RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 PTPN22Q9Y2R2 807 aa4.4□□□□□ -1.7
SCN1A-214ENST00000637038 LOC285556D6RIA3 1793 aa4.4□□□□□ -1.71
SCN1A-214ENST00000637038 ABCB11O95342 1321 aa4.4□□□□□ -1.71
SCN1A-214ENST00000637038 A0A0U1RQJ8 604 aa4.4□□□□□ -1.71
SCN1A-214ENST00000637038 RNF40O75150 1001 aa4.4□□□□□ -1.71
SCN1A-214ENST00000637038 ERLIN2O94905 339 aa4.4□□□□□ -1.71
SCN1A-214ENST00000637038 SRGNP10124 158 aa4.4□□□□□ -1.71
SCN1A-214ENST00000637038 TNNC1P63316 161 aa4.4□□□□□ -1.71
SCN1A-214ENST00000637038 TROAPQ12815 778 aa4.4□□□□□ -1.71
SCN1A-214ENST00000637038 PTPN21Q16825 1174 aa4.4□□□□□ -1.71
SCN1A-214ENST00000637038 KRT79Q5XKE5 535 aa4.4□□□□□ -1.71
SCN1A-214ENST00000637038 ALS2CLQ60I27 953 aa4.4□□□□□ -1.71
SCN1A-214ENST00000637038 EMBQ6PCB8 327 aa4.4□□□□□ -1.71
SCN1A-214ENST00000637038 TRAPPC11Q7Z392 1133 aa4.4□□□□□ -1.71
SCN1A-214ENST00000637038 KRT26Q7Z3Y9 468 aa4.4□□□□□ -1.71
SCN1A-214ENST00000637038 IFT20Q8IY31 132 aa4.4□□□□□ -1.71
SCN1A-214ENST00000637038 EFCAB13Q8IY85 973 aa4.4□□□□□ -1.71
SCN1A-214ENST00000637038 ARFGAP2Q8N6H7 521 aa4.4□□□□□ -1.71
SCN1A-214ENST00000637038 PNMA1Q8ND90 353 aa4.4□□□□□ -1.71
SCN1A-214ENST00000637038 ATRIPQ8WXE1 791 aa4.4□□□□□ -1.71
SCN1A-214ENST00000637038 CAPZA3Q96KX2 299 aa4.4□□□□□ -1.71
SCN1A-214ENST00000637038 CNOT6LQ96LI5 555 aaKnown RBP4.4□□□□□ -1.71
SCN1A-214ENST00000637038 GLT8D2Q9H1C3 349 aa4.4□□□□□ -1.71
SCN1A-214ENST00000637038 FAM204AQ9H8W3 233 aa4.4□□□□□ -1.71
SCN1A-214ENST00000637038 ANKZF1Q9H8Y5 726 aa4.4□□□□□ -1.71
SCN1A-214ENST00000637038 INCENPQ9NQS7 918 aa4.4□□□□□ -1.71
SCN1A-214ENST00000637038 XDHP47989 1333 aa4.4□□□□□ -1.71
SCN1A-214ENST00000637038 BBOX1O75936 387 aa4.4□□□□□ -1.71
SCN1A-214ENST00000637038 SASH3O75995 380 aa4.4□□□□□ -1.71
SCN1A-214ENST00000637038 CD44P16070 742 aaKnown RBP4.4□□□□□ -1.71
SCN1A-214ENST00000637038 PRCPP42785 496 aa4.4□□□□□ -1.71
SCN1A-214ENST00000637038 EPHB4P54760 987 aa4.4□□□□□ -1.71
SCN1A-214ENST00000637038 VSNL1P62760 191 aa4.4□□□□□ -1.71
SCN1A-214ENST00000637038 IRX5P78411 483 aaPredicted RBP4.4□□□□□ -1.71
SCN1A-214ENST00000637038 ITIH3Q06033 890 aa4.4□□□□□ -1.71
SCN1A-214ENST00000637038 PAK2Q13177 524 aa4.4□□□□□ -1.71
SCN1A-214ENST00000637038 PSMD2Q13200 908 aa4.4□□□□□ -1.71
SCN1A-214ENST00000637038 GRM4Q14833 912 aa4.4□□□□□ -1.71
SCN1A-214ENST00000637038 RAB30Q15771 203 aa4.4□□□□□ -1.71
SCN1A-214ENST00000637038 CFAP221Q4G0U5 840 aa4.4□□□□□ -1.71
SCN1A-214ENST00000637038 CCDC40Q4G0X9 1142 aa4.4□□□□□ -1.71
SCN1A-214ENST00000637038 TDRD12Q587J7 1177 aaKnown RBP4.4□□□□□ -1.71
SCN1A-214ENST00000637038 PAPD7Q5XG87 772 aaKnown RBP4.4□□□□□ -1.71
SCN1A-214ENST00000637038 USP49Q70CQ1 688 aa4.4□□□□□ -1.71
SCN1A-214ENST00000637038 NBPF5PQ86XG9 351 aaPredicted RBP4.4□□□□□ -1.71
SCN1A-214ENST00000637038 FMNL3Q8IVF7 1028 aa4.4□□□□□ -1.71
SCN1A-214ENST00000637038 C10orf67Q8IYJ2 551 aa4.4□□□□□ -1.71
SCN1A-214ENST00000637038 STAMQ92783 540 aa4.4□□□□□ -1.71
SCN1A-214ENST00000637038 ZKSCAN4Q969J2 545 aaPredicted RBP4.4□□□□□ -1.71
SCN1A-214ENST00000637038 MTRQ99707 1265 aa4.4□□□□□ -1.71
SCN1A-214ENST00000637038 UBE2OQ9C0C9 1292 aaKnown RBP4.4□□□□□ -1.71
SCN1A-214ENST00000637038 GEMIN8Q9NWZ8 242 aaKnown RBP4.4□□□□□ -1.71
SCN1A-214ENST00000637038 STK24Q9Y6E0 443 aa4.4□□□□□ -1.71
SCN1A-214ENST00000637038 TTC26A0AVF1 554 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 M0R2N6 131 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 FZD9O00144 591 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 MYO1CO00159 1063 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 LDHBP07195 334 aaKnown RBP4.39□□□□□ -1.71
SCN1A-214ENST00000637038 MAGEA1P43355 309 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 MAGEA9P43362 315 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 CRKLP46109 303 aaKnown RBP4.39□□□□□ -1.71
SCN1A-214ENST00000637038 AARSP49588 968 aaKnown RBP eCLIP4.39□□□□□ -1.71
SCN1A-214ENST00000637038 ERVK-24P63145 666 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 TFAP4Q01664 338 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 LRRC63Q05C16 580 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 NNTQ13423 1086 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 E2F4Q16254 413 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 MAN2A1Q16706 1144 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 EARS2Q5JPH6 523 aaKnown RBP4.39□□□□□ -1.71
SCN1A-214ENST00000637038 C8orf74Q6P047 294 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 ZNF804AQ7Z570 1209 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 NEK8Q86SG6 692 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 CCDC24Q8N4L8 307 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 RAET1EQ8TD07 263 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 COG1Q8WTW3 980 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 FAM212AQ96EL1 285 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 SLC10A4Q96EP9 437 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 TRERF1Q96PN7 1200 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 CRAMP1Q96RY5 1269 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 MMRN2Q9H8L6 949 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 NHEJ1Q9H9Q4 299 aaPredicted RBP4.39□□□□□ -1.71
SCN1A-214ENST00000637038 RIC8AQ9NPQ8 531 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 COLQQ9Y215 455 aaPredicted RBP4.39□□□□□ -1.71
SCN1A-214ENST00000637038 PCNTO95613 3336 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 ZNF804BA4D1E1 1349 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 PVALEFA0A1B0GWK0 134 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 hCG_1642624A0A1W2PR95 340 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 MACROD2A1Z1Q3 448 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 B4DLN1 442 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 TULP2O00295 520 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 SLC26A4O43511 780 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 EDIL3O43854 480 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 PHACTR2O75167 634 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 DDNO94850 711 aaPredicted RBP4.39□□□□□ -1.71
SCN1A-214ENST00000637038 KRT18P05783 430 aaKnown RBP4.39□□□□□ -1.71
SCN1A-214ENST00000637038 PRLRP16471 622 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 GYG1P46976 350 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 MAP1SQ66K74 1059 aaPredicted RBP4.39□□□□□ -1.71
SCN1A-214ENST00000637038 SRLQ86TD4 932 aa4.39□□□□□ -1.71
SCN1A-214ENST00000637038 GIMAP8Q8ND71 665 aaPredicted RBP4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms