RNA–Protein interactions for RNA: ENST00000251739.9

VPS50-201, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS50, Length 1,193 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-201ENST00000251739 ZNF618Q5T7W0 954 aa11.94□□□□□ -0.5
VPS50-201ENST00000251739 KRT40Q6A162 431 aa11.94□□□□□ -0.5
VPS50-201ENST00000251739 TMCO2Q7Z6W1 182 aaPredicted RBP11.94□□□□□ -0.5
VPS50-201ENST00000251739 ZNF687Q8N1G0 1237 aa11.94□□□□□ -0.5
VPS50-201ENST00000251739 IGDCC4Q8TDY8 1250 aa11.94□□□□□ -0.5
VPS50-201ENST00000251739 RUFY2Q8WXA3 655 aa11.94□□□□□ -0.5
VPS50-201ENST00000251739 MAP4K1Q92918 833 aa11.94□□□□□ -0.5
VPS50-201ENST00000251739 SPATA33Q96N06 139 aa11.94□□□□□ -0.5
VPS50-201ENST00000251739 MAP3K14Q99558 947 aa11.94□□□□□ -0.5
VPS50-201ENST00000251739 SPZ1Q9BXG8 430 aa11.94□□□□□ -0.5
VPS50-201ENST00000251739 BCAS3Q9H6U6 928 aa11.94□□□□□ -0.5
VPS50-201ENST00000251739 CERS4Q9HA82 394 aa11.94□□□□□ -0.5
VPS50-201ENST00000251739 POTEMA6NI47 508 aa11.93□□□□□ -0.5
VPS50-201ENST00000251739 KIF28PB7ZC32 967 aa11.93□□□□□ -0.5
VPS50-201ENST00000251739 TLL1O43897 1013 aa11.93□□□□□ -0.5
VPS50-201ENST00000251739 EFCAB14O75071 495 aa11.93□□□□□ -0.5
VPS50-201ENST00000251739 WTAPQ15007 396 aa11.93□□□□□ -0.5
VPS50-201ENST00000251739 POTEGQ6S5H5 508 aa11.93□□□□□ -0.5
VPS50-201ENST00000251739 RALYLQ86SE5 291 aaKnown RBP11.93□□□□□ -0.5
VPS50-201ENST00000251739 NCOA7Q8NI08 942 aa11.93□□□□□ -0.5
VPS50-201ENST00000251739 ARNTL2Q8WYA1 636 aa11.93□□□□□ -0.5
VPS50-201ENST00000251739 UHRF1Q96T88 793 aaPredicted RBP11.93□□□□□ -0.5
VPS50-201ENST00000251739 LY9Q9HBG7 655 aa11.93□□□□□ -0.5
VPS50-201ENST00000251739 EMSYQ7Z589 1322 aa11.92□□□□□ -0.5
VPS50-201ENST00000251739 LINC01553A4QN01 128 aa11.92□□□□□ -0.5
VPS50-201ENST00000251739 SPATA31C2B4DYI2 1134 aa11.92□□□□□ -0.5
VPS50-201ENST00000251739 PIK3CDO00329 1044 aa11.92□□□□□ -0.5
VPS50-201ENST00000251739 LGR5O75473 907 aa11.92□□□□□ -0.5
VPS50-201ENST00000251739 STAM2O75886 525 aa11.92□□□□□ -0.5
VPS50-201ENST00000251739 LGALS2P05162 132 aa11.92□□□□□ -0.5
VPS50-201ENST00000251739 COL9A3Q14050 684 aaPredicted RBP11.92□□□□□ -0.5
VPS50-201ENST00000251739 SART3Q15020 963 aaKnown RBP11.92□□□□□ -0.5
VPS50-201ENST00000251739 METTL7BQ6UX53 244 aa11.92□□□□□ -0.5
VPS50-201ENST00000251739 FCHSD1Q86WN1 690 aa11.92□□□□□ -0.5
VPS50-201ENST00000251739 MICALL1Q8N3F8 863 aa11.92□□□□□ -0.5
VPS50-201ENST00000251739 RAD9AQ99638 391 aa11.92□□□□□ -0.5
VPS50-201ENST00000251739 MTA3Q9BTC8 594 aa11.92□□□□□ -0.5
VPS50-201ENST00000251739 ADAM33Q9BZ11 813 aa11.92□□□□□ -0.5
VPS50-201ENST00000251739 ERICH2A1L162 156 aa11.91□□□□□ -0.5
VPS50-201ENST00000251739 H3BRB1 525 aa11.91□□□□□ -0.5
VPS50-201ENST00000251739 MEIS2O14770 477 aa11.91□□□□□ -0.5
VPS50-201ENST00000251739 SORBS3O60504 671 aa11.91□□□□□ -0.5
VPS50-201ENST00000251739 CAND2O75155 1236 aa11.91□□□□□ -0.5
VPS50-201ENST00000251739 DDAH1O94760 285 aa11.91□□□□□ -0.5
VPS50-201ENST00000251739 SMIM10L2AP0DMW4 78 aa11.91□□□□□ -0.5
VPS50-201ENST00000251739 SMIM10L2BP0DMW5 78 aa11.91□□□□□ -0.5
VPS50-201ENST00000251739 SMARCA1P28370 1054 aa11.91□□□□□ -0.5
VPS50-201ENST00000251739 KCNQ1P51787 676 aa11.91□□□□□ -0.5
VPS50-201ENST00000251739 ERVK-21P61565 698 aa11.91□□□□□ -0.5
VPS50-201ENST00000251739 ADAM17P78536 824 aa11.91□□□□□ -0.5
VPS50-201ENST00000251739 HTRA4P83105 476 aaPredicted RBP11.91□□□□□ -0.5
VPS50-201ENST00000251739 AAK1Q2M2I8 961 aa11.91□□□□□ -0.5
VPS50-201ENST00000251739 PLEKHG4Q58EX7 1191 aa11.91□□□□□ -0.5
VPS50-201ENST00000251739 PCNX4Q63HM2 1172 aa11.91□□□□□ -0.5
VPS50-201ENST00000251739 CATIPQ7Z7H3 387 aa11.91□□□□□ -0.5
VPS50-201ENST00000251739 ZNF654Q8IZM8 581 aa11.91□□□□□ -0.5
VPS50-201ENST00000251739 GDPD5Q8WTR4 605 aa11.91□□□□□ -0.5
VPS50-201ENST00000251739 NECAB3Q96P71 396 aaPredicted RBP11.91□□□□□ -0.5
VPS50-201ENST00000251739 GPR20Q99678 358 aa11.91□□□□□ -0.5
VPS50-201ENST00000251739 TUT1Q9H6E5 874 aaKnown RBP11.91□□□□□ -0.5
VPS50-201ENST00000251739 LMCD1Q9NZU5 365 aa11.91□□□□□ -0.5
VPS50-201ENST00000251739 COG5Q9UP83 839 aa11.91□□□□□ -0.5
VPS50-201ENST00000251739 TELO2Q9Y4R8 837 aa11.91□□□□□ -0.5
VPS50-201ENST00000251739 SUPT16HQ9Y5B9 1047 aaKnown RBP11.91□□□□□ -0.5
VPS50-201ENST00000251739 RBM8AQ9Y5S9 174 aaKnown RBP11.91□□□□□ -0.5
VPS50-201ENST00000251739 LOXHD1Q8IVV2 1947 aa11.91□□□□□ -0.5
VPS50-201ENST00000251739 TTC3P53804 2025 aa11.91□□□□□ -0.5
VPS50-201ENST00000251739 C17orf102A2RUQ5 167 aa11.9□□□□□ -0.5
VPS50-201ENST00000251739 RSPH10B2B2RC85 870 aa11.9□□□□□ -0.5
VPS50-201ENST00000251739 FIBPO43427 364 aa11.9□□□□□ -0.5
VPS50-201ENST00000251739 RSPH10BP0C881 870 aa11.9□□□□□ -0.5
VPS50-201ENST00000251739 IKBKEQ14164 716 aa11.9□□□□□ -0.5
VPS50-201ENST00000251739 NEDD9Q14511 834 aa11.9□□□□□ -0.5
VPS50-201ENST00000251739 GNPTABQ3T906 1256 aa11.9□□□□□ -0.5
VPS50-201ENST00000251739 XRRA1Q6P2D8 792 aa11.9□□□□□ -0.5
VPS50-201ENST00000251739 TRIM50Q86XT4 487 aa11.9□□□□□ -0.5
VPS50-201ENST00000251739 DBF4BQ8NFT6 615 aa11.9□□□□□ -0.5
VPS50-201ENST00000251739 SENP7Q9BQF6 1050 aa11.9□□□□□ -0.5
VPS50-201ENST00000251739 USP26Q9BXU7 913 aa11.9□□□□□ -0.5
VPS50-201ENST00000251739 OSBPL7Q9BZF2 842 aa11.9□□□□□ -0.5
VPS50-201ENST00000251739 LSG1Q9H089 658 aaKnown RBP11.9□□□□□ -0.5
VPS50-201ENST00000251739 RNPEPQ9H4A4 650 aa11.9□□□□□ -0.5
VPS50-201ENST00000251739 MLXIPQ9HAP2 919 aa11.9□□□□□ -0.5
VPS50-201ENST00000251739 PIEZO1Q92508 2521 aa11.89□□□□□ -0.51
VPS50-201ENST00000251739 KIAA1671Q9BY89 1806 aa11.89□□□□□ -0.51
VPS50-201ENST00000251739 TULP1O00294 542 aaPredicted RBP11.89□□□□□ -0.51
VPS50-201ENST00000251739 SH2B2O14492 632 aaPredicted RBP11.89□□□□□ -0.51
VPS50-201ENST00000251739 TREHO43280 583 aa11.89□□□□□ -0.51
VPS50-201ENST00000251739 PLEKHA8P1O95397 391 aa11.89□□□□□ -0.51
VPS50-201ENST00000251739 KIF5BP33176 963 aa11.89□□□□□ -0.51
VPS50-201ENST00000251739 THPOP40225 353 aa11.89□□□□□ -0.51
VPS50-201ENST00000251739 USP17L6PQ6QN14 398 aa11.89□□□□□ -0.51
VPS50-201ENST00000251739 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.89□□□□□ -0.51
VPS50-201ENST00000251739 CYFIP1Q7L576 1253 aa11.89□□□□□ -0.51
VPS50-201ENST00000251739 ATP6V0A1Q93050 837 aa11.89□□□□□ -0.51
VPS50-201ENST00000251739 TGS1Q96RS0 853 aaKnown RBP11.89□□□□□ -0.51
VPS50-201ENST00000251739 ZBED2Q9BTP6 218 aa11.89□□□□□ -0.51
VPS50-201ENST00000251739 MYL10Q9BUA6 226 aa11.89□□□□□ -0.51
VPS50-201ENST00000251739 SUGCTQ9HAC7 445 aa11.89□□□□□ -0.51
VPS50-201ENST00000251739 MUC6Q6W4X9 2439 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms