RNA–Protein interactions for RNA: ENST00000621245.4

CPNE3-210, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 581 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-210ENST00000621245 DEFB103AP81534 67 aa13.26□□□□□ -0.29
CPNE3-210ENST00000621245 DGKDQ16760 1214 aa13.26□□□□□ -0.29
CPNE3-210ENST00000621245 PPP1R15BQ5SWA1 713 aa13.26□□□□□ -0.29
CPNE3-210ENST00000621245 VSIG10LQ86VR7 867 aa13.26□□□□□ -0.29
CPNE3-210ENST00000621245 DHX37Q8IY37 1157 aaKnown RBP13.26□□□□□ -0.29
CPNE3-210ENST00000621245 PPTC7Q8NI37 304 aa13.26□□□□□ -0.29
CPNE3-210ENST00000621245 RUFY2Q8WXA3 655 aa13.26□□□□□ -0.29
CPNE3-210ENST00000621245 GAS2L1Q99501 681 aaPredicted RBP13.26□□□□□ -0.29
CPNE3-210ENST00000621245 LRRC2Q9BYS8 371 aa13.26□□□□□ -0.29
CPNE3-210ENST00000621245 MAF1Q9H063 256 aa13.26□□□□□ -0.29
CPNE3-210ENST00000621245 MTIF3Q9H2K0 278 aaKnown RBP13.26□□□□□ -0.29
CPNE3-210ENST00000621245 SLC28A3Q9HAS3 691 aa13.26□□□□□ -0.29
CPNE3-210ENST00000621245 NOD1Q9Y239 953 aa13.26□□□□□ -0.29
CPNE3-210ENST00000621245 PCDHA11Q9Y5I1 949 aa13.26□□□□□ -0.29
CPNE3-210ENST00000621245 PNMA6FA0A0J9YX94 578 aa13.25□□□□□ -0.29
CPNE3-210ENST00000621245 hCG_1642624A0A1W2PR95 340 aa13.25□□□□□ -0.29
CPNE3-210ENST00000621245 C19orf67A6NJJ6 358 aa13.25□□□□□ -0.29
CPNE3-210ENST00000621245 GCOM1H8Y6P7 765 aaPredicted RBP13.25□□□□□ -0.29
CPNE3-210ENST00000621245 PFKMP08237 780 aa13.25□□□□□ -0.29
CPNE3-210ENST00000621245 POLR2MP0CAP2 368 aa13.25□□□□□ -0.29
CPNE3-210ENST00000621245 CKBP12277 381 aa13.25□□□□□ -0.29
CPNE3-210ENST00000621245 CASTP20810 708 aaKnown RBP13.25□□□□□ -0.29
CPNE3-210ENST00000621245 KIAA0753Q2KHM9 967 aa13.25□□□□□ -0.29
CPNE3-210ENST00000621245 CELF3Q5SZQ8 465 aaKnown RBP13.25□□□□□ -0.29
CPNE3-210ENST00000621245 LRRC8DQ7L1W4 858 aa13.25□□□□□ -0.29
CPNE3-210ENST00000621245 ZNF654Q8IZM8 581 aa13.25□□□□□ -0.29
CPNE3-210ENST00000621245 MICALL1Q8N3F8 863 aa13.25□□□□□ -0.29
CPNE3-210ENST00000621245 FTOQ9C0B1 505 aaKnown RBP eCLIP13.25□□□□□ -0.29
CPNE3-210ENST00000621245 SH2B2O14492 632 aaPredicted RBP13.24□□□□□ -0.29
CPNE3-210ENST00000621245 SLC27A2O14975 620 aa13.24□□□□□ -0.29
CPNE3-210ENST00000621245 PRC1O43663 620 aa13.24□□□□□ -0.29
CPNE3-210ENST00000621245 SELPP16109 830 aa13.24□□□□□ -0.29
CPNE3-210ENST00000621245 CCND2P30279 289 aa13.24□□□□□ -0.29
CPNE3-210ENST00000621245 RFC2P35250 354 aa13.24□□□□□ -0.29
CPNE3-210ENST00000621245 WDR5P61964 334 aaKnown RBP13.24□□□□□ -0.29
CPNE3-210ENST00000621245 RBL2Q08999 1139 aa13.24□□□□□ -0.29
CPNE3-210ENST00000621245 BFSP2Q13515 415 aa13.24□□□□□ -0.29
CPNE3-210ENST00000621245 LAMC2Q13753 1193 aa13.24□□□□□ -0.29
CPNE3-210ENST00000621245 USP17L6PQ6QN14 398 aa13.24□□□□□ -0.29
CPNE3-210ENST00000621245 CATIPQ7Z7H3 387 aa13.24□□□□□ -0.29
CPNE3-210ENST00000621245 TRIM50Q86XT4 487 aa13.24□□□□□ -0.29
CPNE3-210ENST00000621245 HERC6Q8IVU3 1022 aa13.24□□□□□ -0.29
CPNE3-210ENST00000621245 SRBD1Q8N5C6 995 aaKnown RBP13.24□□□□□ -0.29
CPNE3-210ENST00000621245 RETREG2Q8NC44 543 aa13.24□□□□□ -0.29
CPNE3-210ENST00000621245 AFAP1L1Q8TED9 768 aa13.24□□□□□ -0.29
CPNE3-210ENST00000621245 SPATA33Q96N06 139 aa13.24□□□□□ -0.29
CPNE3-210ENST00000621245 ESYT1Q9BSJ8 1104 aa13.24□□□□□ -0.29
CPNE3-210ENST00000621245 C16orf70Q9BSU1 422 aa13.24□□□□□ -0.29
CPNE3-210ENST00000621245 ERICH2A1L162 156 aa13.23□□□□□ -0.29
CPNE3-210ENST00000621245 TAP1Q03518 808 aa13.23□□□□□ -0.29
CPNE3-210ENST00000621245 ZNF618Q5T7W0 954 aa13.23□□□□□ -0.29
CPNE3-210ENST00000621245 C7orf31Q8N865 590 aa13.23□□□□□ -0.29
CPNE3-210ENST00000621245 CAGE1Q8TC20 777 aa13.23□□□□□ -0.29
CPNE3-210ENST00000621245 RTEL1Q9NZ71 1219 aa13.23□□□□□ -0.29
CPNE3-210ENST00000621245 WDR81Q562E7 1941 aa13.22□□□□□ -0.29
CPNE3-210ENST00000621245 MEIS2O14770 477 aa13.22□□□□□ -0.29
CPNE3-210ENST00000621245 DDAH1O94760 285 aa13.22□□□□□ -0.29
CPNE3-210ENST00000621245 CXCL10P02778 98 aa13.22□□□□□ -0.29
CPNE3-210ENST00000621245 LGALS2P05162 132 aa13.22□□□□□ -0.29
CPNE3-210ENST00000621245 ACTN1P12814 892 aa13.22□□□□□ -0.29
CPNE3-210ENST00000621245 UBE2SQ16763 222 aa13.22□□□□□ -0.29
CPNE3-210ENST00000621245 CREB3L3Q68CJ9 461 aa13.22□□□□□ -0.29
CPNE3-210ENST00000621245 ARNTL2Q8WYA1 636 aa13.22□□□□□ -0.29
CPNE3-210ENST00000621245 INPP4AQ96PE3 977 aaPredicted RBP13.22□□□□□ -0.29
CPNE3-210ENST00000621245 SLC9A7Q96T83 725 aa13.22□□□□□ -0.29
CPNE3-210ENST00000621245 SPZ1Q9BXG8 430 aa13.22□□□□□ -0.29
CPNE3-210ENST00000621245 BMP2KQ9NSY1 1161 aaPredicted RBP13.22□□□□□ -0.29
CPNE3-210ENST00000621245 MAP3K20Q9NYL2 800 aaKnown RBP13.22□□□□□ -0.29
CPNE3-210ENST00000621245 KIAA1671Q9BY89 1806 aa13.22□□□□□ -0.29
CPNE3-210ENST00000621245 TRIOO75962 3097 aa13.21□□□□□ -0.29
CPNE3-210ENST00000621245 HOXC8P31273 242 aa13.21□□□□□ -0.29
CPNE3-210ENST00000621245 SP4Q02446 784 aa13.21□□□□□ -0.29
CPNE3-210ENST00000621245 TFF2Q03403 129 aa13.21□□□□□ -0.29
CPNE3-210ENST00000621245 PTK7Q13308 1070 aa13.21□□□□□ -0.29
CPNE3-210ENST00000621245 SART3Q15020 963 aaKnown RBP13.21□□□□□ -0.29
CPNE3-210ENST00000621245 TJAP1Q5JTD0 557 aa13.21□□□□□ -0.29
CPNE3-210ENST00000621245 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.21□□□□□ -0.29
CPNE3-210ENST00000621245 CYFIP1Q7L576 1253 aa13.21□□□□□ -0.29
CPNE3-210ENST00000621245 CCDC155Q8N6L0 562 aa13.21□□□□□ -0.29
CPNE3-210ENST00000621245 TCEANC2Q96MN5 208 aa13.21□□□□□ -0.29
CPNE3-210ENST00000621245 KATNAL1Q9BW62 490 aa13.21□□□□□ -0.29
CPNE3-210ENST00000621245 THEGQ9P2T0 379 aa13.21□□□□□ -0.29
CPNE3-210ENST00000621245 MTCH2Q9Y6C9 303 aa13.21□□□□□ -0.29
CPNE3-210ENST00000621245 SPATA31C2B4DYI2 1134 aa13.2□□□□□ -0.3
CPNE3-210ENST00000621245 TREHO43280 583 aa13.2□□□□□ -0.3
CPNE3-210ENST00000621245 LPXNO60711 386 aa13.2□□□□□ -0.3
CPNE3-210ENST00000621245 BAIAP3O94812 1187 aa13.2□□□□□ -0.3
CPNE3-210ENST00000621245 SMIM10L2AP0DMW4 78 aa13.2□□□□□ -0.3
CPNE3-210ENST00000621245 SMIM10L2BP0DMW5 78 aa13.2□□□□□ -0.3
CPNE3-210ENST00000621245 ICAM3P32942 547 aa13.2□□□□□ -0.3
CPNE3-210ENST00000621245 NECTIN1Q15223 517 aa13.2□□□□□ -0.3
CPNE3-210ENST00000621245 FAM117BQ6P1L5 589 aa13.2□□□□□ -0.3
CPNE3-210ENST00000621245 CNKSR3Q6P9H4 555 aa13.2□□□□□ -0.3
CPNE3-210ENST00000621245 SERINC5Q86VE9 423 aa13.2□□□□□ -0.3
CPNE3-210ENST00000621245 CCDC82Q8N4S0 544 aa13.2□□□□□ -0.3
CPNE3-210ENST00000621245 GDPD5Q8WTR4 605 aa13.2□□□□□ -0.3
CPNE3-210ENST00000621245 NECAB3Q96P71 396 aaPredicted RBP13.2□□□□□ -0.3
CPNE3-210ENST00000621245 GPR20Q99678 358 aa13.2□□□□□ -0.3
CPNE3-210ENST00000621245 MLXIPQ9HAP2 919 aa13.2□□□□□ -0.3
CPNE3-210ENST00000621245 COL4A6Q14031 1691 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms