RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 C16orf70Q9BSU1 422 aa17.41■□□□□ 0.38
SYNE2-228ENST00000639659 IFIH1Q9BYX4 1025 aaKnown RBP17.41■□□□□ 0.38
SYNE2-228ENST00000639659 TUT1Q9H6E5 874 aaKnown RBP17.41■□□□□ 0.38
SYNE2-228ENST00000639659 CNNM2Q9H8M5 875 aa17.41■□□□□ 0.38
SYNE2-228ENST00000639659 NLRC5Q86WI3 1866 aa17.41■□□□□ 0.38
SYNE2-228ENST00000639659 DOCK5Q9H7D0 1870 aa17.41■□□□□ 0.38
SYNE2-228ENST00000639659 HOXD8P13378 290 aaPredicted RBP17.4■□□□□ 0.38
SYNE2-228ENST00000639659 NT5C2P49902 561 aa17.4■□□□□ 0.38
SYNE2-228ENST00000639659 HTRA4P83105 476 aaPredicted RBP17.4■□□□□ 0.38
SYNE2-228ENST00000639659 UTP14CQ5TAP6 766 aaKnown RBP17.4■□□□□ 0.38
SYNE2-228ENST00000639659 VSIG10LQ86VR7 867 aa17.4■□□□□ 0.38
SYNE2-228ENST00000639659 TRIM50Q86XT4 487 aa17.4■□□□□ 0.38
SYNE2-228ENST00000639659 BANK1Q8NDB2 785 aa17.4■□□□□ 0.38
SYNE2-228ENST00000639659 PIGSQ96S52 555 aa17.4■□□□□ 0.38
SYNE2-228ENST00000639659 OSBPL7Q9BZF2 842 aa17.4■□□□□ 0.38
SYNE2-228ENST00000639659 BCAS3Q9H6U6 928 aa17.4■□□□□ 0.38
SYNE2-228ENST00000639659 GRXCR2A6NFK2 248 aa17.39■□□□□ 0.37
SYNE2-228ENST00000639659 STOX1Q6ZVD7 989 aa17.39■□□□□ 0.37
SYNE2-228ENST00000639659 TMEM192Q8IY95 271 aa17.39■□□□□ 0.37
SYNE2-228ENST00000639659 SP7Q8TDD2 431 aaPredicted RBP17.39■□□□□ 0.37
SYNE2-228ENST00000639659 SAMD11Q96NU1 681 aa17.39■□□□□ 0.37
SYNE2-228ENST00000639659 DSCC1Q9BVC3 393 aa17.39■□□□□ 0.37
SYNE2-228ENST00000639659 RNPEPQ9H4A4 650 aa17.39■□□□□ 0.37
SYNE2-228ENST00000639659 SETD4Q9NVD3 440 aa17.39■□□□□ 0.37
SYNE2-228ENST00000639659 CLDND1Q9NY35 253 aa17.39■□□□□ 0.37
SYNE2-228ENST00000639659 RTEL1Q9NZ71 1219 aa17.39■□□□□ 0.37
SYNE2-228ENST00000639659 MAD2L2Q9UI95 211 aa17.39■□□□□ 0.37
SYNE2-228ENST00000639659 ARIH1Q9Y4X5 557 aaPredicted RBP17.39■□□□□ 0.37
SYNE2-228ENST00000639659 PRR33A8MZF0 331 aa17.38■□□□□ 0.37
SYNE2-228ENST00000639659 HIP1O00291 1037 aa17.38■□□□□ 0.37
SYNE2-228ENST00000639659 CTNNB1P35222 781 aa17.38■□□□□ 0.37
SYNE2-228ENST00000639659 ARHGAP4P98171 946 aa17.38■□□□□ 0.37
SYNE2-228ENST00000639659 CLUL1Q15846 466 aa17.38■□□□□ 0.37
SYNE2-228ENST00000639659 GNPTABQ3T906 1256 aa17.38■□□□□ 0.37
SYNE2-228ENST00000639659 CYB5R4Q7L1T6 521 aa17.38■□□□□ 0.37
SYNE2-228ENST00000639659 CYFIP1Q7L576 1253 aa17.38■□□□□ 0.37
SYNE2-228ENST00000639659 ALYREFQ86V81 257 aaKnown RBP17.38■□□□□ 0.37
SYNE2-228ENST00000639659 CHD1LQ86WJ1 897 aa17.38■□□□□ 0.37
SYNE2-228ENST00000639659 PLEKHM2Q8IWE5 1019 aa17.38■□□□□ 0.37
SYNE2-228ENST00000639659 NSUN3Q9H649 340 aaKnown RBP17.38■□□□□ 0.37
SYNE2-228ENST00000639659 BAZ2BQ9UIF8 2168 aaKnown RBP17.38■□□□□ 0.37
SYNE2-228ENST00000639659 H3BNC9 293 aa17.37■□□□□ 0.37
SYNE2-228ENST00000639659 TGFB3P10600 412 aa17.37■□□□□ 0.37
SYNE2-228ENST00000639659 ALADP13716 330 aa17.37■□□□□ 0.37
SYNE2-228ENST00000639659 MKRN4PQ13434 485 aaPredicted RBP17.37■□□□□ 0.37
SYNE2-228ENST00000639659 PUS10Q3MIT2 529 aaKnown RBP17.37■□□□□ 0.37
SYNE2-228ENST00000639659 TOP1MTQ969P6 601 aa17.37■□□□□ 0.37
SYNE2-228ENST00000639659 MAP3K20Q9NYL2 800 aaKnown RBP17.37■□□□□ 0.37
SYNE2-228ENST00000639659 ZNF215Q9UL58 517 aaPredicted RBP17.37■□□□□ 0.37
SYNE2-228ENST00000639659 SUPT16HQ9Y5B9 1047 aaKnown RBP17.37■□□□□ 0.37
SYNE2-228ENST00000639659 LOC101059915A0A1B0GWI6 518 aaPredicted RBP17.36■□□□□ 0.37
SYNE2-228ENST00000639659 GNAT1P11488 350 aa17.36■□□□□ 0.37
SYNE2-228ENST00000639659 GHRHRQ02643 423 aa17.36■□□□□ 0.37
SYNE2-228ENST00000639659 TRDNQ13061 729 aa17.36■□□□□ 0.37
SYNE2-228ENST00000639659 SEC23AQ15436 765 aa17.36■□□□□ 0.37
SYNE2-228ENST00000639659 RPAINQ86UA6 219 aa17.36■□□□□ 0.37
SYNE2-228ENST00000639659 FIBCD1Q8N539 461 aa17.36■□□□□ 0.37
SYNE2-228ENST00000639659 NEK9Q8TD19 979 aa17.36■□□□□ 0.37
SYNE2-228ENST00000639659 PABPC5Q96DU9 382 aaKnown RBP17.36■□□□□ 0.37
SYNE2-228ENST00000639659 MTMR8Q96EF0 704 aa17.36■□□□□ 0.37
SYNE2-228ENST00000639659 RWDD1Q9H446 243 aaPredicted RBP17.36■□□□□ 0.37
SYNE2-228ENST00000639659 FAM50BQ9Y247 325 aa17.36■□□□□ 0.37
SYNE2-228ENST00000639659 MUC6Q6W4X9 2439 aa17.36■□□□□ 0.37
SYNE2-228ENST00000639659 RALGAPA2Q2PPJ7 1873 aa17.35■□□□□ 0.37
SYNE2-228ENST00000639659 ERICH2A1L162 156 aa17.35■□□□□ 0.37
SYNE2-228ENST00000639659 PALM3A6NDB9 673 aaPredicted RBP17.35■□□□□ 0.37
SYNE2-228ENST00000639659 IFIT3O14879 490 aaKnown RBP17.35■□□□□ 0.37
SYNE2-228ENST00000639659 DCXO43602 365 aa17.35■□□□□ 0.37
SYNE2-228ENST00000639659 GHRP10912 638 aa17.35■□□□□ 0.37
SYNE2-228ENST00000639659 TRAF1Q13077 416 aa17.35■□□□□ 0.37
SYNE2-228ENST00000639659 NEDD9Q14511 834 aa17.35■□□□□ 0.37
SYNE2-228ENST00000639659 GRM4Q14833 912 aa17.35■□□□□ 0.37
SYNE2-228ENST00000639659 SLC35G1Q2M3R5 365 aa17.35■□□□□ 0.37
SYNE2-228ENST00000639659 APBB2Q92870 758 aa17.35■□□□□ 0.37
SYNE2-228ENST00000639659 IL17RAQ96F46 866 aa17.35■□□□□ 0.37
SYNE2-228ENST00000639659 GPR20Q99678 358 aa17.35■□□□□ 0.37
SYNE2-228ENST00000639659 USP26Q9BXU7 913 aa17.35■□□□□ 0.37
SYNE2-228ENST00000639659 TELO2Q9Y4R8 837 aa17.35■□□□□ 0.37
SYNE2-228ENST00000639659 CAND2O75155 1236 aa17.34■□□□□ 0.37
SYNE2-228ENST00000639659 MRPS9P82933 396 aaKnown RBP17.34■□□□□ 0.37
SYNE2-228ENST00000639659 METTL7BQ6UX53 244 aa17.34■□□□□ 0.37
SYNE2-228ENST00000639659 SMC5Q8IY18 1101 aa17.34■□□□□ 0.37
SYNE2-228ENST00000639659 SAMD3Q8N6K7 520 aa17.34■□□□□ 0.37
SYNE2-228ENST00000639659 SMARCC2Q8TAQ2 1214 aa17.34■□□□□ 0.37
SYNE2-228ENST00000639659 LMBR1Q8WVP7 490 aa17.34■□□□□ 0.37
SYNE2-228ENST00000639659 IL25Q9H293 177 aa17.34■□□□□ 0.37
SYNE2-228ENST00000639659 IGFLR1Q9H665 355 aa17.34■□□□□ 0.37
SYNE2-228ENST00000639659 SENP2Q9HC62 589 aa17.34■□□□□ 0.37
SYNE2-228ENST00000639659 PNMA6FA0A0J9YX94 578 aa17.33■□□□□ 0.36
SYNE2-228ENST00000639659 FIBPO43427 364 aa17.33■□□□□ 0.36
SYNE2-228ENST00000639659 MARK3P27448 753 aa17.33■□□□□ 0.36
SYNE2-228ENST00000639659 HOXC8P31273 242 aa17.33■□□□□ 0.36
SYNE2-228ENST00000639659 ZP2Q05996 745 aa17.33■□□□□ 0.36
SYNE2-228ENST00000639659 SEMA3FQ13275 785 aa17.33■□□□□ 0.36
SYNE2-228ENST00000639659 WTAPQ15007 396 aa17.33■□□□□ 0.36
SYNE2-228ENST00000639659 RALYLQ86SE5 291 aaKnown RBP17.33■□□□□ 0.36
SYNE2-228ENST00000639659 OSBPL3Q9H4L5 887 aa17.33■□□□□ 0.36
SYNE2-228ENST00000639659 PKD2L1Q9P0L9 805 aa17.33■□□□□ 0.36
SYNE2-228ENST00000639659 MYO7AQ13402 2215 aa17.33■□□□□ 0.36
SYNE2-228ENST00000639659 KAT6AQ92794 2004 aa17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 92.7 ms