RNA–Protein interactions for RNA: YML046W

PRP39, Transcript of U1 snRNP protein involved in splicing, yeast

Gene PRP39, Length 1,890 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PRP39	YML046W	TFC6	Q06339	672 aa		0.65	□□□□□ -2.3
PRP39	YML046W	RRD2	Q12461	358 aa		0.65	□□□□□ -2.3
PRP39	YML046W	NUP192	P47054	1683 aa		0.65	□□□□□ -2.31
PRP39	YML046W	SKI3	P17883	1432 aa	Known RBP	0.65	□□□□□ -2.31
PRP39	YML046W	URA2	P07259	2214 aa	Known RBP	0.65	□□□□□ -2.31
PRP39	YML046W	CSF1	Q12150	2958 aa		0.65	□□□□□ -2.31
PRP39	YML046W	NUP188	P52593	1655 aa	Known RBP	0.65	□□□□□ -2.31
PRP39	YML046W	IQG1	Q12280	1495 aa		0.65	□□□□□ -2.31
PRP39	YML046W	SNF1	P06782	633 aa	Known RBP	0.65	□□□□□ -2.31
PRP39	YML046W	CBP6	P07253	162 aa	Predicted RBP	0.65	□□□□□ -2.31
PRP39	YML046W	CDC24	P11433	854 aa	Predicted RBP	0.65	□□□□□ -2.31
PRP39	YML046W	SLY1	P22213	666 aa		0.65	□□□□□ -2.31
PRP39	YML046W	TIP1	P27654	210 aa	Predicted RBP	0.65	□□□□□ -2.31
PRP39	YML046W	PRR1	P28708	518 aa		0.65	□□□□□ -2.31
PRP39	YML046W	DTR1	P38125	572 aa		0.65	□□□□□ -2.31
PRP39	YML046W	MSR1	P38714	643 aa		0.65	□□□□□ -2.31
PRP39	YML046W	SSU1	P41930	458 aa		0.65	□□□□□ -2.31
PRP39	YML046W	ATP22	P50273	684 aa	Predicted RBP	0.65	□□□□□ -2.31
PRP39	YML046W	MTQ1	P53944	314 aa		0.65	□□□□□ -2.31
PRP39	YML046W	SNO4	Q04902	237 aa		0.65	□□□□□ -2.31
PRP39	YML046W	DNL4	Q08387	944 aa	Predicted RBP	0.65	□□□□□ -2.31
PRP39	YML046W	HSP33	Q08914	237 aa	Known RBP	0.65	□□□□□ -2.31
PRP39	YML046W	HSP32	Q08992	237 aa		0.65	□□□□□ -2.31
PRP39	YML046W	JID1	Q12350	301 aa		0.65	□□□□□ -2.31
PRP39	YML046W	SKM1	Q12469	655 aa		0.65	□□□□□ -2.31
PRP39	YML046W	TY1B-BR	Q12193	1756 aa		0.64	□□□□□ -2.31
PRP39	YML046W	TY1B-GR3	Q12316	1755 aa		0.64	□□□□□ -2.31
PRP39	YML046W	TY1B-OR	Q92393	1755 aa		0.64	□□□□□ -2.31
PRP39	YML046W	SPT7	P35177	1332 aa		0.64	□□□□□ -2.31
PRP39	YML046W	RIM15	P43565	1770 aa		0.64	□□□□□ -2.31
PRP39	YML046W	TY1B-A	O13527	1196 aa	Known RBP	0.64	□□□□□ -2.31
PRP39	YML046W	MRP13	P12686	339 aa		0.64	□□□□□ -2.31
PRP39	YML046W	PRP2	P20095	876 aa	Predicted RBP	0.64	□□□□□ -2.31
PRP39	YML046W	ATP11	P32453	318 aa		0.64	□□□□□ -2.31
PRP39	YML046W	YBL029W	P38201	376 aa		0.64	□□□□□ -2.31
PRP39	YML046W	YER010C	P40011	234 aa		0.64	□□□□□ -2.31
PRP39	YML046W	YIP5	P53108	310 aa		0.64	□□□□□ -2.31
PRP39	YML046W	RAX2	Q12465	1220 aa		0.64	□□□□□ -2.31
PRP39	YML046W	MLP2	P40457	1679 aa		0.64	□□□□□ -2.31
PRP39	YML046W	OLE1	P21147	510 aa	Known RBP	0.63	□□□□□ -2.31
PRP39	YML046W	PEP3	P27801	918 aa		0.63	□□□□□ -2.31
PRP39	YML046W	GPI18	P38211	433 aa		0.63	□□□□□ -2.31
PRP39	YML046W	MBB1	P39534	108 aa		0.63	□□□□□ -2.31
PRP39	YML046W	KAP123	P40069	1113 aa	Known RBP	0.63	□□□□□ -2.31
PRP39	YML046W	SYG1	P40528	902 aa		0.63	□□□□□ -2.31
PRP39	YML046W	YFR057W	P43625	151 aa		0.63	□□□□□ -2.31
PRP39	YML046W	ARC1	P46672	376 aa	Known RBP	0.63	□□□□□ -2.31
PRP39	YML046W	DLD2	P46681	530 aa	Known RBP	0.63	□□□□□ -2.31
PRP39	YML046W	TRS85	P46944	698 aa		0.63	□□□□□ -2.31
PRP39	YML046W	AIM22	P47051	409 aa		0.63	□□□□□ -2.31
PRP39	YML046W	MDE1	P47095	244 aa		0.63	□□□□□ -2.31
PRP39	YML046W	OCA1	P50946	238 aa	Predicted RBP	0.63	□□□□□ -2.31
PRP39	YML046W	YIP1	P53039	248 aa		0.63	□□□□□ -2.31
PRP39	YML046W	MRD1	Q06106	887 aa	Known RBP	0.63	□□□□□ -2.31
PRP39	YML046W	YPR195C	Q06594	109 aa		0.63	□□□□□ -2.31
PRP39	YML046W	FOL3	Q12676	427 aa	Predicted RBP	0.63	□□□□□ -2.31
PRP39	YML046W	YRF1-3	P0CX14	1859 aa		0.63	□□□□□ -2.31
PRP39	YML046W	YRF1-7	P0CX15	1859 aa		0.63	□□□□□ -2.31
PRP39	YML046W	YRF1-6	P53819	1859 aa		0.63	□□□□□ -2.31
PRP39	YML046W	CYC3	P06182	269 aa		0.63	□□□□□ -2.31
PRP39	YML046W	YCL042W	P25572	119 aa		0.63	□□□□□ -2.31
PRP39	YML046W	KAR9	P32526	644 aa		0.63	□□□□□ -2.31
PRP39	YML046W	YME2	P32843	850 aa		0.63	□□□□□ -2.31
PRP39	YML046W	PTK1	P36002	662 aa	Predicted RBP	0.63	□□□□□ -2.31
PRP39	YML046W	PSY4	P38193	441 aa		0.63	□□□□□ -2.31
PRP39	YML046W	OXA1	P39952	402 aa		0.63	□□□□□ -2.31
PRP39	YML046W	BIR1	P47134	954 aa		0.63	□□□□□ -2.31
PRP39	YML046W	YPS5	P53057	165 aa		0.63	□□□□□ -2.31
PRP39	YML046W	CAF130	P53280	1122 aa	Predicted RBP	0.63	□□□□□ -2.31
PRP39	YML046W	DSL1	P53847	754 aa		0.63	□□□□□ -2.31
PRP39	YML046W	NCS2	P53923	493 aa	Predicted RBP	0.63	□□□□□ -2.31
PRP39	YML046W	TPS1	Q00764	495 aa	Known RBP	0.63	□□□□□ -2.31
PRP39	YML046W	IOC4	Q04213	475 aa		0.63	□□□□□ -2.31
PRP39	YML046W	YOR097C	Q12274	175 aa	Predicted RBP	0.63	□□□□□ -2.31
PRP39	YML046W	YOL087C	Q99247	1116 aa		0.63	□□□□□ -2.31
PRP39	YML046W	ADH1	P00330	348 aa	Known RBP	0.62	□□□□□ -2.31
PRP39	YML046W	TEF1	P02994	458 aa	Known RBP	0.62	□□□□□ -2.31
PRP39	YML046W	ARG4	P04076	463 aa	Predicted RBP	0.62	□□□□□ -2.31
PRP39	YML046W	POL4	P25615	582 aa		0.62	□□□□□ -2.31
PRP39	YML046W	SMY1	P32364	656 aa	Known RBP	0.62	□□□□□ -2.31
PRP39	YML046W	APE3	P37302	537 aa	Known RBP	0.62	□□□□□ -2.31
PRP39	YML046W	YGL262W	P53054	175 aa		0.62	□□□□□ -2.31
PRP39	YML046W	LCL3	P53153	274 aa		0.62	□□□□□ -2.31
PRP39	YML046W	ARE2	P53629	642 aa	Known RBP	0.62	□□□□□ -2.31
PRP39	YML046W	YPR022C	Q12139	1133 aa		0.62	□□□□□ -2.31
PRP39	YML046W	MHP1	P43638	1398 aa		0.62	□□□□□ -2.31
PRP39	YML046W	AUS1	Q08409	1394 aa		0.62	□□□□□ -2.31
PRP39	YML046W	RPL43A	P0CX25	92 aa	Known RBP	0.61	□□□□□ -2.31
PRP39	YML046W	RPL43B	P0CX26	92 aa		0.61	□□□□□ -2.31
PRP39	YML046W	TPS2	P31688	896 aa	Known RBP	0.61	□□□□□ -2.31
PRP39	YML046W	YGP1	P38616	354 aa	Known RBP	0.61	□□□□□ -2.31
PRP39	YML046W	ECM27	P47144	725 aa		0.61	□□□□□ -2.31
PRP39	YML046W	IMD4	P50094	524 aa	Known RBP	0.61	□□□□□ -2.31
PRP39	YML046W	PIB2	P53191	635 aa		0.61	□□□□□ -2.31
PRP39	YML046W	YLL032C	Q07834	825 aa	Known RBP RIP-Chip data	0.61	□□□□□ -2.31	not detected
PRP39	YML046W	APC2	Q12440	853 aa		0.61	□□□□□ -2.31
PRP39	YML046W	NUP157	P40064	1391 aa	Known RBP	0.61	□□□□□ -2.31
PRP39	YML046W	SEC7	P11075	2009 aa	Known RBP	0.61	□□□□□ -2.31
PRP39	YML046W	DBF20	P32328	564 aa		0.61	□□□□□ -2.31
PRP39	YML046W	HIR2	P32480	875 aa		0.61	□□□□□ -2.31

Retrieved 100 of 5,963 RNA–protein pairs in 17.8 ms