RNA–Protein interactions for RNA: YOR005C

DNL4, Transcript of DNA ligase required for nonhomologous end-joining (NHEJ), yeastyeast

Gene DNL4, Length 2,835 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DNL4YOR005C YMR178WQ03219 274 aaKnown RBP2.52□□□□□ -2.01
DNL4YOR005C CDA2Q06703 312 aa2.52□□□□□ -2.01
DNL4YOR005C YPR078CQ06813 372 aa2.52□□□□□ -2.01
DNL4YOR005C CYK3Q07533 885 aa2.52□□□□□ -2.01
DNL4YOR005C RKM1Q08961 583 aaPredicted RBP2.52□□□□□ -2.01
DNL4YOR005C NCE102Q12207 173 aaRIP-Chip data2.52□□□□□ -2.01not detected
DNL4YOR005C NTO1Q12311 748 aa2.52□□□□□ -2.01
DNL4YOR005C ADE5,7P07244 802 aaKnown RBP2.51□□□□□ -2.01
DNL4YOR005C COQ1P18900 473 aa2.51□□□□□ -2.01
DNL4YOR005C TYR1P20049 452 aa2.51□□□□□ -2.01
DNL4YOR005C GAC1P28006 793 aa2.51□□□□□ -2.01
DNL4YOR005C ASC1P38011 319 aaKnown RBP2.51□□□□□ -2.01
DNL4YOR005C ARA1P38115 344 aa2.51□□□□□ -2.01
DNL4YOR005C PPS1P38148 807 aa2.51□□□□□ -2.01
DNL4YOR005C ARP1P38696 384 aa2.51□□□□□ -2.01
DNL4YOR005C MIT1P40002 666 aa2.51□□□□□ -2.01
DNL4YOR005C RPS10BP46784 105 aaKnown RBP2.51□□□□□ -2.01
DNL4YOR005C RPA34P47006 233 aaPredicted RBP2.51□□□□□ -2.01
DNL4YOR005C KAP114P53067 1004 aa2.51□□□□□ -2.01
DNL4YOR005C YGL117WP53133 265 aa2.51□□□□□ -2.01
DNL4YOR005C RRN5Q02983 363 aa2.51□□□□□ -2.01
DNL4YOR005C ARO80Q04052 950 aa2.51□□□□□ -2.01
DNL4YOR005C ATG17Q06410 417 aa2.51□□□□□ -2.01
DNL4YOR005C MRH1Q12117 320 aaPredicted RBP2.51□□□□□ -2.01
DNL4YOR005C SGT2Q12118 346 aaKnown RBP2.51□□□□□ -2.01
DNL4YOR005C NDJ1Q12366 352 aa2.51□□□□□ -2.01
DNL4YOR005C CBP2P03874 630 aaPredicted RBP2.51□□□□□ -2.01
DNL4YOR005C RHO2P06781 192 aa2.51□□□□□ -2.01
DNL4YOR005C PEP4P07267 405 aaKnown RBP2.51□□□□□ -2.01
DNL4YOR005C RIP1P08067 215 aa2.51□□□□□ -2.01
DNL4YOR005C SRV2P17555 526 aaKnown RBP2.51□□□□□ -2.01
DNL4YOR005C CKA2P19454 339 aa2.51□□□□□ -2.01
DNL4YOR005C KRE2P27809 442 aa2.51□□□□□ -2.01
DNL4YOR005C MRPL9P31334 269 aa2.51□□□□□ -2.01
DNL4YOR005C VPH2P32341 215 aa2.51□□□□□ -2.01
DNL4YOR005C TRM2P33753 639 aa2.51□□□□□ -2.01
DNL4YOR005C YMC2P38087 329 aa2.51□□□□□ -2.01
DNL4YOR005C KEL1P38853 1164 aaKnown RBP2.51□□□□□ -2.01
DNL4YOR005C YHR210CP38893 341 aa2.51□□□□□ -2.01
DNL4YOR005C MBB1P39534 108 aa2.51□□□□□ -2.01
DNL4YOR005C INA22P40576 216 aa2.51□□□□□ -2.01
DNL4YOR005C YNL320WP42840 284 aa2.51□□□□□ -2.01
DNL4YOR005C RMD9P53140 646 aaKnown RBP2.51□□□□□ -2.01
DNL4YOR005C YPR003CP53394 754 aa2.51□□□□□ -2.01
DNL4YOR005C DSL1P53847 754 aa2.51□□□□□ -2.01
DNL4YOR005C BET4Q00618 327 aa2.51□□□□□ -2.01
DNL4YOR005C YVH1Q02256 364 aaKnown RBP2.51□□□□□ -2.01
DNL4YOR005C EGD1Q02642 157 aaKnown RBP2.51□□□□□ -2.01
DNL4YOR005C EMI2Q04409 500 aaKnown RBP2.51□□□□□ -2.01
DNL4YOR005C RAD34Q06665 692 aa2.51□□□□□ -2.01
DNL4YOR005C YLR040CQ07988 224 aa2.51□□□□□ -2.01
DNL4YOR005C GSH2Q08220 491 aa2.51□□□□□ -2.01
DNL4YOR005C RRD2Q12461 358 aa2.51□□□□□ -2.01
DNL4YOR005C ILV5P06168 395 aaKnown RBP2.5□□□□□ -2.01
DNL4YOR005C STE3P06783 470 aa2.5□□□□□ -2.01
DNL4YOR005C COR1P07256 457 aa2.5□□□□□ -2.01
DNL4YOR005C THR4P16120 514 aaKnown RBP2.5□□□□□ -2.01
DNL4YOR005C RPC25P35718 212 aa2.5□□□□□ -2.01
DNL4YOR005C MYO3P36006 1272 aa2.5□□□□□ -2.01
DNL4YOR005C MMS4P38257 691 aa2.5□□□□□ -2.01
DNL4YOR005C PCA1P38360 1216 aa2.5□□□□□ -2.01
DNL4YOR005C MMS21P38632 267 aa2.5□□□□□ -2.01
DNL4YOR005C DBP8P38719 431 aa2.5□□□□□ -2.01
DNL4YOR005C SMX2P40204 77 aaKnown RBP2.5□□□□□ -2.01
DNL4YOR005C SDS3P40505 327 aa2.5□□□□□ -2.01
DNL4YOR005C ULP2P40537 1034 aaPredicted RBP2.5□□□□□ -2.01
DNL4YOR005C CDC1P40986 491 aa2.5□□□□□ -2.01
DNL4YOR005C YFL015CP43578 164 aa2.5□□□□□ -2.01
DNL4YOR005C LOC1P43586 204 aaPredicted RBP2.5□□□□□ -2.01
DNL4YOR005C BPL1P48445 690 aaPredicted RBP2.5□□□□□ -2.01
DNL4YOR005C BRO1P48582 844 aa2.5□□□□□ -2.01
DNL4YOR005C CPR8P53728 308 aa2.5□□□□□ -2.01
DNL4YOR005C ECM18Q04623 453 aa2.5□□□□□ -2.01
DNL4YOR005C TAF9Q05027 157 aa2.5□□□□□ -2.01
DNL4YOR005C ADE13Q05911 482 aaKnown RBP2.5□□□□□ -2.01
DNL4YOR005C ARO10Q06408 635 aa2.5□□□□□ -2.01
DNL4YOR005C DIS3Q08162 1001 aaKnown RBP2.5□□□□□ -2.01
DNL4YOR005C IES3Q12345 250 aa2.5□□□□□ -2.01
DNL4YOR005C AHA1Q12449 350 aaKnown RBP2.5□□□□□ -2.01
DNL4YOR005C PFK27Q12471 397 aaPredicted RBP2.5□□□□□ -2.01
DNL4YOR005C COX3P00420 269 aa2.5□□□□□ -2.01
DNL4YOR005C PUT2P07275 575 aa2.5□□□□□ -2.01
DNL4YOR005C SCH9P11792 824 aaKnown RBP2.5□□□□□ -2.01
DNL4YOR005C SNA3P14359 133 aa2.5□□□□□ -2.01
DNL4YOR005C PUT4P15380 627 aa2.5□□□□□ -2.01
DNL4YOR005C MAK31P23059 88 aa2.5□□□□□ -2.01
DNL4YOR005C CNA1P23287 553 aa2.5□□□□□ -2.01
DNL4YOR005C SGV1P23293 657 aaKnown RBP2.5□□□□□ -2.01
DNL4YOR005C TOD6P34219 525 aa2.5□□□□□ -2.01
DNL4YOR005C YBR062CP38239 180 aa2.5□□□□□ -2.01
DNL4YOR005C MSG5P38590 489 aa2.5□□□□□ -2.01
DNL4YOR005C RFC3P38629 340 aa2.5□□□□□ -2.01
DNL4YOR005C TOM71P38825 639 aaKnown RBP2.5□□□□□ -2.01
DNL4YOR005C ANS1P38832 159 aa2.5□□□□□ -2.01
DNL4YOR005C OCA2P53949 197 aa2.5□□□□□ -2.01
DNL4YOR005C AAT1Q01802 451 aa2.5□□□□□ -2.01
DNL4YOR005C SHR3Q02774 210 aa2.5□□□□□ -2.01
DNL4YOR005C MRPL1Q04599 285 aa2.5□□□□□ -2.01
DNL4YOR005C MDM30Q05930 598 aa2.5□□□□□ -2.01
DNL4YOR005C YLR455WQ06188 304 aa2.5□□□□□ -2.01
Retrieved 100 of 5,963 RNA–protein pairs in 12.5 ms