RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 SPARCL1Q14515 664 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 ISM2Q6H9L7 571 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 RRM2BQ7LG56 351 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 WAPLQ7Z5K2 1190 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 NME8Q8N427 588 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 HDDC3Q8N4P3 179 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 L3MBTL4Q8NA19 623 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 CNBD1Q8NA66 436 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 WDR60Q8WVS4 1066 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 ZBBXA8MT70 800 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 FTLP02792 175 aaPredicted RBP3□□□□□ -1.93
SCN1A-219ENST00000641575 CPA3P15088 417 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 POLGP54098 1239 aaPredicted RBP3□□□□□ -1.93
SCN1A-219ENST00000641575 LIN9Q5TKA1 542 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 ANO1Q5XXA6 986 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 TIGD7Q6NT04 549 aaPredicted RBP3□□□□□ -1.93
SCN1A-219ENST00000641575 ARMC6Q6NXE6 501 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 CALR3Q96L12 384 aaKnown RBP3□□□□□ -1.93
SCN1A-219ENST00000641575 ZFYVE28Q9HCC9 887 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 FBXL21Q9UKT6 434 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 DIS3Q9Y2L1 958 aaKnown RBP3□□□□□ -1.93
SCN1A-219ENST00000641575 GMEB1Q9Y692 573 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 SH3TC1Q8TE82 1336 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 CCDC130P13994 396 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 TPP2P29144 1249 aaPredicted RBP3□□□□□ -1.93
SCN1A-219ENST00000641575 SSTR3P32745 418 aaPredicted RBP3□□□□□ -1.93
SCN1A-219ENST00000641575 DDIT3P35638 169 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 CARSP49589 748 aaKnown RBP3□□□□□ -1.93
SCN1A-219ENST00000641575 FSCN1Q16658 493 aaKnown RBP3□□□□□ -1.93
SCN1A-219ENST00000641575 CCDC93Q567U6 631 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 USP13Q92995 863 aaPredicted RBP3□□□□□ -1.93
SCN1A-219ENST00000641575 SLC24A3Q9HC58 644 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 CCDC151A5D8V7 595 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 SCGB2A1O75556 95 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 PAMP19021 973 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 CYP4A11Q02928 519 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 CEP78Q5JTW2 689 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 PEX5LQ8IYB4 626 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 TRIML2Q8N7C3 387 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 FGD4Q96M96 766 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 DNAJC17Q9NVM6 304 aaKnown RBP3□□□□□ -1.93
SCN1A-219ENST00000641575 TLK1Q9UKI8 766 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 TMCC3Q9ULS5 477 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 CC2D2AQ9P2K1 1620 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 N4BP3O15049 544 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 THAP12O43422 761 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 UBA7P41226 1012 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 ALG11Q2TAA5 492 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 SEL1L2Q5TEA6 688 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 KCNV1Q6PIU1 500 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 RTKN2Q8IZC4 609 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 ZNF513Q8N8E2 541 aaPredicted RBP3□□□□□ -1.93
SCN1A-219ENST00000641575 CEP19Q96LK0 163 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 MTA3Q9BTC8 594 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 C1QTNF7Q9BXJ2 289 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 TMEM39AQ9NV64 488 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 COPG2Q9UBF2 871 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 TELO2Q9Y4R8 837 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 HCFC1P51610 2035 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 SYNJ2O15056 1496 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 MYO3BQ8WXR4 1341 aa3□□□□□ -1.93
SCN1A-219ENST00000641575 MED7O43513 233 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 PEX14O75381 377 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 HNRNPCP07910 306 aaKnown RBP eCLIP2.99□□□□□ -1.93
SCN1A-219ENST00000641575 ALDH1A3P47895 512 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 TMED10P49755 219 aaKnown RBP2.99□□□□□ -1.93
SCN1A-219ENST00000641575 POLE2P56282 527 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 NR5A1Q13285 461 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 DLGAP5Q15398 846 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 ELF2Q15723 593 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 IFIT1BQ5T764 474 aaKnown RBP2.99□□□□□ -1.93
SCN1A-219ENST00000641575 WLSQ5T9L3 541 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 RSBN1LQ6PCB5 846 aaPredicted RBP2.99□□□□□ -1.93
SCN1A-219ENST00000641575 TTC13Q8NBP0 860 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 CHURC1Q8WUH1 139 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 TMBIM4Q9HC24 238 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 CHURC1-FNTBB4DL54 471 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 DTNBO60941 627 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 KRT14P02533 472 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 TROVE2P10155 538 aaKnown RBP eCLIP2.99□□□□□ -1.93
SCN1A-219ENST00000641575 TRPC1P48995 793 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 AARSP49588 968 aaKnown RBP eCLIP2.99□□□□□ -1.93
SCN1A-219ENST00000641575 MTMR3Q13615 1198 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 RCN2Q14257 317 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 HDGFL1Q5TGJ6 251 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 FAM160B1Q5W0V3 765 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 ZNF544Q6NX49 715 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 DPP8Q6V1X1 898 aaPredicted RBP2.99□□□□□ -1.93
SCN1A-219ENST00000641575 SLC10A4Q96EP9 437 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 EPAS1Q99814 870 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 OSBPL6Q9BZF3 934 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 C2orf40Q9H1Z8 148 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 PAPOLBQ9NRJ5 636 aaKnown RBP2.99□□□□□ -1.93
SCN1A-219ENST00000641575 OLA1Q9NTK5 396 aaKnown RBP2.99□□□□□ -1.93
SCN1A-219ENST00000641575 MIS18AQ9NYP9 233 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 ABI3Q9P2A4 366 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 STXBP3O00186 592 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 SERPINB2P05120 415 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 TRAPPC10P48553 1259 aa2.99□□□□□ -1.93
SCN1A-219ENST00000641575 UBE2HP62256 183 aa2.99□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms