RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 CDHR1Q96JP9 859 aa14.66□□□□□ -0.06
CD44-203ENST00000278386 NECAB3Q96P71 396 aaPredicted RBP14.66□□□□□ -0.06
CD44-203ENST00000278386 SENP7Q9BQF6 1050 aa14.66□□□□□ -0.06
CD44-203ENST00000278386 COG5Q9UP83 839 aa14.66□□□□□ -0.06
CD44-203ENST00000278386 TELO2Q9Y4R8 837 aa14.66□□□□□ -0.06
CD44-203ENST00000278386 NCOR1O75376 2440 aa14.66□□□□□ -0.06
CD44-203ENST00000278386 ATG2AQ2TAZ0 1938 aa14.65□□□□□ -0.06
CD44-203ENST00000278386 LPXNO60711 386 aa14.65□□□□□ -0.06
CD44-203ENST00000278386 TCF7P36402 384 aaPredicted RBP14.65□□□□□ -0.06
CD44-203ENST00000278386 ERVK-21P61565 698 aa14.65□□□□□ -0.06
CD44-203ENST00000278386 SYNE3Q6ZMZ3 975 aa14.65□□□□□ -0.06
CD44-203ENST00000278386 TMTC3Q6ZXV5 915 aa14.65□□□□□ -0.06
CD44-203ENST00000278386 FBXO22Q8NEZ5 403 aa14.65□□□□□ -0.06
CD44-203ENST00000278386 HLA-CQ95604 372 aa14.65□□□□□ -0.06
CD44-203ENST00000278386 EHMT1Q9H9B1 1298 aa14.65□□□□□ -0.06
CD44-203ENST00000278386 INSL6Q9Y581 213 aa14.65□□□□□ -0.06
CD44-203ENST00000278386 BRWD1Q9NSI6 2320 aa14.64□□□□□ -0.07
CD44-203ENST00000278386 UPP2O95045 317 aa14.64□□□□□ -0.07
CD44-203ENST00000278386 MARK3P27448 753 aa14.64□□□□□ -0.07
CD44-203ENST00000278386 MTMR1Q13613 665 aa14.64□□□□□ -0.07
CD44-203ENST00000278386 RNF20Q5VTR2 975 aa14.64□□□□□ -0.07
CD44-203ENST00000278386 YME1L1Q96TA2 773 aa14.64□□□□□ -0.07
CD44-203ENST00000278386 C17orf80Q9BSJ5 609 aa14.64□□□□□ -0.07
CD44-203ENST00000278386 SUGCTQ9HAC7 445 aa14.64□□□□□ -0.07
CD44-203ENST00000278386 COL4A6Q14031 1691 aa14.64□□□□□ -0.07
CD44-203ENST00000278386 CNTNAP5Q8WYK1 1306 aa14.64□□□□□ -0.07
CD44-203ENST00000278386 NRCAMQ92823 1304 aa14.64□□□□□ -0.07
CD44-203ENST00000278386 BMP1P13497 986 aa14.63□□□□□ -0.07
CD44-203ENST00000278386 KCNA2P16389 499 aa14.63□□□□□ -0.07
CD44-203ENST00000278386 NAPAP54920 295 aa14.63□□□□□ -0.07
CD44-203ENST00000278386 PPFIA1Q13136 1202 aa14.63□□□□□ -0.07
CD44-203ENST00000278386 NECTIN1Q15223 517 aa14.63□□□□□ -0.07
CD44-203ENST00000278386 SGMS1Q86VZ5 419 aa14.63□□□□□ -0.07
CD44-203ENST00000278386 FANCBQ8NB91 859 aa14.63□□□□□ -0.07
CD44-203ENST00000278386 APBB2Q92870 758 aa14.63□□□□□ -0.07
CD44-203ENST00000278386 GLG1Q92896 1179 aa14.63□□□□□ -0.07
CD44-203ENST00000278386 IFIH1Q9BYX4 1025 aaKnown RBP14.63□□□□□ -0.07
CD44-203ENST00000278386 LMCD1Q9NZU5 365 aa14.63□□□□□ -0.07
CD44-203ENST00000278386 PCDHA6Q9UN73 950 aa14.63□□□□□ -0.07
CD44-203ENST00000278386 PCDHA8Q9Y5H6 950 aa14.63□□□□□ -0.07
CD44-203ENST00000278386 KIAA1671Q9BY89 1806 aa14.63□□□□□ -0.07
CD44-203ENST00000278386 ATP9AO75110 1047 aa14.62□□□□□ -0.07
CD44-203ENST00000278386 GHRP10912 638 aa14.62□□□□□ -0.07
CD44-203ENST00000278386 ITGB5P18084 799 aa14.62□□□□□ -0.07
CD44-203ENST00000278386 MKRN4PQ13434 485 aaPredicted RBP14.62□□□□□ -0.07
CD44-203ENST00000278386 GRIK4Q16099 956 aa14.62□□□□□ -0.07
CD44-203ENST00000278386 BMP2KLQ5H9B9 411 aa14.62□□□□□ -0.07
CD44-203ENST00000278386 APOA5Q6Q788 366 aa14.62□□□□□ -0.07
CD44-203ENST00000278386 RUFY4Q6ZNE9 571 aa14.62□□□□□ -0.07
CD44-203ENST00000278386 SEPT1Q8WYJ6 367 aa14.62□□□□□ -0.07
CD44-203ENST00000278386 TCEANC2Q96MN5 208 aa14.62□□□□□ -0.07
CD44-203ENST00000278386 OSBPL7Q9BZF2 842 aa14.62□□□□□ -0.07
CD44-203ENST00000278386 RBM28Q9NW13 759 aaKnown RBP14.62□□□□□ -0.07
CD44-203ENST00000278386 ERAP1Q9NZ08 941 aa14.62□□□□□ -0.07
CD44-203ENST00000278386 TUBE1Q9UJT0 475 aa14.62□□□□□ -0.07
CD44-203ENST00000278386 UBIAD1Q9Y5Z9 338 aa14.62□□□□□ -0.07
CD44-203ENST00000278386 IGBP1P78318 339 aa14.61□□□□□ -0.07
CD44-203ENST00000278386 ADAM17P78536 824 aa14.61□□□□□ -0.07
CD44-203ENST00000278386 HTRA4P83105 476 aaPredicted RBP14.61□□□□□ -0.07
CD44-203ENST00000278386 RTN1Q16799 776 aa14.61□□□□□ -0.07
CD44-203ENST00000278386 WWC2Q6AWC2 1192 aa14.61□□□□□ -0.07
CD44-203ENST00000278386 TAF2Q6P1X5 1199 aa14.61□□□□□ -0.07
CD44-203ENST00000278386 RSPH3Q86UC2 560 aa14.61□□□□□ -0.07
CD44-203ENST00000278386 SKAP1Q86WV1 359 aa14.61□□□□□ -0.07
CD44-203ENST00000278386 SP7Q8TDD2 431 aaPredicted RBP14.61□□□□□ -0.07
CD44-203ENST00000278386 PGBD1Q96JS3 809 aa14.61□□□□□ -0.07
CD44-203ENST00000278386 SAMD11Q96NU1 681 aa14.61□□□□□ -0.07
CD44-203ENST00000278386 NEK1Q96PY6 1258 aa14.61□□□□□ -0.07
CD44-203ENST00000278386 JPH1Q9HDC5 661 aaPredicted RBP14.61□□□□□ -0.07
CD44-203ENST00000278386 NAP1L2Q9ULW6 460 aaPredicted RBP14.61□□□□□ -0.07
CD44-203ENST00000278386 MYH9P35579 1960 aaKnown RBP14.61□□□□□ -0.07
CD44-203ENST00000278386 LOC101059915A0A1B0GWI6 518 aaPredicted RBP14.6□□□□□ -0.07
CD44-203ENST00000278386 GSTTP1A0A1W2PQM5 241 aa14.6□□□□□ -0.07
CD44-203ENST00000278386 GOLGA8AA7E2F4 631 aa14.6□□□□□ -0.07
CD44-203ENST00000278386 GOLGA8BA8MQT2 603 aa14.6□□□□□ -0.07
CD44-203ENST00000278386 ZBTB43O43298 467 aa14.6□□□□□ -0.07
CD44-203ENST00000278386 COL9A1P20849 921 aa14.6□□□□□ -0.07
CD44-203ENST00000278386 ADCY7P51828 1080 aa14.6□□□□□ -0.07
CD44-203ENST00000278386 EPC2Q52LR7 807 aa14.6□□□□□ -0.07
CD44-203ENST00000278386 FAM26DQ5JW98 314 aa14.6□□□□□ -0.07
CD44-203ENST00000278386 PPP1R18Q6NYC8 613 aa14.6□□□□□ -0.07
CD44-203ENST00000278386 CENPQQ7L2Z9 268 aaPredicted RBP14.6□□□□□ -0.07
CD44-203ENST00000278386 TOP1MTQ969P6 601 aa14.6□□□□□ -0.07
CD44-203ENST00000278386 SDF4Q9BRK5 362 aa14.6□□□□□ -0.07
CD44-203ENST00000278386 SMARCAD1Q9H4L7 1026 aa14.6□□□□□ -0.07
CD44-203ENST00000278386 UBE2ZQ9H832 354 aaPredicted RBP14.6□□□□□ -0.07
CD44-203ENST00000278386 JADE2Q9NQC1 790 aa14.6□□□□□ -0.07
CD44-203ENST00000278386 SLC9A2Q9UBY0 812 aa14.6□□□□□ -0.07
CD44-203ENST00000278386 TRPC6Q9Y210 931 aa14.6□□□□□ -0.07
CD44-203ENST00000278386 WDR81Q562E7 1941 aa14.59□□□□□ -0.07
CD44-203ENST00000278386 PTPROQ16827 1216 aa14.59□□□□□ -0.07
CD44-203ENST00000278386 DNAJB3Q8WWF6 145 aa14.59□□□□□ -0.07
CD44-203ENST00000278386 MXRA8Q9BRK3 442 aa14.59□□□□□ -0.07
CD44-203ENST00000278386 ANO3Q9BYT9 981 aa14.59□□□□□ -0.07
CD44-203ENST00000278386 FAM49AQ9H0Q0 323 aaPredicted RBP14.59□□□□□ -0.07
CD44-203ENST00000278386 AZI2Q9H6S1 392 aa14.59□□□□□ -0.07
CD44-203ENST00000278386 RIC8AQ9NPQ8 531 aa14.59□□□□□ -0.07
CD44-203ENST00000278386 CDY2AQ9Y6F7 541 aa14.59□□□□□ -0.07
CD44-203ENST00000278386 TTC3P53804 2025 aa14.59□□□□□ -0.07
CD44-203ENST00000278386 EVPLQ92817 2033 aa14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms