RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 TMEM110-MUSTN1A8MSY1 372 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 CYTH3O43739 400 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 PIP5K1CO60331 668 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 HEXBP07686 556 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 STT3AP46977 705 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 LLGL1Q15334 1064 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 NUDCD3Q8IVD9 361 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 ZSCAN29Q8IWY8 852 aaPredicted RBP3.87□□□□□ -1.79
SCN1A-221ENST00000641996 RAB3IL1Q8TBN0 382 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 MCUR1Q96AQ8 359 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 ANGPTL2Q9UKU9 493 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 ZKSCAN5Q9Y2L8 839 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 PCDHGA4Q9Y5G9 962 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 GOLGA8AA7E2F4 631 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 PSMD11O00231 422 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 GNB5O14775 395 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 IFFO1Q0D2I5 559 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 MYCT1Q8N699 235 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 KCTD4Q8WVF5 259 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 POF1BQ8WVV4 589 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 UPF1Q92900 1129 aaKnown RBP eCLIP3.87□□□□□ -1.79
SCN1A-221ENST00000641996 FAM192AQ9GZU8 254 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 MAPK8IP1Q9UQF2 711 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 ATP11BQ9Y2G3 1177 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 ANGPT2O15123 496 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 ADCY8P40145 1251 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 GJA9P57773 515 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 SIM2Q14190 667 aaPredicted RBP3.87□□□□□ -1.79
SCN1A-221ENST00000641996 GALNTL5Q7Z4T8 443 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 HEATR4Q86WZ0 1026 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 CCDC33Q8N5R6 958 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 ZNF527Q8NB42 609 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 TRIM62Q9BVG3 475 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 LMCD1Q9NZU5 365 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 MBD3O95983 291 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 IDUAP35475 653 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 DHX34Q14147 1143 aaKnown RBP3.87□□□□□ -1.79
SCN1A-221ENST00000641996 NAA30Q147X3 362 aaPredicted RBP3.87□□□□□ -1.79
SCN1A-221ENST00000641996 ANO4Q32M45 955 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 PPP6R3Q5H9R7 873 aaPredicted RBP3.87□□□□□ -1.79
SCN1A-221ENST00000641996 TBC1D21Q8IYX1 336 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 UBE2OQ9C0C9 1292 aaKnown RBP3.87□□□□□ -1.79
SCN1A-221ENST00000641996 ADAM19Q9H013 955 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 DYSFO75923 2080 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 RAB19A4D1S5 217 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 CCT6AP40227 531 aaKnown RBP3.87□□□□□ -1.79
SCN1A-221ENST00000641996 EIF2B2P49770 351 aaKnown RBP3.87□□□□□ -1.79
SCN1A-221ENST00000641996 C2orf54Q08AI8 447 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 MADCAM1Q13477 382 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 DMC1Q14565 340 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 USH1GQ495M9 461 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 MCTP1Q6DN14 999 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 LUZP2Q86TE4 346 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 EXD1Q8NHP7 514 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 VPS50Q96JG6 964 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 DDX50Q9BQ39 737 aaKnown RBP3.87□□□□□ -1.79
SCN1A-221ENST00000641996 FBXL21Q9UKT6 434 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 SLC45A4Q5BKX6 768 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 FAM83BQ5T0W9 1011 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 B4GALNT4Q76KP1 1039 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 ENOSF1Q7L5Y1 443 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 CEP97Q8IW35 865 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 BRD7Q9NPI1 651 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 STMN1P16949 149 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 CES1P23141 567 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 GJC1P36383 396 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 BMPR2Q13873 1038 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 CNGA3Q16281 694 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 RASIP1Q5U651 963 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 RNF169Q8NCN4 708 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 FAM167BQ9BTA0 163 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 ZSWIM5Q9P217 1185 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 TPCN1Q9ULQ1 816 aa3.87□□□□□ -1.79
SCN1A-221ENST00000641996 FAM86C2PA6NEL3 165 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 A8MV72 311 aaPredicted RBP3.86□□□□□ -1.79
SCN1A-221ENST00000641996 FAM25EA8MYX2 175 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 VWA5AO00534 786 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 HSPA4LO95757 839 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 GHRP10912 638 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 ATF7P17544 494 aaPredicted RBP3.86□□□□□ -1.79
SCN1A-221ENST00000641996 NDUFV2P19404 249 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 CYP4F8P98187 520 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 MCMDC2Q4G0Z9 681 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 ANKS6Q68DC2 871 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 TMC5Q6UXY8 1006 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 C16orf86Q6ZW13 317 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 ERMNQ8TAM6 284 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 RNPC3Q96LT9 517 aaKnown RBP3.86□□□□□ -1.79
SCN1A-221ENST00000641996 RBSNQ9H1K0 784 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 HAUS2Q9NVX0 235 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP3.86□□□□□ -1.79
SCN1A-221ENST00000641996 SMCHD1A6NHR9 2005 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 PLXNB1O43157 2135 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 MYH4Q9Y623 1939 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 CASQ2O14958 399 aaPredicted RBP3.86□□□□□ -1.79
SCN1A-221ENST00000641996 YEATS4O95619 227 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 CPA3P15088 417 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 ZNF76P36508 570 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 STRN3Q13033 797 aa3.86□□□□□ -1.79
SCN1A-221ENST00000641996 NCAPH2Q6IBW4 605 aa3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms