RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 GALNT17Q6IS24 598 aa18.01■□□□□ 0.47
CLN3-201ENST00000333496 SEPT1Q8WYJ6 367 aa18.01■□□□□ 0.47
CLN3-201ENST00000333496 LENG9Q96B70 501 aa18.01■□□□□ 0.47
CLN3-201ENST00000333496 VWCEQ96DN2 955 aa18.01■□□□□ 0.47
CLN3-201ENST00000333496 JPH1Q9HDC5 661 aaPredicted RBP18.01■□□□□ 0.47
CLN3-201ENST00000333496 SLC9A2Q9UBY0 812 aa18.01■□□□□ 0.47
CLN3-201ENST00000333496 DHX15O43143 795 aaKnown RBP18■□□□□ 0.47
CLN3-201ENST00000333496 HOXC8P31273 242 aa18■□□□□ 0.47
CLN3-201ENST00000333496 TBCKQ8TEA7 893 aa18■□□□□ 0.47
CLN3-201ENST00000333496 DHX38Q92620 1227 aaKnown RBP18■□□□□ 0.47
CLN3-201ENST00000333496 SCLYQ96I15 445 aa18■□□□□ 0.47
CLN3-201ENST00000333496 LRCH3Q96II8 777 aa18■□□□□ 0.47
CLN3-201ENST00000333496 UIMC1Q96RL1 719 aa18■□□□□ 0.47
CLN3-201ENST00000333496 BUD13Q9BRD0 619 aaKnown RBP eCLIP18■□□□□ 0.473e-6■□□□□ 10.1
CLN3-201ENST00000333496 SMIM10L2AP0DMW4 78 aa17.99■□□□□ 0.47
CLN3-201ENST00000333496 SMIM10L2BP0DMW5 78 aa17.99■□□□□ 0.47
CLN3-201ENST00000333496 ACRP10323 421 aa17.99■□□□□ 0.47
CLN3-201ENST00000333496 USP11P51784 963 aa17.99■□□□□ 0.47
CLN3-201ENST00000333496 PPIGQ13427 754 aaKnown RBP eCLIP17.99■□□□□ 0.476e-7■■□□□ 11.8
CLN3-201ENST00000333496 PCYT2Q99447 389 aa17.99■□□□□ 0.47
CLN3-201ENST00000333496 SDF4Q9BRK5 362 aa17.99■□□□□ 0.47
CLN3-201ENST00000333496 RNPEPQ9H4A4 650 aa17.99■□□□□ 0.47
CLN3-201ENST00000333496 NOD1Q9Y239 953 aa17.99■□□□□ 0.47
CLN3-201ENST00000333496 PITPNM1O00562 1244 aa17.98■□□□□ 0.47
CLN3-201ENST00000333496 PRR16Q569H4 304 aa17.98■□□□□ 0.47
CLN3-201ENST00000333496 TMEM240Q5SV17 173 aa17.98■□□□□ 0.47
CLN3-201ENST00000333496 OXER1Q8TDS5 423 aa17.98■□□□□ 0.47
CLN3-201ENST00000333496 WNT8BQ93098 351 aa17.98■□□□□ 0.47
CLN3-201ENST00000333496 IL23AQ9NPF7 189 aa17.98■□□□□ 0.47
CLN3-201ENST00000333496 IPO5O00410 1097 aaKnown RBP17.98■□□□□ 0.47
CLN3-201ENST00000333496 LGR5O75473 907 aa17.98■□□□□ 0.47
CLN3-201ENST00000333496 ATG7O95352 703 aa17.98■□□□□ 0.47
CLN3-201ENST00000333496 CCNE2O96020 404 aa17.98■□□□□ 0.47
CLN3-201ENST00000333496 XBP1P17861 261 aa17.98■□□□□ 0.47
CLN3-201ENST00000333496 ACTR2P61160 394 aa17.98■□□□□ 0.47
CLN3-201ENST00000333496 SETQ01105 290 aaPredicted RBP17.98■□□□□ 0.47
CLN3-201ENST00000333496 CCDC83Q8IWF9 413 aa17.98■□□□□ 0.47
CLN3-201ENST00000333496 WASF1Q92558 559 aa17.98■□□□□ 0.47
CLN3-201ENST00000333496 ZNF215Q9UL58 517 aaPredicted RBP17.98■□□□□ 0.47
CLN3-201ENST00000333496 GBF1Q92538 1859 aa17.97■□□□□ 0.47
CLN3-201ENST00000333496 EMSYQ7Z589 1322 aa17.97■□□□□ 0.47
CLN3-201ENST00000333496 DDX39AO00148 427 aaKnown RBP17.97■□□□□ 0.47
CLN3-201ENST00000333496 IQCF3P0C7M6 154 aa17.97■□□□□ 0.47
CLN3-201ENST00000333496 ADAM17P78536 824 aa17.97■□□□□ 0.47
CLN3-201ENST00000333496 RABEP1Q15276 862 aa17.97■□□□□ 0.47
CLN3-201ENST00000333496 TRIM71Q2Q1W2 868 aaKnown RBP17.97■□□□□ 0.47
CLN3-201ENST00000333496 ZNF365Q70YC5 407 aa17.97■□□□□ 0.47
CLN3-201ENST00000333496 TBC1D32Q96NH3 1257 aa17.97■□□□□ 0.47
CLN3-201ENST00000333496 ZNF577Q9BSK1 485 aa17.97■□□□□ 0.47
CLN3-201ENST00000333496 SETD4Q9NVD3 440 aa17.97■□□□□ 0.47
CLN3-201ENST00000333496 C17orf102A2RUQ5 167 aa17.96■□□□□ 0.47
CLN3-201ENST00000333496 RBAK-RBAKDNI3L0D1 243 aa17.96■□□□□ 0.47
CLN3-201ENST00000333496 TREHO43280 583 aa17.96■□□□□ 0.47
CLN3-201ENST00000333496 RBL2Q08999 1139 aa17.96■□□□□ 0.47
CLN3-201ENST00000333496 PTK7Q13308 1070 aa17.96■□□□□ 0.47
CLN3-201ENST00000333496 BFSP2Q13515 415 aa17.96■□□□□ 0.47
CLN3-201ENST00000333496 NONOQ15233 471 aaKnown RBP eCLIP17.96■□□□□ 0.47
CLN3-201ENST00000333496 INF2Q27J81 1249 aa17.96■□□□□ 0.47
CLN3-201ENST00000333496 EARS2Q5JPH6 523 aaKnown RBP17.96■□□□□ 0.47
CLN3-201ENST00000333496 CAGE1Q8TC20 777 aa17.96■□□□□ 0.47
CLN3-201ENST00000333496 ZSCAN31Q96LW9 406 aaPredicted RBP17.96■□□□□ 0.47
CLN3-201ENST00000333496 BACH2Q9BYV9 841 aa17.96■□□□□ 0.47
CLN3-201ENST00000333496 SMARCAD1Q9H4L7 1026 aa17.96■□□□□ 0.47
CLN3-201ENST00000333496 UPF2Q9HAU5 1272 aaKnown RBP17.96■□□□□ 0.47
CLN3-201ENST00000333496 ERAP1Q9NZ08 941 aa17.96■□□□□ 0.47
CLN3-201ENST00000333496 CDH23Q9H251 3354 aa17.95■□□□□ 0.46
CLN3-201ENST00000333496 SIP14410 1827 aa17.95■□□□□ 0.46
CLN3-201ENST00000333496 CYP3A7-CYP3A51PA0A087WV96 503 aa17.95■□□□□ 0.46
CLN3-201ENST00000333496 IGKV6D-21A0A0A0MT36 114 aa17.95■□□□□ 0.46
CLN3-201ENST00000333496 MSH4O15457 936 aa17.95■□□□□ 0.46
CLN3-201ENST00000333496 TDP2O95551 362 aa17.95■□□□□ 0.46
CLN3-201ENST00000333496 CYP3A7P24462 503 aa17.95■□□□□ 0.46
CLN3-201ENST00000333496 MARK3P27448 753 aa17.95■□□□□ 0.46
CLN3-201ENST00000333496 GPNMBQ14956 572 aa17.95■□□□□ 0.46
CLN3-201ENST00000333496 ABHD15Q6UXT9 468 aa17.95■□□□□ 0.46
CLN3-201ENST00000333496 KRT25Q7Z3Z0 450 aa17.95■□□□□ 0.46
CLN3-201ENST00000333496 SERINC5Q86VE9 423 aa17.95■□□□□ 0.46
CLN3-201ENST00000333496 GLG1Q92896 1179 aa17.95■□□□□ 0.46
CLN3-201ENST00000333496 ATP6V0A1Q93050 837 aa17.95■□□□□ 0.46
CLN3-201ENST00000333496 RNPC3Q96LT9 517 aaKnown RBP17.95■□□□□ 0.46
CLN3-201ENST00000333496 TBC1D22BQ9NU19 505 aa17.95■□□□□ 0.46
CLN3-201ENST00000333496 EVPLQ92817 2033 aa17.95■□□□□ 0.46
CLN3-201ENST00000333496 LOXHD1Q8IVV2 1947 aa17.94■□□□□ 0.46
CLN3-201ENST00000333496 CD2BP2O95400 341 aaKnown RBP17.94■□□□□ 0.46
CLN3-201ENST00000333496 CKBP12277 381 aa17.94■□□□□ 0.46
CLN3-201ENST00000333496 NR5A1Q13285 461 aa17.94■□□□□ 0.46
CLN3-201ENST00000333496 Q4G0T1 1027 aa17.94■□□□□ 0.46
CLN3-201ENST00000333496 RASIP1Q5U651 963 aa17.94■□□□□ 0.46
CLN3-201ENST00000333496 PSRC1Q6PGN9 363 aaPredicted RBP17.94■□□□□ 0.46
CLN3-201ENST00000333496 TRAF7Q6Q0C0 670 aa17.94■□□□□ 0.46
CLN3-201ENST00000333496 RETREG2Q8NC44 543 aa17.94■□□□□ 0.46
CLN3-201ENST00000333496 AFAP1L1Q8TED9 768 aa17.94■□□□□ 0.46
CLN3-201ENST00000333496 LMBR1Q8WVP7 490 aa17.94■□□□□ 0.46
CLN3-201ENST00000333496 TNFRSF25Q93038 417 aa17.94■□□□□ 0.46
CLN3-201ENST00000333496 GJA10Q969M2 543 aa17.94■□□□□ 0.46
CLN3-201ENST00000333496 MBOAT7Q96N66 472 aa17.94■□□□□ 0.46
CLN3-201ENST00000333496 SH2B1Q9NRF2 756 aaPredicted RBP17.94■□□□□ 0.46
CLN3-201ENST00000333496 PTPRSQ13332 1948 aa17.94■□□□□ 0.46
CLN3-201ENST00000333496 FOSBP53539 338 aa17.94■□□□□ 0.46
CLN3-201ENST00000333496 DEFB128Q7Z7B8 93 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms