RNA–Protein interactions for RNA: ENST00000618395.4

COL5A1-208, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL5A1, Length 8,437 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-208ENST00000618395 EXOC3O60645 756 aa16.14■□□□□ 0.18
COL5A1-208ENST00000618395 MRPS25P82663 173 aaKnown RBP16.14■□□□□ 0.18
COL5A1-208ENST00000618395 TFAP4Q01664 338 aa16.14■□□□□ 0.18
COL5A1-208ENST00000618395 DSG1Q02413 1049 aa16.14■□□□□ 0.18
COL5A1-208ENST00000618395 CCDC142Q17RM4 750 aa16.14■□□□□ 0.18
COL5A1-208ENST00000618395 FAM133AQ8N9E0 248 aa16.14■□□□□ 0.18
COL5A1-208ENST00000618395 TMOD3Q9NYL9 352 aa16.14■□□□□ 0.18
COL5A1-208ENST00000618395 TBC1D4O60343 1298 aa16.14■□□□□ 0.17
COL5A1-208ENST00000618395 SEC24DO94855 1032 aaPredicted RBP16.14■□□□□ 0.17
COL5A1-208ENST00000618395 CHEK2O96017 543 aa16.14■□□□□ 0.17
COL5A1-208ENST00000618395 NOSTRINQ8IVI9 506 aa16.14■□□□□ 0.17
COL5A1-208ENST00000618395 FIS1Q9Y3D6 152 aa16.14■□□□□ 0.17
COL5A1-208ENST00000618395 KRT17Q04695 432 aa16.14■□□□□ 0.17
COL5A1-208ENST00000618395 TAF12Q16514 161 aa16.14■□□□□ 0.17
COL5A1-208ENST00000618395 RABGAP1LQ5R372 815 aa16.14■□□□□ 0.17
COL5A1-208ENST00000618395 CENPUQ71F23 418 aa16.14■□□□□ 0.17
COL5A1-208ENST00000618395 PATL1Q86TB9 770 aaKnown RBP16.14■□□□□ 0.17
COL5A1-208ENST00000618395 MCUQ8NE86 351 aa16.14■□□□□ 0.17
COL5A1-208ENST00000618395 DEPDC1BQ8WUY9 529 aa16.14■□□□□ 0.17
COL5A1-208ENST00000618395 USP40Q9NVE5 1235 aa16.14■□□□□ 0.17
COL5A1-208ENST00000618395 ZSCAN32Q9NX65 697 aa16.14■□□□□ 0.17
COL5A1-208ENST00000618395 CLK1P49759 484 aaKnown RBP16.14■□□□□ 0.17
COL5A1-208ENST00000618395 CTTNQ14247 550 aaKnown RBP16.14■□□□□ 0.17
COL5A1-208ENST00000618395 HIF1AQ16665 826 aa16.14■□□□□ 0.17
COL5A1-208ENST00000618395 TMEM87BQ96K49 555 aa16.14■□□□□ 0.17
COL5A1-208ENST00000618395 LSM1O15116 133 aaKnown RBP16.14■□□□□ 0.17
COL5A1-208ENST00000618395 EPHB1P54762 984 aa16.14■□□□□ 0.17
COL5A1-208ENST00000618395 FAM129AQ9BZQ8 928 aa16.14■□□□□ 0.17
COL5A1-208ENST00000618395 SOX13Q9UN79 622 aa16.14■□□□□ 0.17
COL5A1-208ENST00000618395 N4BP1O75113 896 aaKnown RBP16.14■□□□□ 0.17
COL5A1-208ENST00000618395 PFKFB1P16118 471 aa16.14■□□□□ 0.17
COL5A1-208ENST00000618395 CALCRLQ16602 461 aa16.14■□□□□ 0.17
COL5A1-208ENST00000618395 KCNH5Q8NCM2 988 aa16.14■□□□□ 0.17
COL5A1-208ENST00000618395 LSG1Q9H089 658 aaKnown RBP16.14■□□□□ 0.17
COL5A1-208ENST00000618395 SBNO2Q9Y2G9 1366 aa16.14■□□□□ 0.17
COL5A1-208ENST00000618395 SLC27A2O14975 620 aa16.14■□□□□ 0.17
COL5A1-208ENST00000618395 TRIM71Q2Q1W2 868 aaKnown RBP16.14■□□□□ 0.17
COL5A1-208ENST00000618395 FOSL2P15408 326 aa16.13■□□□□ 0.17
COL5A1-208ENST00000618395 SLC9A1P19634 815 aa16.13■□□□□ 0.17
COL5A1-208ENST00000618395 BFSP2Q13515 415 aa16.13■□□□□ 0.17
COL5A1-208ENST00000618395 KLHL12Q53G59 568 aa16.13■□□□□ 0.17
COL5A1-208ENST00000618395 ASPSCR1Q9BZE9 553 aa16.13■□□□□ 0.17
COL5A1-208ENST00000618395 MPRIPQ6WCQ1 1025 aa16.13■□□□□ 0.17
COL5A1-208ENST00000618395 ATP6V1E2Q96A05 226 aa16.13■□□□□ 0.17
COL5A1-208ENST00000618395 TBC1D7Q9P0N9 293 aa16.13■□□□□ 0.17
COL5A1-208ENST00000618395 DCTN4Q9UJW0 460 aa16.13■□□□□ 0.17
COL5A1-208ENST00000618395 PALM2-AKAP2B1ALY0 433 aaPredicted RBP16.13■□□□□ 0.17
COL5A1-208ENST00000618395 FAM200BP0CF97 657 aa16.13■□□□□ 0.17
COL5A1-208ENST00000618395 IFNA8P32881 189 aa16.13■□□□□ 0.17
COL5A1-208ENST00000618395 SLC9C2Q5TAH2 1124 aa16.13■□□□□ 0.17
COL5A1-208ENST00000618395 PIK3AP1Q6ZUJ8 805 aa16.13■□□□□ 0.17
COL5A1-208ENST00000618395 VHLP40337 213 aa16.13■□□□□ 0.17
COL5A1-208ENST00000618395 EFTUD2Q15029 972 aaKnown RBP eCLIP16.13■□□□□ 0.17
COL5A1-208ENST00000618395 NEK8Q86SG6 692 aa16.13■□□□□ 0.17
COL5A1-208ENST00000618395 DTX3LQ8TDB6 740 aa16.13■□□□□ 0.17
COL5A1-208ENST00000618395 PBXIP1Q96AQ6 731 aa16.13■□□□□ 0.17
COL5A1-208ENST00000618395 CDC5LQ99459 802 aaKnown RBP16.13■□□□□ 0.17
COL5A1-208ENST00000618395 SOWAHDA6NJG2 315 aa16.13■□□□□ 0.17
COL5A1-208ENST00000618395 HSPA4LO95757 839 aa16.13■□□□□ 0.17
COL5A1-208ENST00000618395 RBL2Q08999 1139 aa16.13■□□□□ 0.17
COL5A1-208ENST00000618395 PRDM11Q9NQV5 511 aa16.13■□□□□ 0.17
COL5A1-208ENST00000618395 TRPC6Q9Y210 931 aa16.13■□□□□ 0.17
COL5A1-208ENST00000618395 ASXL1Q8IXJ9 1541 aa16.13■□□□□ 0.17
COL5A1-208ENST00000618395 TSC22D2O75157 780 aa16.13■□□□□ 0.17
COL5A1-208ENST00000618395 SCRN1Q12765 414 aa16.13■□□□□ 0.17
COL5A1-208ENST00000618395 BRIP1Q9BX63 1249 aa16.13■□□□□ 0.17
COL5A1-208ENST00000618395 KLHL20Q9Y2M5 609 aa16.13■□□□□ 0.17
COL5A1-208ENST00000618395 MYH6P13533 1939 aa16.12■□□□□ 0.17
COL5A1-208ENST00000618395 SRGAP2BP0DMP2 458 aa16.12■□□□□ 0.17
COL5A1-208ENST00000618395 CYP7A1P22680 504 aa16.12■□□□□ 0.17
COL5A1-208ENST00000618395 RTL3Q8N8U3 475 aaKnown RBP16.12■□□□□ 0.17
COL5A1-208ENST00000618395 EME1Q96AY2 570 aa16.12■□□□□ 0.17
COL5A1-208ENST00000618395 ZBTB21Q9ULJ3 1066 aa16.12■□□□□ 0.17
COL5A1-208ENST00000618395 DNM3Q9UQ16 869 aa16.12■□□□□ 0.17
COL5A1-208ENST00000618395 PFKFB2O60825 505 aa16.12■□□□□ 0.17
COL5A1-208ENST00000618395 TRIM25Q14258 630 aaKnown RBP16.12■□□□□ 0.17
COL5A1-208ENST00000618395 DMC1Q14565 340 aa16.12■□□□□ 0.17
COL5A1-208ENST00000618395 PYROXD1Q8WU10 500 aa16.12■□□□□ 0.17
COL5A1-208ENST00000618395 CCT8L2Q96SF2 557 aa16.12■□□□□ 0.17
COL5A1-208ENST00000618395 IKBKBO14920 756 aa16.12■□□□□ 0.17
COL5A1-208ENST00000618395 SASH1O94885 1247 aa16.12■□□□□ 0.17
COL5A1-208ENST00000618395 ATP8B2P98198 1209 aa16.12■□□□□ 0.17
COL5A1-208ENST00000618395 RFX8Q6ZV50 586 aa16.12■□□□□ 0.17
COL5A1-208ENST00000618395 BLZF1Q9H2G9 400 aa16.12■□□□□ 0.17
COL5A1-208ENST00000618395 CLEC4MQ9H2X3 399 aaPredicted RBP16.12■□□□□ 0.17
COL5A1-208ENST00000618395 CD248Q9HCU0 757 aa16.12■□□□□ 0.17
COL5A1-208ENST00000618395 POLR2FP61218 127 aaKnown RBP16.12■□□□□ 0.17
COL5A1-208ENST00000618395 SFR1Q86XK3 245 aa16.12■□□□□ 0.17
COL5A1-208ENST00000618395 TTC17Q96AE7 1141 aa16.12■□□□□ 0.17
COL5A1-208ENST00000618395 PGBD1Q96JS3 809 aa16.12■□□□□ 0.17
COL5A1-208ENST00000618395 AFPP02771 609 aaKnown RBP16.12■□□□□ 0.17
COL5A1-208ENST00000618395 P4HA1P13674 534 aa16.12■□□□□ 0.17
COL5A1-208ENST00000618395 IL12RB1P42701 662 aa16.12■□□□□ 0.17
COL5A1-208ENST00000618395 CAPRIN1Q14444 709 aaKnown RBP16.12■□□□□ 0.17
COL5A1-208ENST00000618395 BTBD7Q9P203 1132 aa16.12■□□□□ 0.17
COL5A1-208ENST00000618395 SOS1Q07889 1333 aaPredicted RBP16.12■□□□□ 0.17
COL5A1-208ENST00000618395 MICAL3Q7RTP6 2002 aa16.12■□□□□ 0.17
COL5A1-208ENST00000618395 TRIM49P0CI25 452 aa16.12■□□□□ 0.17
COL5A1-208ENST00000618395 TRIM49CP0CI26 452 aa16.12■□□□□ 0.17
COL5A1-208ENST00000618395 CASKIN1Q8WXD9 1431 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms