RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 SP4Q02446 784 aa18.66■□□□□ 0.58
CLN3-246ENST00000636228 SERINC5Q86VE9 423 aa18.66■□□□□ 0.58
CLN3-246ENST00000636228 CMTR1Q8N1G2 835 aaKnown RBP18.66■□□□□ 0.58
CLN3-246ENST00000636228 INPP4AQ96PE3 977 aaPredicted RBP18.66■□□□□ 0.58
CLN3-246ENST00000636228 RNPEPQ9H4A4 650 aa18.66■□□□□ 0.58
CLN3-246ENST00000636228 LY9Q9HBG7 655 aa18.66■□□□□ 0.58
CLN3-246ENST00000636228 RAPGEFL1Q9UHV5 662 aa18.66■□□□□ 0.58
CLN3-246ENST00000636228 XIRP2A4UGR9 3374 aa18.66■□□□□ 0.58
CLN3-246ENST00000636228 KIAA1217Q5T5P2 1943 aa18.65■□□□□ 0.58
CLN3-246ENST00000636228 CTSHP09668 335 aa18.65■□□□□ 0.58
CLN3-246ENST00000636228 RXRAP19793 462 aa18.65■□□□□ 0.58
CLN3-246ENST00000636228 UTP14CQ5TAP6 766 aaKnown RBP18.65■□□□□ 0.58
CLN3-246ENST00000636228 TRIM50Q86XT4 487 aa18.65■□□□□ 0.58
CLN3-246ENST00000636228 RAB11FIP4Q86YS3 637 aa18.65■□□□□ 0.58
CLN3-246ENST00000636228 ZNF654Q8IZM8 581 aa18.65■□□□□ 0.58
CLN3-246ENST00000636228 CTCFLQ8NI51 663 aaPredicted RBP18.65■□□□□ 0.58
CLN3-246ENST00000636228 GPR20Q99678 358 aa18.65■□□□□ 0.58
CLN3-246ENST00000636228 SUGCTQ9HAC7 445 aa18.65■□□□□ 0.58
CLN3-246ENST00000636228 SETD4Q9NVD3 440 aa18.65■□□□□ 0.58
CLN3-246ENST00000636228 REV3LO60673 3130 aa18.64■□□□□ 0.57
CLN3-246ENST00000636228 LINC01553A4QN01 128 aa18.64■□□□□ 0.57
CLN3-246ENST00000636228 PRC1O43663 620 aa18.64■□□□□ 0.57
CLN3-246ENST00000636228 PLEKHA8P1O95397 391 aa18.64■□□□□ 0.57
CLN3-246ENST00000636228 ICAM3P32942 547 aa18.64■□□□□ 0.57
CLN3-246ENST00000636228 AAK1Q2M2I8 961 aa18.64■□□□□ 0.57
CLN3-246ENST00000636228 GNPTABQ3T906 1256 aa18.64■□□□□ 0.57
CLN3-246ENST00000636228 SRBD1Q8N5C6 995 aaKnown RBP18.64■□□□□ 0.57
CLN3-246ENST00000636228 SMARCC2Q8TAQ2 1214 aa18.64■□□□□ 0.57
CLN3-246ENST00000636228 RRP36Q96EU6 259 aaKnown RBP18.64■□□□□ 0.57
CLN3-246ENST00000636228 FRMPD4Q14CM0 1322 aa18.64■□□□□ 0.57
CLN3-246ENST00000636228 TRIP12Q14669 1992 aaPredicted RBP18.63■□□□□ 0.57
CLN3-246ENST00000636228 hCG_1642624A0A1W2PR95 340 aa18.63■□□□□ 0.57
CLN3-246ENST00000636228 MEIS2O14770 477 aa18.63■□□□□ 0.57
CLN3-246ENST00000636228 COL9A1P20849 921 aa18.63■□□□□ 0.57
CLN3-246ENST00000636228 NEDD9Q14511 834 aa18.63■□□□□ 0.57
CLN3-246ENST00000636228 METTL7BQ6UX53 244 aa18.63■□□□□ 0.57
CLN3-246ENST00000636228 NFXL1Q6ZNB6 911 aa18.63■□□□□ 0.57
CLN3-246ENST00000636228 MYOCDQ8IZQ8 938 aa18.63■□□□□ 0.57
CLN3-246ENST00000636228 TGS1Q96RS0 853 aaKnown RBP18.63■□□□□ 0.57
CLN3-246ENST00000636228 SPZ1Q9BXG8 430 aa18.63■□□□□ 0.57
CLN3-246ENST00000636228 USP26Q9BXU7 913 aa18.63■□□□□ 0.57
CLN3-246ENST00000636228 FIBPO43427 364 aa18.62■□□□□ 0.57
CLN3-246ENST00000636228 EFCAB14O75071 495 aa18.62■□□□□ 0.57
CLN3-246ENST00000636228 HOXC8P31273 242 aa18.62■□□□□ 0.57
CLN3-246ENST00000636228 ERVK-21P61565 698 aa18.62■□□□□ 0.57
CLN3-246ENST00000636228 CASC1Q6TDU7 716 aa18.62■□□□□ 0.57
CLN3-246ENST00000636228 CCDC82Q8N4S0 544 aa18.62■□□□□ 0.57
CLN3-246ENST00000636228 CUL5Q93034 780 aa18.62■□□□□ 0.57
CLN3-246ENST00000636228 HLA-CQ95604 372 aa18.62■□□□□ 0.57
CLN3-246ENST00000636228 C17orf80Q9BSJ5 609 aa18.62■□□□□ 0.57
CLN3-246ENST00000636228 LRRC2Q9BYS8 371 aa18.62■□□□□ 0.57
CLN3-246ENST00000636228 COG5Q9UP83 839 aa18.62■□□□□ 0.57
CLN3-246ENST00000636228 MYH6P13533 1939 aa18.62■□□□□ 0.57
CLN3-246ENST00000636228 PRRC2BQ5JSZ5 2229 aaKnown RBP18.61■□□□□ 0.57
CLN3-246ENST00000636228 EMSYQ7Z589 1322 aa18.61■□□□□ 0.57
CLN3-246ENST00000636228 CCDC69A6NI79 296 aa18.61■□□□□ 0.57
CLN3-246ENST00000636228 SH2B2O14492 632 aaPredicted RBP18.61■□□□□ 0.57
CLN3-246ENST00000636228 STAM2O75886 525 aa18.61■□□□□ 0.57
CLN3-246ENST00000636228 DDAH1O94760 285 aa18.61■□□□□ 0.57
CLN3-246ENST00000636228 UPP2O95045 317 aa18.61■□□□□ 0.57
CLN3-246ENST00000636228 AMHP03971 560 aa18.61■□□□□ 0.57
CLN3-246ENST00000636228 KIF5BP33176 963 aa18.61■□□□□ 0.57
CLN3-246ENST00000636228 ARHGAP4P98171 946 aa18.61■□□□□ 0.57
CLN3-246ENST00000636228 MKRN4PQ13434 485 aaPredicted RBP18.61■□□□□ 0.57
CLN3-246ENST00000636228 PLEKHG4Q58EX7 1191 aa18.61■□□□□ 0.57
CLN3-246ENST00000636228 PCNX4Q63HM2 1172 aa18.61■□□□□ 0.57
CLN3-246ENST00000636228 MAP3K14Q99558 947 aa18.61■□□□□ 0.57
CLN3-246ENST00000636228 LSG1Q9H089 658 aaKnown RBP18.61■□□□□ 0.57
CLN3-246ENST00000636228 SEC63Q9UGP8 760 aaKnown RBP18.61■□□□□ 0.57
CLN3-246ENST00000636228 PTPRSQ13332 1948 aa18.61■□□□□ 0.57
CLN3-246ENST00000636228 SLC27A2O14975 620 aa18.6■□□□□ 0.57
CLN3-246ENST00000636228 ATP9AO75110 1047 aa18.6■□□□□ 0.57
CLN3-246ENST00000636228 MCM5P33992 734 aa18.6■□□□□ 0.57
CLN3-246ENST00000636228 UBE2SQ16763 222 aa18.6■□□□□ 0.57
CLN3-246ENST00000636228 NLRX1Q86UT6 975 aa18.6■□□□□ 0.57
CLN3-246ENST00000636228 PKD2L1Q9P0L9 805 aa18.6■□□□□ 0.57
CLN3-246ENST00000636228 INSL6Q9Y581 213 aa18.6■□□□□ 0.57
CLN3-246ENST00000636228 BAZ2BQ9UIF8 2168 aaKnown RBP18.59■□□□□ 0.57
CLN3-246ENST00000636228 PIK3CDO00329 1044 aa18.59■□□□□ 0.57
CLN3-246ENST00000636228 SEPT8Q92599 483 aa18.59■□□□□ 0.57
CLN3-246ENST00000636228 LZTS2Q9BRK4 669 aa18.59■□□□□ 0.57
CLN3-246ENST00000636228 PSTPIP2Q9H939 334 aa18.59■□□□□ 0.57
CLN3-246ENST00000636228 LMCD1Q9NZU5 365 aa18.59■□□□□ 0.57
CLN3-246ENST00000636228 TRANK1O15050 2925 aa18.59■□□□□ 0.57
CLN3-246ENST00000636228 MYH7BA7E2Y1 1941 aa18.59■□□□□ 0.57
CLN3-246ENST00000636228 LOC101059915A0A1B0GWI6 518 aaPredicted RBP18.58■□□□□ 0.56
CLN3-246ENST00000636228 GNAT1P11488 350 aa18.58■□□□□ 0.56
CLN3-246ENST00000636228 ITGB5P18084 799 aa18.58■□□□□ 0.56
CLN3-246ENST00000636228 SMARCA1P28370 1054 aa18.58■□□□□ 0.56
CLN3-246ENST00000636228 TCF7P36402 384 aaPredicted RBP18.58■□□□□ 0.56
CLN3-246ENST00000636228 ADAM17P78536 824 aa18.58■□□□□ 0.56
CLN3-246ENST00000636228 HTRA4P83105 476 aaPredicted RBP18.58■□□□□ 0.56
CLN3-246ENST00000636228 CREB3L3Q68CJ9 461 aa18.58■□□□□ 0.56
CLN3-246ENST00000636228 RUFY4Q6ZNE9 571 aa18.58■□□□□ 0.56
CLN3-246ENST00000636228 SKAP1Q86WV1 359 aa18.58■□□□□ 0.56
CLN3-246ENST00000636228 FBXO22Q8NEZ5 403 aa18.58■□□□□ 0.56
CLN3-246ENST00000636228 LMBR1Q8WVP7 490 aa18.58■□□□□ 0.56
CLN3-246ENST00000636228 SENP7Q9BQF6 1050 aa18.58■□□□□ 0.56
CLN3-246ENST00000636228 ZNF215Q9UL58 517 aaPredicted RBP18.58■□□□□ 0.56
CLN3-246ENST00000636228 MARK3P27448 753 aa18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms