RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 CFAP73A6NFT4 308 aa13.88□□□□□ -0.19
COL3A1-201ENST00000304636 PPFIA2O75334 1257 aa13.88□□□□□ -0.19
COL3A1-201ENST00000304636 TTLL1O95922 423 aa13.88□□□□□ -0.19
COL3A1-201ENST00000304636 LTKP29376 864 aa13.88□□□□□ -0.19
COL3A1-201ENST00000304636 DDIT3P35638 169 aa13.88□□□□□ -0.19
COL3A1-201ENST00000304636 CYB5R4Q7L1T6 521 aa13.88□□□□□ -0.19
COL3A1-201ENST00000304636 CCDC17Q96LX7 622 aa13.88□□□□□ -0.19
COL3A1-201ENST00000304636 LRGUKQ96M69 825 aa13.88□□□□□ -0.19
COL3A1-201ENST00000304636 KLC4Q9NSK0 619 aa13.88□□□□□ -0.19
COL3A1-201ENST00000304636 PCDHB4Q9Y5E5 795 aa13.88□□□□□ -0.19
COL3A1-201ENST00000304636 ACSL3O95573 720 aa13.88□□□□□ -0.19
COL3A1-201ENST00000304636 GFPT1Q06210 699 aaPredicted RBP13.88□□□□□ -0.19
COL3A1-201ENST00000304636 MMEL1Q495T6 779 aa13.88□□□□□ -0.19
COL3A1-201ENST00000304636 ZBTB8OSQ8IWT0 167 aa13.88□□□□□ -0.19
COL3A1-201ENST00000304636 PROCA1Q8NCQ7 364 aaPredicted RBP13.88□□□□□ -0.19
COL3A1-201ENST00000304636 DPF2Q92785 391 aa13.88□□□□□ -0.19
COL3A1-201ENST00000304636 C8orf37Q96NL8 207 aa13.88□□□□□ -0.19
COL3A1-201ENST00000304636 NACC1Q96RE7 527 aa13.88□□□□□ -0.19
COL3A1-201ENST00000304636 CSRNP1Q96S65 589 aa13.88□□□□□ -0.19
COL3A1-201ENST00000304636 CENPKQ9BS16 269 aa13.88□□□□□ -0.19
COL3A1-201ENST00000304636 NCOA3Q9Y6Q9 1424 aa13.88□□□□□ -0.19
COL3A1-201ENST00000304636 SPARCL1Q14515 664 aa13.87□□□□□ -0.19
COL3A1-201ENST00000304636 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.87□□□□□ -0.19
COL3A1-201ENST00000304636 NEDD4P46934 1319 aa13.87□□□□□ -0.19
COL3A1-201ENST00000304636 PPP2R5CQ13362 524 aa13.87□□□□□ -0.19
COL3A1-201ENST00000304636 ARHGEF16Q5VV41 709 aa13.87□□□□□ -0.19
COL3A1-201ENST00000304636 WDR11Q9BZH6 1224 aa13.87□□□□□ -0.19
COL3A1-201ENST00000304636 SNX24Q9Y343 169 aa13.87□□□□□ -0.19
COL3A1-201ENST00000304636 PVALEFA0A1B0GWK0 134 aa13.87□□□□□ -0.19
COL3A1-201ENST00000304636 IPO5O00410 1097 aaKnown RBP13.87□□□□□ -0.19
COL3A1-201ENST00000304636 KRT1P04264 644 aa13.87□□□□□ -0.19
COL3A1-201ENST00000304636 MCAMP43121 646 aa13.87□□□□□ -0.19
COL3A1-201ENST00000304636 ST13P4Q8IZP2 240 aaPredicted RBP13.87□□□□□ -0.19
COL3A1-201ENST00000304636 TMEM60Q9H2L4 133 aa13.87□□□□□ -0.19
COL3A1-201ENST00000304636 HAUS2Q9NVX0 235 aa13.87□□□□□ -0.19
COL3A1-201ENST00000304636 CAPN11Q9UMQ6 739 aa13.87□□□□□ -0.19
COL3A1-201ENST00000304636 USP42Q9H9J4 1324 aaKnown RBP13.87□□□□□ -0.19
COL3A1-201ENST00000304636 IL6STP40189 918 aaPredicted RBP13.87□□□□□ -0.19
COL3A1-201ENST00000304636 PMS2P54278 862 aa13.87□□□□□ -0.19
COL3A1-201ENST00000304636 YARSP54577 528 aaKnown RBP13.87□□□□□ -0.19
COL3A1-201ENST00000304636 NR1H3Q13133 447 aa13.87□□□□□ -0.19
COL3A1-201ENST00000304636 LY9Q9HBG7 655 aa13.87□□□□□ -0.19
COL3A1-201ENST00000304636 EFCAB6Q5THR3 1501 aa13.87□□□□□ -0.19
COL3A1-201ENST00000304636 A0A1B0GTH6 734 aa13.86□□□□□ -0.19
COL3A1-201ENST00000304636 MEFVO15553 781 aaPredicted RBP13.86□□□□□ -0.19
COL3A1-201ENST00000304636 MTF1Q14872 753 aa13.86□□□□□ -0.19
COL3A1-201ENST00000304636 DGKHQ86XP1 1220 aa13.86□□□□□ -0.19
COL3A1-201ENST00000304636 CHMP6Q96FZ7 201 aa13.86□□□□□ -0.19
COL3A1-201ENST00000304636 BRIP1Q9BX63 1249 aa13.86□□□□□ -0.19
COL3A1-201ENST00000304636 TTLL3Q9Y4R7 772 aa13.86□□□□□ -0.19
COL3A1-201ENST00000304636 AFG3L2Q9Y4W6 797 aa13.86□□□□□ -0.19
COL3A1-201ENST00000304636 KRT3P12035 628 aa13.86□□□□□ -0.19
COL3A1-201ENST00000304636 ESRRGP62508 458 aa13.86□□□□□ -0.19
COL3A1-201ENST00000304636 TRIP13Q15645 432 aaPredicted RBP13.86□□□□□ -0.19
COL3A1-201ENST00000304636 PFKFB3Q16875 520 aaPredicted RBP13.86□□□□□ -0.19
COL3A1-201ENST00000304636 CENPUQ71F23 418 aa13.86□□□□□ -0.19
COL3A1-201ENST00000304636 METTL16Q86W50 562 aaKnown RBP13.86□□□□□ -0.19
COL3A1-201ENST00000304636 MXD3Q9BW11 206 aa13.86□□□□□ -0.19
COL3A1-201ENST00000304636 PARVGQ9HBI0 331 aa13.86□□□□□ -0.19
COL3A1-201ENST00000304636 UBN2Q6ZU65 1347 aa13.86□□□□□ -0.19
COL3A1-201ENST00000304636 DCAF8L1A6NGE4 600 aa13.86□□□□□ -0.19
COL3A1-201ENST00000304636 KIF28PB7ZC32 967 aa13.86□□□□□ -0.19
COL3A1-201ENST00000304636 HNRNPDLO14979 420 aaKnown RBP13.86□□□□□ -0.19
COL3A1-201ENST00000304636 IGKV5-2P06315 115 aa13.86□□□□□ -0.19
COL3A1-201ENST00000304636 TMEM191BP0C7N4 346 aa13.86□□□□□ -0.19
COL3A1-201ENST00000304636 PLS3P13797 630 aa13.86□□□□□ -0.19
COL3A1-201ENST00000304636 ACTN3Q08043 901 aaPredicted RBP13.86□□□□□ -0.19
COL3A1-201ENST00000304636 RASGRF1Q13972 1273 aa13.86□□□□□ -0.19
COL3A1-201ENST00000304636 NYAP1Q6ZVC0 841 aa13.86□□□□□ -0.19
COL3A1-201ENST00000304636 RASGRP2Q7LDG7 609 aa13.86□□□□□ -0.19
COL3A1-201ENST00000304636 SPATA4Q8NEY3 305 aa13.86□□□□□ -0.19
COL3A1-201ENST00000304636 PNMA2Q9UL42 364 aa13.86□□□□□ -0.19
COL3A1-201ENST00000304636 NCAPD2Q15021 1401 aa13.86□□□□□ -0.19
COL3A1-201ENST00000304636 MCF2LO15068 1137 aa13.86□□□□□ -0.19
COL3A1-201ENST00000304636 EPHA10Q5JZY3 1008 aa13.86□□□□□ -0.19
COL3A1-201ENST00000304636 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.86□□□□□ -0.19
COL3A1-201ENST00000304636 TET3O43151 1660 aa13.86□□□□□ -0.19
COL3A1-201ENST00000304636 TTC4O95801 387 aa13.86□□□□□ -0.19
COL3A1-201ENST00000304636 HDLBPQ00341 1268 aaKnown RBP13.86□□□□□ -0.19
COL3A1-201ENST00000304636 ATG16L1Q676U5 607 aa13.86□□□□□ -0.19
COL3A1-201ENST00000304636 NLRP10Q86W26 655 aa13.86□□□□□ -0.19
COL3A1-201ENST00000304636 OXER1Q8TDS5 423 aa13.86□□□□□ -0.19
COL3A1-201ENST00000304636 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.86□□□□□ -0.198e-7■■■■■ 32.1
COL3A1-201ENST00000304636 HEG1Q9ULI3 1381 aa13.85□□□□□ -0.19
COL3A1-201ENST00000304636 IQANK1A0A1B0GTG1 560 aa13.85□□□□□ -0.19
COL3A1-201ENST00000304636 GPC4O75487 556 aa13.85□□□□□ -0.19
COL3A1-201ENST00000304636 CPP00450 1065 aa13.85□□□□□ -0.19
COL3A1-201ENST00000304636 TMOD1P28289 359 aa13.85□□□□□ -0.19
COL3A1-201ENST00000304636 CDC27P30260 824 aa13.85□□□□□ -0.19
COL3A1-201ENST00000304636 CAV1Q03135 178 aa13.85□□□□□ -0.19
COL3A1-201ENST00000304636 DIXDC1Q155Q3 683 aa13.85□□□□□ -0.19
COL3A1-201ENST00000304636 SYT2Q8N9I0 419 aaPredicted RBP13.85□□□□□ -0.19
COL3A1-201ENST00000304636 ZNF577Q9BSK1 485 aa13.85□□□□□ -0.19
COL3A1-201ENST00000304636 STOML1Q9UBI4 398 aa13.85□□□□□ -0.19
COL3A1-201ENST00000304636 LIMA1Q9UHB6 759 aaKnown RBP13.85□□□□□ -0.19
COL3A1-201ENST00000304636 PRR36Q9H6K5 1346 aa13.85□□□□□ -0.19
COL3A1-201ENST00000304636 ESYT3A0FGR9 886 aa13.85□□□□□ -0.19
COL3A1-201ENST00000304636 MXI1P50539 228 aa13.85□□□□□ -0.19
COL3A1-201ENST00000304636 MUM1L1Q5H9M0 696 aa13.85□□□□□ -0.19
COL3A1-201ENST00000304636 COA7Q96BR5 231 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms