RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 PCDHA13Q9Y5I0 950 aa12.39□□□□□ -0.43
PTPRF-203ENST00000372407 GPC4O75487 556 aa12.39□□□□□ -0.43
PTPRF-203ENST00000372407 MMP10P09238 476 aa12.39□□□□□ -0.43
PTPRF-203ENST00000372407 MXI1P50539 228 aa12.39□□□□□ -0.43
PTPRF-203ENST00000372407 TTLL11Q8NHH1 800 aa12.39□□□□□ -0.43
PTPRF-203ENST00000372407 ABCB6Q9NP58 842 aa12.39□□□□□ -0.43
PTPRF-203ENST00000372407 LUC7L3O95232 432 aaKnown RBP12.38□□□□□ -0.43
PTPRF-203ENST00000372407 GARSP41250 739 aaKnown RBP12.38□□□□□ -0.43
PTPRF-203ENST00000372407 SESN3P58005 492 aa12.38□□□□□ -0.43
PTPRF-203ENST00000372407 TOB2Q14106 344 aaPredicted RBP12.38□□□□□ -0.43
PTPRF-203ENST00000372407 ARID5BQ14865 1188 aa12.38□□□□□ -0.43
PTPRF-203ENST00000372407 RBBP5Q15291 538 aaKnown RBP12.38□□□□□ -0.43
PTPRF-203ENST00000372407 CCDC93Q567U6 631 aa12.38□□□□□ -0.43
PTPRF-203ENST00000372407 TTBK2Q6IQ55 1244 aa12.38□□□□□ -0.43
PTPRF-203ENST00000372407 KCTD1Q719H9 257 aa12.38□□□□□ -0.43
PTPRF-203ENST00000372407 KSR1Q8IVT5 923 aa12.38□□□□□ -0.43
PTPRF-203ENST00000372407 MB21D1Q8N884 522 aa12.38□□□□□ -0.43
PTPRF-203ENST00000372407 PGBD1Q96JS3 809 aa12.38□□□□□ -0.43
PTPRF-203ENST00000372407 CSRNP1Q96S65 589 aa12.38□□□□□ -0.43
PTPRF-203ENST00000372407 PIH1D3Q9NQM4 214 aaKnown RBP12.38□□□□□ -0.43
PTPRF-203ENST00000372407 SGK1O00141 431 aa12.38□□□□□ -0.43
PTPRF-203ENST00000372407 PLA2G4BP0C869 781 aa12.38□□□□□ -0.43
PTPRF-203ENST00000372407 BMP3P12645 472 aa12.38□□□□□ -0.43
PTPRF-203ENST00000372407 SLC16A2P36021 539 aa12.38□□□□□ -0.43
PTPRF-203ENST00000372407 EIF3BP55884 814 aaKnown RBP12.38□□□□□ -0.43
PTPRF-203ENST00000372407 CC2D2BQ6DHV5 1058 aa12.38□□□□□ -0.43
PTPRF-203ENST00000372407 TRIM42Q8IWZ5 723 aa12.38□□□□□ -0.43
PTPRF-203ENST00000372407 FMO2Q99518 471 aa12.38□□□□□ -0.43
PTPRF-203ENST00000372407 JPH2Q9BR39 696 aaPredicted RBP12.38□□□□□ -0.43
PTPRF-203ENST00000372407 PARVGQ9HBI0 331 aa12.38□□□□□ -0.43
PTPRF-203ENST00000372407 CCDC188H7C350 402 aa12.38□□□□□ -0.43
PTPRF-203ENST00000372407 OPHN1O60890 802 aa12.38□□□□□ -0.43
PTPRF-203ENST00000372407 GSTA1P08263 222 aa12.38□□□□□ -0.43
PTPRF-203ENST00000372407 GSTA2P09210 222 aa12.38□□□□□ -0.43
PTPRF-203ENST00000372407 USP17L8P0C7I0 530 aa12.38□□□□□ -0.43
PTPRF-203ENST00000372407 RASIP1Q5U651 963 aa12.38□□□□□ -0.43
PTPRF-203ENST00000372407 RESP18Q5W5W9 173 aa12.38□□□□□ -0.43
PTPRF-203ENST00000372407 DPY19L2Q6NUT2 758 aa12.38□□□□□ -0.43
PTPRF-203ENST00000372407 PPP4R3CPQ6ZMV5 832 aa12.38□□□□□ -0.43
PTPRF-203ENST00000372407 SCYL3Q8IZE3 742 aa12.38□□□□□ -0.43
PTPRF-203ENST00000372407 NME8Q8N427 588 aa12.38□□□□□ -0.43
PTPRF-203ENST00000372407 SLC5A4Q9NY91 659 aa12.38□□□□□ -0.43
PTPRF-203ENST00000372407 ANAPC5Q9UJX4 755 aa12.38□□□□□ -0.43
PTPRF-203ENST00000372407 NCAPD2Q15021 1401 aa12.38□□□□□ -0.43
PTPRF-203ENST00000372407 CYP2D7A0A087X1C5 515 aa12.38□□□□□ -0.43
PTPRF-203ENST00000372407 A6NJR5 290 aa12.38□□□□□ -0.43
PTPRF-203ENST00000372407 ZBTB7AO95365 584 aa12.38□□□□□ -0.43
PTPRF-203ENST00000372407 NR1D1P20393 614 aa12.38□□□□□ -0.43
PTPRF-203ENST00000372407 ASPHQ12797 758 aa12.38□□□□□ -0.43
PTPRF-203ENST00000372407 FAM160B1Q5W0V3 765 aa12.38□□□□□ -0.43
PTPRF-203ENST00000372407 ZNF579Q8NAF0 562 aaKnown RBP12.38□□□□□ -0.43
PTPRF-203ENST00000372407 SCYL1Q96KG9 808 aa12.38□□□□□ -0.43
PTPRF-203ENST00000372407 MED10Q9BTT4 135 aa12.38□□□□□ -0.43
PTPRF-203ENST00000372407 SPC25Q9HBM1 224 aa12.38□□□□□ -0.43
PTPRF-203ENST00000372407 ADRA2BP18089 450 aa12.37□□□□□ -0.43
PTPRF-203ENST00000372407 IQGAP1P46940 1657 aa12.37□□□□□ -0.43
PTPRF-203ENST00000372407 LLGL1Q15334 1064 aa12.37□□□□□ -0.43
PTPRF-203ENST00000372407 CCDC68Q9H2F9 335 aa12.37□□□□□ -0.43
PTPRF-203ENST00000372407 DHX36Q9H2U1 1008 aaKnown RBP12.37□□□□□ -0.43
PTPRF-203ENST00000372407 KMT5AQ9NQR1 393 aa12.37□□□□□ -0.43
PTPRF-203ENST00000372407 CD2APQ9Y5K6 639 aa12.37□□□□□ -0.43
PTPRF-203ENST00000372407 RASGRF2O14827 1237 aa12.37□□□□□ -0.43
PTPRF-203ENST00000372407 PDLIM2Q96JY6 352 aa12.37□□□□□ -0.43
PTPRF-203ENST00000372407 GJB4Q9NTQ9 266 aa12.37□□□□□ -0.43
PTPRF-203ENST00000372407 SRP68Q9UHB9 627 aaKnown RBP12.37□□□□□ -0.43
PTPRF-203ENST00000372407 LRRC7Q96NW7 1537 aa12.37□□□□□ -0.43
PTPRF-203ENST00000372407 MEIS1O00470 390 aa12.37□□□□□ -0.43
PTPRF-203ENST00000372407 UBXN2AP68543 259 aa12.37□□□□□ -0.43
PTPRF-203ENST00000372407 MARCH10Q8NA82 808 aaPredicted RBP12.37□□□□□ -0.43
PTPRF-203ENST00000372407 MYCBPQ99417 103 aaPredicted RBP12.37□□□□□ -0.43
PTPRF-203ENST00000372407 NOVA2Q9UNW9 492 aaKnown RBP12.37□□□□□ -0.43
PTPRF-203ENST00000372407 SNX1Q13596 522 aa12.36□□□□□ -0.43
PTPRF-203ENST00000372407 TFDP1Q14186 410 aa12.36□□□□□ -0.43
PTPRF-203ENST00000372407 CDHR1Q96JP9 859 aa12.36□□□□□ -0.43
PTPRF-203ENST00000372407 CEP170P1Q96L14 293 aa12.36□□□□□ -0.43
PTPRF-203ENST00000372407 GDAQ9Y2T3 454 aa12.36□□□□□ -0.43
PTPRF-203ENST00000372407 FAM149B1Q96BN6 582 aa12.36□□□□□ -0.43
PTPRF-203ENST00000372407 OSBPL5Q9H0X9 879 aaPredicted RBP12.36□□□□□ -0.43
PTPRF-203ENST00000372407 UBE2TQ9NPD8 197 aaPredicted RBP12.36□□□□□ -0.43
PTPRF-203ENST00000372407 HMGB1P1B2RPK0 211 aaPredicted RBP12.36□□□□□ -0.43
PTPRF-203ENST00000372407 PFDN6O15212 129 aa12.36□□□□□ -0.43
PTPRF-203ENST00000372407 XPOTO43592 962 aaKnown RBP12.36□□□□□ -0.43
PTPRF-203ENST00000372407 CDC37Q16543 378 aaPredicted RBP12.36□□□□□ -0.43
PTPRF-203ENST00000372407 TMTC3Q6ZXV5 915 aa12.36□□□□□ -0.43
PTPRF-203ENST00000372407 FMR1NBQ8N0W7 255 aaPredicted RBP12.36□□□□□ -0.43
PTPRF-203ENST00000372407 RNF169Q8NCN4 708 aa12.36□□□□□ -0.43
PTPRF-203ENST00000372407 CCHCR1Q8TD31 782 aa12.36□□□□□ -0.43
PTPRF-203ENST00000372407 DYNLL2Q96FJ2 89 aa12.36□□□□□ -0.43
PTPRF-203ENST00000372407 BRIP1Q9BX63 1249 aa12.36□□□□□ -0.43
PTPRF-203ENST00000372407 PCIF1Q9H4Z3 704 aa12.36□□□□□ -0.43
PTPRF-203ENST00000372407 SEPT9Q9UHD8 586 aaPredicted RBP12.36□□□□□ -0.43
PTPRF-203ENST00000372407 LRRD1A4D1F6 860 aa12.36□□□□□ -0.43
PTPRF-203ENST00000372407 INO80B-WBP1J3KQ70 363 aa12.36□□□□□ -0.43
PTPRF-203ENST00000372407 IGKV5-2P06315 115 aa12.36□□□□□ -0.43
PTPRF-203ENST00000372407 CNGA1P29973 690 aa12.36□□□□□ -0.43
PTPRF-203ENST00000372407 MSH2P43246 934 aa12.36□□□□□ -0.43
PTPRF-203ENST00000372407 SLCO1A2P46721 670 aa12.36□□□□□ -0.43
PTPRF-203ENST00000372407 CUL1Q13616 776 aa12.36□□□□□ -0.43
PTPRF-203ENST00000372407 CLEC17AQ6ZS10 378 aa12.36□□□□□ -0.43
PTPRF-203ENST00000372407 RFX6Q8HWS3 928 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms