RNA–Protein interactions for RNA: YMR200W

ROT1, Transcript of Molecular chaperone involved in protein folding in ER, yeast

Gene ROT1, Length 771 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ROT1	YMR200W	SPE2	P21182	396 aa		4.66	□□□□□ -1.66
ROT1	YMR200W	OSM1	P21375	501 aa	Known RBP	4.66	□□□□□ -1.66
ROT1	YMR200W	HXT2	P23585	541 aa		4.66	□□□□□ -1.66
ROT1	YMR200W	YCR016W	P25617	290 aa	Known RBP	4.66	□□□□□ -1.66
ROT1	YMR200W	KRE2	P27809	442 aa		4.66	□□□□□ -1.66
ROT1	YMR200W	ICL1	P28240	557 aa	Predicted RBP	4.66	□□□□□ -1.66
ROT1	YMR200W	LAC1	P28496	418 aa		4.66	□□□□□ -1.66
ROT1	YMR200W	PSO2	P30620	661 aa		4.66	□□□□□ -1.66
ROT1	YMR200W	RAD23	P32628	398 aa	Known RBP	4.66	□□□□□ -1.66
ROT1	YMR200W	PAD1	P33751	242 aa	Known RBP RIP-Chip data	4.66	□□□□□ -1.66	not detected
ROT1	YMR200W	RPL32	P38061	130 aa	Known RBP	4.66	□□□□□ -1.66
ROT1	YMR200W	OLA1	P38219	394 aa	Known RBP	4.66	□□□□□ -1.66
ROT1	YMR200W	SPP381	P38282	291 aa	Predicted RBP	4.66	□□□□□ -1.66
ROT1	YMR200W	VHC1	P38329	1120 aa		4.66	□□□□□ -1.66
ROT1	YMR200W	YHR210C	P38893	341 aa		4.66	□□□□□ -1.66
ROT1	YMR200W	ALP1	P38971	573 aa		4.66	□□□□□ -1.66
ROT1	YMR200W	CIN4	P39110	191 aa		4.66	□□□□□ -1.66
ROT1	YMR200W	UTP18	P40362	594 aa	Predicted RBP	4.66	□□□□□ -1.66
ROT1	YMR200W	FMC1	P40491	155 aa		4.66	□□□□□ -1.66
ROT1	YMR200W	OPT1	P40897	799 aa		4.66	□□□□□ -1.66
ROT1	YMR200W	OTU1	P43558	301 aa		4.66	□□□□□ -1.66
ROT1	YMR200W	TOS3	P43637	560 aa		4.66	□□□□□ -1.66
ROT1	YMR200W	ATG27	P46989	271 aa		4.66	□□□□□ -1.66
ROT1	YMR200W	BIO3	P50277	480 aa		4.66	□□□□□ -1.66
ROT1	YMR200W	UBP16	Q02863	499 aa		4.66	□□□□□ -1.66
ROT1	YMR200W	SRL4	Q03085	281 aa		4.66	□□□□□ -1.66
ROT1	YMR200W	YDL242W	Q07746	117 aa		4.66	□□□□□ -1.66
ROT1	YMR200W	YOL159C	Q08300	171 aa		4.66	□□□□□ -1.66
ROT1	YMR200W	BTS1	Q12051	335 aa		4.66	□□□□□ -1.66
ROT1	YMR200W	PUF2	Q12221	1075 aa	Known RBP RIP-Chip data	4.66	□□□□□ -1.66	not detected
ROT1	YMR200W	JIP3	O13555	125 aa		4.65	□□□□□ -1.67
ROT1	YMR200W	ARG4	P04076	463 aa	Predicted RBP	4.65	□□□□□ -1.67
ROT1	YMR200W	RHO2	P06781	192 aa		4.65	□□□□□ -1.67
ROT1	YMR200W	ADE5,7	P07244	802 aa	Known RBP	4.65	□□□□□ -1.67
ROT1	YMR200W	PET111	P08468	800 aa		4.65	□□□□□ -1.67
ROT1	YMR200W	PCT1	P13259	424 aa		4.65	□□□□□ -1.67
ROT1	YMR200W	KGD2	P19262	463 aa	Predicted RBP	4.65	□□□□□ -1.67
ROT1	YMR200W	AMD2	P22580	549 aa		4.65	□□□□□ -1.67
ROT1	YMR200W	YPS1	P32329	569 aa		4.65	□□□□□ -1.67
ROT1	YMR200W	BUD2	P33314	1104 aa		4.65	□□□□□ -1.67
ROT1	YMR200W	YKL071W	P36086	256 aa		4.65	□□□□□ -1.67
ROT1	YMR200W	YKL023W	P36103	277 aa	Known RBP	4.65	□□□□□ -1.67
ROT1	YMR200W	GPI16	P38875	610 aa		4.65	□□□□□ -1.67
ROT1	YMR200W	YML053C	Q04978	212 aa		4.65	□□□□□ -1.67
ROT1	YMR200W	POS5	Q06892	414 aa		4.65	□□□□□ -1.67
ROT1	YMR200W	BSC6	Q08280	497 aa		4.65	□□□□□ -1.67
ROT1	YMR200W	PEX27	Q08580	376 aa		4.65	□□□□□ -1.67
ROT1	YMR200W	SPO24	Q3E752	67 aa		4.65	□□□□□ -1.67
ROT1	YMR200W	COX3	P00420	269 aa		4.64	□□□□□ -1.67
ROT1	YMR200W	COR1	P07256	457 aa		4.64	□□□□□ -1.67
ROT1	YMR200W	RIP1	P08067	215 aa		4.64	□□□□□ -1.67
ROT1	YMR200W	MAS1	P10507	462 aa		4.64	□□□□□ -1.67
ROT1	YMR200W	RHB1	P25378	209 aa		4.64	□□□□□ -1.67
ROT1	YMR200W	YUR1	P26725	428 aa		4.64	□□□□□ -1.67
ROT1	YMR200W	CYM1	P32898	989 aa		4.64	□□□□□ -1.67
ROT1	YMR200W	IMP3	P32899	183 aa	Predicted RBP	4.64	□□□□□ -1.67
ROT1	YMR200W	SPC97	P38863	823 aa		4.64	□□□□□ -1.67
ROT1	YMR200W	YHR182W	P38870	785 aa		4.64	□□□□□ -1.67
ROT1	YMR200W	SAP1	P39955	897 aa	Known RBP	4.64	□□□□□ -1.67
ROT1	YMR200W	RPN11	P43588	306 aa	Known RBP	4.64	□□□□□ -1.67
ROT1	YMR200W	TAX4	P47030	604 aa		4.64	□□□□□ -1.67
ROT1	YMR200W	BUD17	P53727	317 aa		4.64	□□□□□ -1.67
ROT1	YMR200W	YNL260C	P53846	198 aa		4.64	□□□□□ -1.67
ROT1	YMR200W	PDR8	Q06149	701 aa		4.64	□□□□□ -1.67
ROT1	YMR200W	ICT1	Q12385	394 aa		4.64	□□□□□ -1.67
ROT1	YMR200W	RAV1	P47104	1357 aa		4.64	□□□□□ -1.67
ROT1	YMR200W	NFT1	P0CE68	1218 aa		4.63	□□□□□ -1.67
ROT1	YMR200W	RVS161	P25343	265 aa	Known RBP	4.63	□□□□□ -1.67
ROT1	YMR200W	GSY2	P27472	705 aa		4.63	□□□□□ -1.67
ROT1	YMR200W	TMT1	P32643	299 aa		4.63	□□□□□ -1.67
ROT1	YMR200W	NRP1	P32770	719 aa	Known RBP RIP-Chip data	4.63	□□□□□ -1.67	not detected
ROT1	YMR200W	FRE1	P32791	686 aa		4.63	□□□□□ -1.67
ROT1	YMR200W	ECT1	P33412	323 aa		4.63	□□□□□ -1.67
ROT1	YMR200W	RPC25	P35718	212 aa		4.63	□□□□□ -1.67
ROT1	YMR200W	ADE17	P38009	592 aa	Known RBP	4.63	□□□□□ -1.67
ROT1	YMR200W	DUG2	P38149	878 aa		4.63	□□□□□ -1.67
ROT1	YMR200W	TSC10	P38342	320 aa		4.63	□□□□□ -1.67
ROT1	YMR200W	MBB1	P39534	108 aa		4.63	□□□□□ -1.67
ROT1	YMR200W	PRP39	P39682	629 aa	Known RBP	4.63	□□□□□ -1.67
ROT1	YMR200W	ESBP6	P53918	673 aa		4.63	□□□□□ -1.67
ROT1	YMR200W	KTR5	P53966	522 aa	Predicted RBP	4.63	□□□□□ -1.67
ROT1	YMR200W	RPS15	Q01855	142 aa	Known RBP	4.63	□□□□□ -1.67
ROT1	YMR200W	MSC1	Q03104	513 aa		4.63	□□□□□ -1.67
ROT1	YMR200W	TAF12	Q03761	539 aa		4.63	□□□□□ -1.67
ROT1	YMR200W	TRS23	Q03784	219 aa		4.63	□□□□□ -1.67
ROT1	YMR200W	CTS2	Q06350	511 aa		4.63	□□□□□ -1.67
ROT1	YMR200W	YAP7	Q08182	245 aa		4.63	□□□□□ -1.67
ROT1	YMR200W	NUP1	P20676	1076 aa		4.62	□□□□□ -1.67
ROT1	YMR200W	DAL2	P25335	343 aa		4.62	□□□□□ -1.67
ROT1	YMR200W	HXT1	P32465	570 aa		4.62	□□□□□ -1.67
ROT1	YMR200W	YSC83	P32792	385 aa		4.62	□□□□□ -1.67
ROT1	YMR200W	OCT1	P35999	772 aa		4.62	□□□□□ -1.67
ROT1	YMR200W	MAL32	P38158	584 aa		4.62	□□□□□ -1.67
ROT1	YMR200W	QDR3	P38227	689 aa		4.62	□□□□□ -1.67
ROT1	YMR200W	EFM2	P38347	419 aa		4.62	□□□□□ -1.67
ROT1	YMR200W	YMR262W	P38430	313 aa		4.62	□□□□□ -1.67
ROT1	YMR200W	DBP8	P38719	431 aa		4.62	□□□□□ -1.67
ROT1	YMR200W	STN1	P38960	494 aa		4.62	□□□□□ -1.67
ROT1	YMR200W	PCF11	P39081	626 aa	Predicted RBP	4.62	□□□□□ -1.67
ROT1	YMR200W	YJL118W	P47022	219 aa		4.62	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 14 ms