66 551 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 EFHD1Q9BUP0 239 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 SBNO2Q9Y2G9 1366 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 ERBB3P21860 1342 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 GOLGA8JA6NMD2 632 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 C16orf96A6NNT2 1141 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 GOLGA8KD6RF30 607 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 CALUO43852 315 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-202ENST00000375405 NCF2P19878 526 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-202ENST00000375405 KRT73Q86Y46 540 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 SETD6Q8TBK2 473 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 CDKL2Q92772 493 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 FAM149B1Q96BN6 582 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 EGFL8Q99944 293 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 TBC1D2Q9BYX2 928 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 ZBTB3Q9H5J0 574 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 POLR1DQ9Y2S0 133 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 MRFAP1Q9Y605 127 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 DKC1O60832 514 aaKnown RBP eCLIP4.98□□□□□ -1.611e-7■■■■■ 34.3
SCN1A-202ENST00000375405 TDP2O95551 362 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 ACTN1P12814 892 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 SSTR3P32745 418 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-202ENST00000375405 MAPKAPK2P49137 400 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 RAB14P61106 215 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 YWHAEP62258 255 aaKnown RBP4.98□□□□□ -1.61
SCN1A-202ENST00000375405 MYO1EQ12965 1108 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 GTF2H3Q13889 308 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 ARID5BQ14865 1188 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 RRS1Q15050 365 aaKnown RBP4.98□□□□□ -1.61
SCN1A-202ENST00000375405 ARMCX5Q6P1M9 558 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 TRIM42Q8IWZ5 723 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 DHX58Q96C10 678 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 KCNS3Q9BQ31 491 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 DSCC1Q9BVC3 393 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 ZMYND12Q9H0C1 365 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 RERGLQ9H628 205 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 CCDC177Q9NQR7 707 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-202ENST00000375405 SLC4A4Q9Y6R1 1079 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 C5orf58C9J3I9 102 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 KDM1AO60341 852 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 NMIQ13287 307 aaPredicted RBP4.98□□□□□ -1.61
SCN1A-202ENST00000375405 DHX34Q14147 1143 aaKnown RBP4.98□□□□□ -1.61
SCN1A-202ENST00000375405 TAF13Q15543 124 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 MAPRE1Q15691 268 aaKnown RBP4.98□□□□□ -1.61
SCN1A-202ENST00000375405 COLEC12Q5KU26 742 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 CERS3Q8IU89 383 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 STAG2Q8N3U4 1231 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 NKD1Q969G9 470 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 DDX50Q9BQ39 737 aaKnown RBP4.98□□□□□ -1.61
SCN1A-202ENST00000375405 EMILIN2Q9BXX0 1053 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 STN1Q9H668 368 aaKnown RBP4.98□□□□□ -1.61
SCN1A-202ENST00000375405 LRRC40Q9H9A6 602 aa4.98□□□□□ -1.61
SCN1A-202ENST00000375405 AKAP7Q9P0M2 348 aaPredicted RBP4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms