RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 CCDC13Q8IYE1 715 aa23.2■■□□□ 1.3
UPF3A-202ENST00000375299 LRRC45Q96CN5 670 aa23.2■■□□□ 1.3
UPF3A-202ENST00000375299 AIPL1Q9NZN9 384 aa23.2■■□□□ 1.3
UPF3A-202ENST00000375299 ADAMTS1Q9UHI8 967 aa23.2■■□□□ 1.3
UPF3A-202ENST00000375299 BTNL10A8MVZ5 291 aa23.2■■□□□ 1.3
UPF3A-202ENST00000375299 H0YGN5 161 aa23.2■■□□□ 1.3
UPF3A-202ENST00000375299 KCNK3O14649 394 aa23.2■■□□□ 1.3
UPF3A-202ENST00000375299 ARID5AQ03989 594 aa23.2■■□□□ 1.3
UPF3A-202ENST00000375299 PDIA5Q14554 519 aa23.2■■□□□ 1.3
UPF3A-202ENST00000375299 UAP1Q16222 522 aaPredicted RBP23.2■■□□□ 1.3
UPF3A-202ENST00000375299 FAM133AQ8N9E0 248 aa23.2■■□□□ 1.3
UPF3A-202ENST00000375299 C3orf20Q8ND61 904 aa23.2■■□□□ 1.3
UPF3A-202ENST00000375299 PIGSQ96S52 555 aa23.2■■□□□ 1.3
UPF3A-202ENST00000375299 CENPHQ9H3R5 247 aa23.2■■□□□ 1.3
UPF3A-202ENST00000375299 NFS1Q9Y697 457 aa23.2■■□□□ 1.3
UPF3A-202ENST00000375299 TDP2O95551 362 aa23.19■■□□□ 1.3
UPF3A-202ENST00000375299 USP17L2Q6R6M4 530 aa23.19■■□□□ 1.3
UPF3A-202ENST00000375299 SCFD2Q8WU76 684 aa23.19■■□□□ 1.3
UPF3A-202ENST00000375299 PBKQ96KB5 322 aa23.19■■□□□ 1.3
UPF3A-202ENST00000375299 UTP18Q9Y5J1 556 aaKnown RBP eCLIP23.19■■□□□ 1.3
UPF3A-202ENST00000375299 ZNF831Q5JPB2 1677 aa23.19■■□□□ 1.3
UPF3A-202ENST00000375299 KIF4AO95239 1232 aa23.19■■□□□ 1.3
UPF3A-202ENST00000375299 GNA14O95837 355 aa23.19■■□□□ 1.3
UPF3A-202ENST00000375299 MARSP56192 900 aaKnown RBP23.19■■□□□ 1.3
UPF3A-202ENST00000375299 TRIM59Q8IWR1 403 aa23.19■■□□□ 1.3
UPF3A-202ENST00000375299 DNAJC19Q96DA6 116 aa23.19■■□□□ 1.3
UPF3A-202ENST00000375299 CXorf56Q9H5V9 222 aa23.19■■□□□ 1.3
UPF3A-202ENST00000375299 VAT1LQ9HCJ6 419 aa23.19■■□□□ 1.3
UPF3A-202ENST00000375299 SLC12A6Q9UHW9 1150 aa23.19■■□□□ 1.3
UPF3A-202ENST00000375299 RASSF9O75901 435 aa23.18■■□□□ 1.3
UPF3A-202ENST00000375299 SMARCA1P28370 1054 aa23.18■■□□□ 1.3
UPF3A-202ENST00000375299 FAM26FQ5R3K3 315 aa23.18■■□□□ 1.3
UPF3A-202ENST00000375299 ANKRD2Q9GZV1 360 aa23.18■■□□□ 1.3
UPF3A-202ENST00000375299 KLC4Q9NSK0 619 aa23.18■■□□□ 1.3
UPF3A-202ENST00000375299 KIF13BQ9NQT8 1826 aa23.18■■□□□ 1.3
UPF3A-202ENST00000375299 SNED1Q8TER0 1413 aa23.18■■□□□ 1.3
UPF3A-202ENST00000375299 GMNCA6NCL1 334 aa23.18■■□□□ 1.3
UPF3A-202ENST00000375299 BHMG1C9JSJ3 638 aaPredicted RBP23.18■■□□□ 1.3
UPF3A-202ENST00000375299 CHUKO15111 745 aa23.18■■□□□ 1.3
UPF3A-202ENST00000375299 USP11P51784 963 aa23.18■■□□□ 1.3
UPF3A-202ENST00000375299 ZNF844Q08AG5 666 aa23.18■■□□□ 1.3
UPF3A-202ENST00000375299 BIRC3Q13489 604 aa23.18■■□□□ 1.3
UPF3A-202ENST00000375299 SEPT2Q15019 361 aa23.18■■□□□ 1.3
UPF3A-202ENST00000375299 ENOX2Q16206 610 aaKnown RBP23.18■■□□□ 1.3
UPF3A-202ENST00000375299 OR2W6PQ8NHA6 318 aa23.18■■□□□ 1.3
UPF3A-202ENST00000375299 ACTRT1Q8TDG2 376 aa23.18■■□□□ 1.3
UPF3A-202ENST00000375299 JPH2Q9BR39 696 aaPredicted RBP23.18■■□□□ 1.3
UPF3A-202ENST00000375299 GANQ9H2C0 597 aa23.18■■□□□ 1.3
UPF3A-202ENST00000375299 ACTR5Q9H9F9 607 aaPredicted RBP23.18■■□□□ 1.3
UPF3A-202ENST00000375299 CTNNA1P35221 906 aaKnown RBP23.17■■□□□ 1.3
UPF3A-202ENST00000375299 RUFY4Q6ZNE9 571 aa23.17■■□□□ 1.3
UPF3A-202ENST00000375299 CCDC121Q6ZUS5 278 aa23.17■■□□□ 1.3
UPF3A-202ENST00000375299 NLRP3Q96P20 1036 aa23.17■■□□□ 1.3
UPF3A-202ENST00000375299 RGL2O15211 777 aa23.16■■□□□ 1.3
UPF3A-202ENST00000375299 C10orf76Q5T2E6 689 aa23.16■■□□□ 1.3
UPF3A-202ENST00000375299 TGFBRAP1Q8WUH2 860 aa23.16■■□□□ 1.3
UPF3A-202ENST00000375299 CALR3Q96L12 384 aaKnown RBP23.16■■□□□ 1.3
UPF3A-202ENST00000375299 CD248Q9HCU0 757 aa23.16■■□□□ 1.3
UPF3A-202ENST00000375299 PANK4Q9NVE7 773 aa23.16■■□□□ 1.3
UPF3A-202ENST00000375299 CNTNAP4Q9C0A0 1308 aa23.16■■□□□ 1.3
UPF3A-202ENST00000375299 TRAPPC3O43617 180 aa23.16■■□□□ 1.3
UPF3A-202ENST00000375299 EDIL3O43854 480 aa23.16■■□□□ 1.3
UPF3A-202ENST00000375299 NYXQ9GZU5 481 aa23.16■■□□□ 1.3
UPF3A-202ENST00000375299 NEUROG2Q9H2A3 272 aa23.16■■□□□ 1.3
UPF3A-202ENST00000375299 SLC40A1Q9NP59 571 aa23.16■■□□□ 1.3
UPF3A-202ENST00000375299 CEP104O60308 925 aa23.15■■□□□ 1.3
UPF3A-202ENST00000375299 LDHBP07195 334 aaKnown RBP23.15■■□□□ 1.3
UPF3A-202ENST00000375299 ECM1Q16610 540 aa23.15■■□□□ 1.3
UPF3A-202ENST00000375299 AGBL2Q5U5Z8 902 aa23.15■■□□□ 1.3
UPF3A-202ENST00000375299 RPAINQ86UA6 219 aa23.15■■□□□ 1.3
UPF3A-202ENST00000375299 TXNRD3Q86VQ6 643 aa23.15■■□□□ 1.3
UPF3A-202ENST00000375299 DDX42Q86XP3 938 aaKnown RBP eCLIP23.15■■□□□ 1.3
UPF3A-202ENST00000375299 ZKSCAN4Q969J2 545 aaPredicted RBP23.15■■□□□ 1.3
UPF3A-202ENST00000375299 EYA3Q99504 573 aa23.15■■□□□ 1.3
UPF3A-202ENST00000375299 ZNF287Q9HBT7 754 aa23.15■■□□□ 1.3
UPF3A-202ENST00000375299 DDX20Q9UHI6 824 aaKnown RBP23.15■■□□□ 1.3
UPF3A-202ENST00000375299 hCG_1984214I3L0E3 225 aa23.15■■□□□ 1.3
UPF3A-202ENST00000375299 IFI16Q16666 785 aaKnown RBP23.15■■□□□ 1.3
UPF3A-202ENST00000375299 ZNF713Q8N859 430 aaPredicted RBP23.15■■□□□ 1.3
UPF3A-202ENST00000375299 FGFBP2Q9BYJ0 223 aa23.15■■□□□ 1.3
UPF3A-202ENST00000375299 KANSL2Q9H9L4 492 aa23.15■■□□□ 1.3
UPF3A-202ENST00000375299 SAP30BPQ9UHR5 308 aaKnown RBP23.15■■□□□ 1.3
UPF3A-202ENST00000375299 MYH7BA7E2Y1 1941 aa23.14■■□□□ 1.3
UPF3A-202ENST00000375299 BAG3O95817 575 aa23.14■■□□□ 1.3
UPF3A-202ENST00000375299 MTMR3Q13615 1198 aa23.14■■□□□ 1.3
UPF3A-202ENST00000375299 SETDB2Q96T68 719 aa23.14■■□□□ 1.3
UPF3A-202ENST00000375299 SRP68Q9UHB9 627 aaKnown RBP23.14■■□□□ 1.3
UPF3A-202ENST00000375299 DDX60LQ5H9U9 1706 aaKnown RBP23.14■■□□□ 1.3
UPF3A-202ENST00000375299 PGRMC1O00264 195 aaKnown RBP23.14■■□□□ 1.29
UPF3A-202ENST00000375299 RDXP35241 583 aaKnown RBP23.14■■□□□ 1.29
UPF3A-202ENST00000375299 EPS15P42566 896 aa23.14■■□□□ 1.29
UPF3A-202ENST00000375299 ADCY7P51828 1080 aa23.14■■□□□ 1.29
UPF3A-202ENST00000375299 PPP2R2AP63151 447 aa23.14■■□□□ 1.29
UPF3A-202ENST00000375299 NBPF5PQ86XG9 351 aaPredicted RBP23.14■■□□□ 1.29
UPF3A-202ENST00000375299 MAPKAPK5Q8IW41 473 aa23.14■■□□□ 1.29
UPF3A-202ENST00000375299 NELFCDQ8IXH7 590 aa23.14■■□□□ 1.29
UPF3A-202ENST00000375299 LRRC57Q8N9N7 239 aa23.14■■□□□ 1.29
UPF3A-202ENST00000375299 NEDD1Q8NHV4 660 aa23.14■■□□□ 1.29
UPF3A-202ENST00000375299 FBXL5Q9UKA1 691 aa23.14■■□□□ 1.29
UPF3A-202ENST00000375299 GOLGA6L7A0A1B0GV03 622 aa23.13■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms