RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 OTOP1Q7RTM1 612 aa23.2■■□□□ 1.3
CLN3-245ENST00000636172 MRPS27Q92552 414 aaKnown RBP23.2■■□□□ 1.3
CLN3-245ENST00000636172 EPSTI1Q96J88 318 aa23.2■■□□□ 1.3
CLN3-245ENST00000636172 AK8Q96MA6 479 aa23.2■■□□□ 1.3
CLN3-245ENST00000636172 ABHD16BQ9H3Z7 469 aa23.2■■□□□ 1.3
CLN3-245ENST00000636172 GOLPH3LQ9H4A5 285 aa23.2■■□□□ 1.3
CLN3-245ENST00000636172 TBC1D22BQ9NU19 505 aa23.2■■□□□ 1.3
CLN3-245ENST00000636172 ARIH2O95376 493 aa23.19■■□□□ 1.3
CLN3-245ENST00000636172 UBA1P22314 1058 aaKnown RBP23.19■■□□□ 1.3
CLN3-245ENST00000636172 PPP2R5CQ13362 524 aa23.19■■□□□ 1.3
CLN3-245ENST00000636172 IRF5Q13568 498 aa23.19■■□□□ 1.3
CLN3-245ENST00000636172 B3GNT9Q6UX72 402 aa23.19■■□□□ 1.3
CLN3-245ENST00000636172 FSIP1Q8NA03 581 aa23.19■■□□□ 1.3
CLN3-245ENST00000636172 TRIB2Q92519 343 aa23.19■■□□□ 1.3
CLN3-245ENST00000636172 SYMPKQ92797 1274 aaKnown RBP23.19■■□□□ 1.3
CLN3-245ENST00000636172 SENP7Q9BQF6 1050 aa23.19■■□□□ 1.3
CLN3-245ENST00000636172 TEKT3Q9BXF9 490 aa23.19■■□□□ 1.3
CLN3-245ENST00000636172 RAB34Q9BZG1 259 aa23.19■■□□□ 1.3
CLN3-245ENST00000636172 LRWD1Q9UFC0 647 aa23.19■■□□□ 1.3
CLN3-245ENST00000636172 NFASCO94856 1347 aa23.19■■□□□ 1.3
CLN3-245ENST00000636172 RBM47A0AV96 593 aaKnown RBP23.18■■□□□ 1.3
CLN3-245ENST00000636172 DDX39AO00148 427 aaKnown RBP23.18■■□□□ 1.3
CLN3-245ENST00000636172 TGFB3P10600 412 aa23.18■■□□□ 1.3
CLN3-245ENST00000636172 PTMSP20962 102 aa23.18■■□□□ 1.3
CLN3-245ENST00000636172 CDC25AP30304 524 aa23.18■■□□□ 1.3
CLN3-245ENST00000636172 ACVR2BQ13705 512 aa23.18■■□□□ 1.3
CLN3-245ENST00000636172 ARHGEF6Q15052 776 aa23.18■■□□□ 1.3
CLN3-245ENST00000636172 CCDC62Q6P9F0 684 aa23.18■■□□□ 1.3
CLN3-245ENST00000636172 KCNV1Q6PIU1 500 aa23.18■■□□□ 1.3
CLN3-245ENST00000636172 SCFD2Q8WU76 684 aa23.18■■□□□ 1.3
CLN3-245ENST00000636172 UNC45AQ9H3U1 944 aa23.18■■□□□ 1.3
CLN3-245ENST00000636172 BCAS3Q9H6U6 928 aa23.18■■□□□ 1.3
CLN3-245ENST00000636172 DDX41Q9UJV9 622 aaKnown RBP23.18■■□□□ 1.3
CLN3-245ENST00000636172 FAM237AA0A1B0GTK4 181 aa23.18■■□□□ 1.3
CLN3-245ENST00000636172 A0A1B0GVL5 298 aa23.18■■□□□ 1.3
CLN3-245ENST00000636172 LY6KQ17RY6 165 aa23.18■■□□□ 1.3
CLN3-245ENST00000636172 GPT2Q8TD30 523 aa23.18■■□□□ 1.3
CLN3-245ENST00000636172 SDF4Q9BRK5 362 aa23.18■■□□□ 1.3
CLN3-245ENST00000636172 ZHX1Q9UKY1 873 aaPredicted RBP23.18■■□□□ 1.3
CLN3-245ENST00000636172 EML1O00423 815 aa23.17■■□□□ 1.3
CLN3-245ENST00000636172 CHMP2AO43633 222 aa23.17■■□□□ 1.3
CLN3-245ENST00000636172 PFKFB1P16118 471 aa23.17■■□□□ 1.3
CLN3-245ENST00000636172 LIG1P18858 919 aa23.17■■□□□ 1.3
CLN3-245ENST00000636172 TTLL4Q14679 1199 aa23.17■■□□□ 1.3
CLN3-245ENST00000636172 PRAMEF19Q5SWL8 479 aa23.17■■□□□ 1.3
CLN3-245ENST00000636172 NCAPH2Q6IBW4 605 aa23.17■■□□□ 1.3
CLN3-245ENST00000636172 HPSEQ9Y251 543 aa23.17■■□□□ 1.3
CLN3-245ENST00000636172 HTTP42858 3142 aa23.16■■□□□ 1.3
CLN3-245ENST00000636172 CCNE2O96020 404 aa23.16■■□□□ 1.3
CLN3-245ENST00000636172 TXNP10599 105 aaKnown RBP23.16■■□□□ 1.3
CLN3-245ENST00000636172 NDUFA8P51970 172 aa23.16■■□□□ 1.3
CLN3-245ENST00000636172 TMEM63BQ5T3F8 832 aa23.16■■□□□ 1.3
CLN3-245ENST00000636172 TRMT44Q8IYL2 757 aaKnown RBP23.16■■□□□ 1.3
CLN3-245ENST00000636172 MMTAG2Q9BU76 263 aaKnown RBP23.16■■□□□ 1.3
CLN3-245ENST00000636172 JPH1Q9HDC5 661 aaPredicted RBP23.16■■□□□ 1.3
CLN3-245ENST00000636172 FAM13BQ9NYF5 915 aa23.16■■□□□ 1.3
CLN3-245ENST00000636172 SORBS3O60504 671 aa23.15■■□□□ 1.3
CLN3-245ENST00000636172 ZNF865P0CJ78 1059 aaPredicted RBP23.15■■□□□ 1.3
CLN3-245ENST00000636172 ADCYAP1R1P41586 468 aa23.15■■□□□ 1.3
CLN3-245ENST00000636172 NEDD9Q14511 834 aa23.15■■□□□ 1.3
CLN3-245ENST00000636172 MFSD14CQ5VZR4 134 aa23.15■■□□□ 1.3
CLN3-245ENST00000636172 CYFIP1Q7L576 1253 aa23.15■■□□□ 1.3
CLN3-245ENST00000636172 GIMAP8Q8ND71 665 aaPredicted RBP23.15■■□□□ 1.3
CLN3-245ENST00000636172 CCSER1Q9C0I3 900 aa23.15■■□□□ 1.3
CLN3-245ENST00000636172 C11orf97A0A1B0GVM6 126 aaPredicted RBP23.14■■□□□ 1.3
CLN3-245ENST00000636172 GGPS1O95749 300 aa23.14■■□□□ 1.3
CLN3-245ENST00000636172 ELNP15502 786 aa23.14■■□□□ 1.3
CLN3-245ENST00000636172 UBA7P41226 1012 aa23.14■■□□□ 1.3
CLN3-245ENST00000636172 KRT76Q01546 638 aa23.14■■□□□ 1.3
CLN3-245ENST00000636172 CCDC144BQ3MJ40 725 aa23.14■■□□□ 1.3
CLN3-245ENST00000636172 CCDC73Q6ZRK6 1079 aa23.14■■□□□ 1.3
CLN3-245ENST00000636172 CABP7Q86V35 215 aa23.14■■□□□ 1.3
CLN3-245ENST00000636172 RAET1EQ8TD07 263 aa23.14■■□□□ 1.3
CLN3-245ENST00000636172 SLC9A2Q9UBY0 812 aa23.14■■□□□ 1.3
CLN3-245ENST00000636172 TELO2Q9Y4R8 837 aa23.14■■□□□ 1.3
CLN3-245ENST00000636172 TRIM17Q9Y577 477 aa23.14■■□□□ 1.3
CLN3-245ENST00000636172 A0A087X0B3 334 aa23.13■■□□□ 1.29
CLN3-245ENST00000636172 ADCY3O60266 1144 aa23.13■■□□□ 1.29
CLN3-245ENST00000636172 FARP2O94887 1054 aaPredicted RBP23.13■■□□□ 1.29
CLN3-245ENST00000636172 MBD3O95983 291 aa23.13■■□□□ 1.29
CLN3-245ENST00000636172 PRMT2P55345 433 aa23.13■■□□□ 1.29
CLN3-245ENST00000636172 FAM160A1Q05DH4 1040 aa23.13■■□□□ 1.29
CLN3-245ENST00000636172 CELF3Q5SZQ8 465 aaKnown RBP23.13■■□□□ 1.29
CLN3-245ENST00000636172 KRT79Q5XKE5 535 aa23.13■■□□□ 1.29
CLN3-245ENST00000636172 ZNF746Q6NUN9 644 aaPredicted RBP23.13■■□□□ 1.29
CLN3-245ENST00000636172 METTL7BQ6UX53 244 aa23.13■■□□□ 1.29
CLN3-245ENST00000636172 TNS4Q8IZW8 715 aa23.13■■□□□ 1.29
CLN3-245ENST00000636172 FMR1NBQ8N0W7 255 aaPredicted RBP23.13■■□□□ 1.29
CLN3-245ENST00000636172 ENGASEQ8NFI3 743 aa23.13■■□□□ 1.29
CLN3-245ENST00000636172 SNX29Q8TEQ0 813 aa23.13■■□□□ 1.29
CLN3-245ENST00000636172 COPS5Q92905 334 aa23.13■■□□□ 1.29
CLN3-245ENST00000636172 NRBP1Q9UHY1 535 aa23.13■■□□□ 1.29
CLN3-245ENST00000636172 KCNH3Q9ULD8 1083 aa23.13■■□□□ 1.29
CLN3-245ENST00000636172 HSPA8P11142 646 aaKnown RBP23.13■■□□□ 1.29
CLN3-245ENST00000636172 PTGS1P23219 599 aa23.13■■□□□ 1.29
CLN3-245ENST00000636172 TXLNAP40222 546 aa23.13■■□□□ 1.29
CLN3-245ENST00000636172 TRIM32Q13049 653 aa23.13■■□□□ 1.29
CLN3-245ENST00000636172 SNW1Q13573 536 aaKnown RBP23.13■■□□□ 1.29
CLN3-245ENST00000636172 KARSQ15046 597 aaKnown RBP23.13■■□□□ 1.29
CLN3-245ENST00000636172 IQSEC1Q6DN90 963 aa23.13■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms