RNA–Protein interactions for RNA: YLL011W

SOF1, Transcript of Protein required for biogenesis of 40S (small) ribosomal subunit, yeast

Gene SOF1, Length 1,470 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SOF1	YLL011W	RRN10	P38204	145 aa		4.21	□□□□□ -1.74
SOF1	YLL011W	SWC5	P38326	303 aa		4.21	□□□□□ -1.74
SOF1	YLL011W	ERG7	P38604	731 aa		4.21	□□□□□ -1.74
SOF1	YLL011W	RRP4	P38792	359 aa	Known RBP	4.21	□□□□□ -1.74
SOF1	YLL011W	PCL5	P38794	229 aa		4.21	□□□□□ -1.74
SOF1	YLL011W	PEX18	P38855	283 aa		4.21	□□□□□ -1.74
SOF1	YLL011W	STN1	P38960	494 aa		4.21	□□□□□ -1.74
SOF1	YLL011W	SNG1	P46950	547 aa		4.21	□□□□□ -1.74
SOF1	YLL011W	EMC2	P47133	292 aa	Known RBP	4.21	□□□□□ -1.74
SOF1	YLL011W	BRO1	P48582	844 aa		4.21	□□□□□ -1.74
SOF1	YLL011W	KEL2	P50090	882 aa		4.21	□□□□□ -1.74
SOF1	YLL011W	MNN10	P50108	393 aa	Known RBP	4.21	□□□□□ -1.74
SOF1	YLL011W	ZPR1	P53303	486 aa	Known RBP	4.21	□□□□□ -1.74
SOF1	YLL011W	APM1	Q00776	475 aa	Predicted RBP	4.21	□□□□□ -1.74
SOF1	YLL011W	YLR455W	Q06188	304 aa		4.21	□□□□□ -1.74
SOF1	YLL011W	THI3	Q07471	609 aa		4.21	□□□□□ -1.74
SOF1	YLL011W	YLR040C	Q07988	224 aa		4.21	□□□□□ -1.74
SOF1	YLL011W	YRF1-2	P40105	1681 aa		4.2	□□□□□ -1.74
SOF1	YLL011W	SCEI	P03882	235 aa		4.2	□□□□□ -1.74
SOF1	YLL011W	ADE4	P04046	510 aa	Known RBP	4.2	□□□□□ -1.74
SOF1	YLL011W	SEC63	P14906	663 aa		4.2	□□□□□ -1.74
SOF1	YLL011W	RPC34	P32910	317 aa		4.2	□□□□□ -1.74
SOF1	YLL011W	TOD6	P34219	525 aa		4.2	□□□□□ -1.74
SOF1	YLL011W	SOR1	P35497	357 aa	Known RBP	4.2	□□□□□ -1.74
SOF1	YLL011W	KKQ8	P36004	724 aa		4.2	□□□□□ -1.74
SOF1	YLL011W	YKT6	P36015	200 aa	Known RBP	4.2	□□□□□ -1.74
SOF1	YLL011W	BNA4	P38169	460 aa		4.2	□□□□□ -1.74
SOF1	YLL011W	QDR3	P38227	689 aa		4.2	□□□□□ -1.74
SOF1	YLL011W	TCM62	P38228	572 aa	Known RBP	4.2	□□□□□ -1.74
SOF1	YLL011W	SUL1	P38359	859 aa		4.2	□□□□□ -1.74
SOF1	YLL011W	ARP1	P38696	384 aa		4.2	□□□□□ -1.74
SOF1	YLL011W	SPC97	P38863	823 aa		4.2	□□□□□ -1.74
SOF1	YLL011W	TFG2	P41896	400 aa	Predicted RBP	4.2	□□□□□ -1.74
SOF1	YLL011W	MND1	P53102	219 aa		4.2	□□□□□ -1.74
SOF1	YLL011W	DRN1	P53255	507 aa	Known RBP	4.2	□□□□□ -1.74
SOF1	YLL011W	DBP6	P53734	629 aa	Known RBP	4.2	□□□□□ -1.74
SOF1	YLL011W	SPO19	Q03029	223 aa		4.2	□□□□□ -1.74
SOF1	YLL011W	INP2	Q03824	705 aa		4.2	□□□□□ -1.74
SOF1	YLL011W	CAB5	Q03941	241 aa		4.2	□□□□□ -1.74
SOF1	YLL011W	SOR2	Q07786	357 aa		4.2	□□□□□ -1.74
SOF1	YLL011W	YOR389W	Q08912	624 aa		4.2	□□□□□ -1.74
SOF1	YLL011W	PUF2	Q12221	1075 aa	Known RBP RIP-Chip data	4.2	□□□□□ -1.74	not detected
SOF1	YLL011W	NUP192	P47054	1683 aa		4.2	□□□□□ -1.74
SOF1	YLL011W	SPS22	P25380	463 aa		4.19	□□□□□ -1.74
SOF1	YLL011W	GID7	P25569	745 aa		4.19	□□□□□ -1.74
SOF1	YLL011W	MSN2	P33748	704 aa		4.19	□□□□□ -1.74
SOF1	YLL011W	YMC2	P38087	329 aa		4.19	□□□□□ -1.74
SOF1	YLL011W	YHR177W	P38867	453 aa		4.19	□□□□□ -1.74
SOF1	YLL011W	PCF11	P39081	626 aa	Predicted RBP	4.19	□□□□□ -1.74
SOF1	YLL011W	CDC1	P40986	491 aa		4.19	□□□□□ -1.74
SOF1	YLL011W	GTO1	P48239	356 aa		4.19	□□□□□ -1.74
SOF1	YLL011W	RIB4	P50861	169 aa	Predicted RBP	4.19	□□□□□ -1.74
SOF1	YLL011W	PYK2	P52489	506 aa	Known RBP	4.19	□□□□□ -1.74
SOF1	YLL011W	YGL117W	P53133	265 aa		4.19	□□□□□ -1.74
SOF1	YLL011W	CPR8	P53728	308 aa		4.19	□□□□□ -1.74
SOF1	YLL011W	ATC1	Q04005	294 aa		4.19	□□□□□ -1.74
SOF1	YLL011W	SEG1	Q04279	960 aa		4.19	□□□□□ -1.74
SOF1	YLL011W	PEX27	Q08580	376 aa		4.19	□□□□□ -1.74
SOF1	YLL011W	RBD2	Q12270	262 aa		4.19	□□□□□ -1.74
SOF1	YLL011W	RAD9	P14737	1309 aa		4.19	□□□□□ -1.74
SOF1	YLL011W	EDE1	P34216	1381 aa		4.19	□□□□□ -1.74
SOF1	YLL011W	IKI3	Q06706	1349 aa	Known RBP	4.18	□□□□□ -1.74
SOF1	YLL011W	PMA1	P05030	918 aa	Known RBP	4.18	□□□□□ -1.74
SOF1	YLL011W	GPA1	P08539	472 aa		4.18	□□□□□ -1.74
SOF1	YLL011W	SSA3	P09435	649 aa	Known RBP	4.18	□□□□□ -1.74
SOF1	YLL011W	SNF3	P10870	884 aa		4.18	□□□□□ -1.74
SOF1	YLL011W	THR4	P16120	514 aa	Known RBP	4.18	□□□□□ -1.74
SOF1	YLL011W	NUP1	P20676	1076 aa		4.18	□□□□□ -1.74
SOF1	YLL011W	HXT2	P23585	541 aa		4.18	□□□□□ -1.74
SOF1	YLL011W	CLB2	P24869	491 aa		4.18	□□□□□ -1.74
SOF1	YLL011W	YCR006C	P25350	157 aa		4.18	□□□□□ -1.74
SOF1	YLL011W	HRR25	P29295	494 aa	Known RBP	4.18	□□□□□ -1.74
SOF1	YLL011W	HSP104	P31539	908 aa	Known RBP	4.18	□□□□□ -1.74
SOF1	YLL011W	ATP11	P32453	318 aa		4.18	□□□□□ -1.74
SOF1	YLL011W	DPH5	P32469	300 aa	Predicted RBP	4.18	□□□□□ -1.74
SOF1	YLL011W	PRP21	P32524	280 aa	Predicted RBP	4.18	□□□□□ -1.74
SOF1	YLL011W	TSA1	P34760	196 aa	Known RBP	4.18	□□□□□ -1.74
SOF1	YLL011W	MIA40	P36046	403 aa		4.18	□□□□□ -1.74
SOF1	YLL011W	YBL028C	P38202	106 aa		4.18	□□□□□ -1.74
SOF1	YLL011W	ALP1	P38971	573 aa		4.18	□□□□□ -1.74
SOF1	YLL011W	POP1	P41812	875 aa		4.18	□□□□□ -1.74
SOF1	YLL011W	TDA10	P42938	290 aa		4.18	□□□□□ -1.74
SOF1	YLL011W	LYS20	P48570	428 aa	Known RBP	4.18	□□□□□ -1.74
SOF1	YLL011W	PHO23	P50947	330 aa		4.18	□□□□□ -1.74
SOF1	YLL011W	BUD32	P53323	261 aa		4.18	□□□□□ -1.74
SOF1	YLL011W	RTT102	P53330	157 aa		4.18	□□□□□ -1.74
SOF1	YLL011W	YNL146W	P53906	100 aa		4.18	□□□□□ -1.74
SOF1	YLL011W	ERV41	Q04651	352 aa		4.18	□□□□□ -1.74
SOF1	YLL011W	YMR310C	Q04867	317 aa	Predicted RBP	4.18	□□□□□ -1.74
SOF1	YLL011W	ATG26	Q06321	1198 aa		4.18	□□□□□ -1.74
SOF1	YLL011W	VAC14	Q06708	880 aa		4.18	□□□□□ -1.74
SOF1	YLL011W	YPR078C	Q06813	372 aa		4.18	□□□□□ -1.74
SOF1	YLL011W	YLL007C	Q07799	665 aa		4.18	□□□□□ -1.74
SOF1	YLL011W	AIM39	Q08223	395 aa		4.18	□□□□□ -1.74
SOF1	YLL011W	PKH2	Q12236	1081 aa	Known RBP	4.18	□□□□□ -1.74
SOF1	YLL011W	YOL107W	Q12239	342 aa		4.18	□□□□□ -1.74
SOF1	YLL011W	SUT2	Q12286	268 aa		4.18	□□□□□ -1.74
SOF1	YLL011W	RRP5	Q05022	1729 aa	Known RBP	4.18	□□□□□ -1.74
SOF1	YLL011W	YPR089W	O13585	888 aa		4.18	□□□□□ -1.74
SOF1	YLL011W	RPL7A	P05737	244 aa	Known RBP	4.18	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 22.5 ms