RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	IGSF22	Q8N9C0	903 aa		13.1	□□□□□ -0.31
VRK3-223	ENST00000601341	KIF18A	Q8NI77	898 aa		13.1	□□□□□ -0.31
VRK3-223	ENST00000601341	ENOX1	Q8TC92	643 aa	Known RBP	13.1	□□□□□ -0.31
VRK3-223	ENST00000601341	LENG9	Q96B70	501 aa		13.1	□□□□□ -0.31
VRK3-223	ENST00000601341	PDCD2L	Q9BRP1	358 aa		13.1	□□□□□ -0.31
VRK3-223	ENST00000601341	PCDHA12	Q9UN75	941 aa		13.1	□□□□□ -0.31
VRK3-223	ENST00000601341	IGLV3-22	A0A075B6J6	115 aa		13.09	□□□□□ -0.31
VRK3-223	ENST00000601341	MEIS1	O00470	390 aa		13.09	□□□□□ -0.31
VRK3-223	ENST00000601341	POLR2D	O15514	142 aa	Known RBP	13.09	□□□□□ -0.31
VRK3-223	ENST00000601341	UBASH3A	P57075	661 aa		13.09	□□□□□ -0.31
VRK3-223	ENST00000601341	SET	Q01105	290 aa	Predicted RBP	13.09	□□□□□ -0.31
VRK3-223	ENST00000601341	PGM5	Q15124	567 aa		13.09	□□□□□ -0.31
VRK3-223	ENST00000601341	NIPA1	Q7RTP0	329 aa		13.09	□□□□□ -0.31
VRK3-223	ENST00000601341	DNER	Q8NFT8	737 aa		13.09	□□□□□ -0.31
VRK3-223	ENST00000601341	CYP2W1	Q8TAV3	490 aa		13.09	□□□□□ -0.31
VRK3-223	ENST00000601341	ETNPPL	Q8TBG4	499 aa		13.09	□□□□□ -0.31
VRK3-223	ENST00000601341	MXRA8	Q9BRK3	442 aa		13.09	□□□□□ -0.31
VRK3-223	ENST00000601341	MORF4L1	Q9UBU8	362 aa		13.09	□□□□□ -0.31
VRK3-223	ENST00000601341	LRWD1	Q9UFC0	647 aa		13.09	□□□□□ -0.31
VRK3-223	ENST00000601341	MYH7B	A7E2Y1	1941 aa		13.09	□□□□□ -0.31
VRK3-223	ENST00000601341		A0A087WWV3	80 aa		13.09	□□□□□ -0.31
VRK3-223	ENST00000601341	FAM155A	B1AL88	458 aa	Predicted RBP	13.09	□□□□□ -0.31
VRK3-223	ENST00000601341	CCND2	P30279	289 aa		13.09	□□□□□ -0.31
VRK3-223	ENST00000601341	SREBF2	Q12772	1141 aa		13.09	□□□□□ -0.31
VRK3-223	ENST00000601341	MORC3	Q14149	939 aa		13.09	□□□□□ -0.31
VRK3-223	ENST00000601341	ARMCX5	Q6P1M9	558 aa		13.09	□□□□□ -0.31
VRK3-223	ENST00000601341	TMC6	Q7Z403	805 aa		13.09	□□□□□ -0.31
VRK3-223	ENST00000601341	ANKRD13C	Q8N6S4	541 aa		13.09	□□□□□ -0.31
VRK3-223	ENST00000601341	ZNF784	Q8NCA9	323 aa	Predicted RBP	13.09	□□□□□ -0.31
VRK3-223	ENST00000601341	IL31RA	Q8NI17	732 aa		13.09	□□□□□ -0.31
VRK3-223	ENST00000601341	SMARCE1	Q969G3	411 aa		13.09	□□□□□ -0.31
VRK3-223	ENST00000601341	TMX1	Q9H3N1	280 aa		13.09	□□□□□ -0.31
VRK3-223	ENST00000601341	POTEB2	H3BUK9	544 aa		13.08	□□□□□ -0.32
VRK3-223	ENST00000601341	MSH4	O15457	936 aa		13.08	□□□□□ -0.32
VRK3-223	ENST00000601341	ACTN4	O43707	911 aa	Known RBP	13.08	□□□□□ -0.32
VRK3-223	ENST00000601341	SERPINC1	P01008	464 aa		13.08	□□□□□ -0.32
VRK3-223	ENST00000601341	NR3C2	P08235	984 aa		13.08	□□□□□ -0.32
VRK3-223	ENST00000601341	BCR	P11274	1271 aa		13.08	□□□□□ -0.32
VRK3-223	ENST00000601341	MYCL	P12524	364 aa	Predicted RBP	13.08	□□□□□ -0.32
VRK3-223	ENST00000601341	ZNF18	P17022	549 aa		13.08	□□□□□ -0.32
VRK3-223	ENST00000601341	CDC25A	P30304	524 aa		13.08	□□□□□ -0.32
VRK3-223	ENST00000601341	SEMA3F	Q13275	785 aa		13.08	□□□□□ -0.32
VRK3-223	ENST00000601341	KCTD2	Q14681	263 aa		13.08	□□□□□ -0.32
VRK3-223	ENST00000601341	VSIG10L	Q86VR7	867 aa		13.08	□□□□□ -0.32
VRK3-223	ENST00000601341	VSTM4	Q8IW00	320 aa		13.08	□□□□□ -0.32
VRK3-223	ENST00000601341	PDCL2	Q8N4E4	241 aa		13.08	□□□□□ -0.32
VRK3-223	ENST00000601341	PDILT	Q8N807	584 aa		13.08	□□□□□ -0.32
VRK3-223	ENST00000601341	IQUB	Q8NA54	791 aa		13.08	□□□□□ -0.32
VRK3-223	ENST00000601341	PURB	Q96QR8	312 aa	Known RBP	13.08	□□□□□ -0.32
VRK3-223	ENST00000601341	IWS1	Q96ST2	819 aa		13.08	□□□□□ -0.32
VRK3-223	ENST00000601341	CCSER1	Q9C0I3	900 aa		13.08	□□□□□ -0.32
VRK3-223	ENST00000601341	ADD3	Q9UEY8	706 aa	Known RBP	13.08	□□□□□ -0.32
VRK3-223	ENST00000601341	UBIAD1	Q9Y5Z9	338 aa		13.08	□□□□□ -0.32
VRK3-223	ENST00000601341	PP2D1	A8MPX8	630 aa		13.07	□□□□□ -0.32
VRK3-223	ENST00000601341	IGF2BP3	O00425	579 aa	Known RBP eCLIP	13.07	□□□□□ -0.32
VRK3-223	ENST00000601341	STAM2	O75886	525 aa		13.07	□□□□□ -0.32
VRK3-223	ENST00000601341	SLFN14	P0C7P3	912 aa		13.07	□□□□□ -0.32
VRK3-223	ENST00000601341	FCER1A	P12319	257 aa		13.07	□□□□□ -0.32
VRK3-223	ENST00000601341	ITGB5	P18084	799 aa		13.07	□□□□□ -0.32
VRK3-223	ENST00000601341	MRPS9	P82933	396 aa	Known RBP	13.07	□□□□□ -0.32
VRK3-223	ENST00000601341	ARID5B	Q14865	1188 aa		13.07	□□□□□ -0.32
VRK3-223	ENST00000601341	WDR78	Q5VTH9	848 aa		13.07	□□□□□ -0.32
VRK3-223	ENST00000601341	E4F1	Q66K89	784 aa	Predicted RBP	13.07	□□□□□ -0.32
VRK3-223	ENST00000601341	RASSF8	Q8NHQ8	419 aa		13.07	□□□□□ -0.32
VRK3-223	ENST00000601341	GSDMA	Q96QA5	445 aa		13.07	□□□□□ -0.32
VRK3-223	ENST00000601341	MMP19	Q99542	508 aa		13.07	□□□□□ -0.32
VRK3-223	ENST00000601341	JADE2	Q9NQC1	790 aa		13.07	□□□□□ -0.32
VRK3-223	ENST00000601341	MAN1B1	Q9UKM7	699 aa		13.07	□□□□□ -0.32
VRK3-223	ENST00000601341	TAF1C	Q15572	869 aa	Predicted RBP	13.07	□□□□□ -0.32
VRK3-223	ENST00000601341	FAM110C	Q1W6H9	321 aa		13.07	□□□□□ -0.32
VRK3-223	ENST00000601341	KRT79	Q5XKE5	535 aa		13.07	□□□□□ -0.32
VRK3-223	ENST00000601341	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	13.07	□□□□□ -0.32
VRK3-223	ENST00000601341	SH3RF1	Q7Z6J0	888 aa		13.07	□□□□□ -0.32
VRK3-223	ENST00000601341	CABP7	Q86V35	215 aa		13.07	□□□□□ -0.32
VRK3-223	ENST00000601341	IFNL1	Q8IU54	200 aa		13.07	□□□□□ -0.32
VRK3-223	ENST00000601341	SLC5A5	Q92911	643 aa		13.07	□□□□□ -0.32
VRK3-223	ENST00000601341	GJA10	Q969M2	543 aa		13.07	□□□□□ -0.32
VRK3-223	ENST00000601341	DHX58	Q96C10	678 aa		13.07	□□□□□ -0.32
VRK3-223	ENST00000601341	ZNF577	Q9BSK1	485 aa		13.07	□□□□□ -0.32
VRK3-223	ENST00000601341	PORCN	Q9H237	461 aa		13.07	□□□□□ -0.32
VRK3-223	ENST00000601341	KCNH7	Q9NS40	1196 aa		13.07	□□□□□ -0.32
VRK3-223	ENST00000601341	RBBP6	Q7Z6E9	1792 aa	Known RBP	13.06	□□□□□ -0.32
VRK3-223	ENST00000601341		A0A087X0B3	334 aa		13.06	□□□□□ -0.32
VRK3-223	ENST00000601341	GOLGA6L9	A6NEM1	432 aa		13.06	□□□□□ -0.32
VRK3-223	ENST00000601341	POTEM	A6NI47	508 aa		13.06	□□□□□ -0.32
VRK3-223	ENST00000601341		B4DLN1	442 aa		13.06	□□□□□ -0.32
VRK3-223	ENST00000601341	MAFG	O15525	162 aa		13.06	□□□□□ -0.32
VRK3-223	ENST00000601341	AR	P10275	920 aa		13.06	□□□□□ -0.32
VRK3-223	ENST00000601341	BMP6	P22004	513 aa		13.06	□□□□□ -0.32
VRK3-223	ENST00000601341	CNTN2	Q02246	1040 aa		13.06	□□□□□ -0.32
VRK3-223	ENST00000601341	MTMR1	Q13613	665 aa		13.06	□□□□□ -0.32
VRK3-223	ENST00000601341	KARS	Q15046	597 aa	Known RBP	13.06	□□□□□ -0.32
VRK3-223	ENST00000601341	RRAGB	Q5VZM2	374 aa		13.06	□□□□□ -0.32
VRK3-223	ENST00000601341	FAM133A	Q8N9E0	248 aa		13.06	□□□□□ -0.32
VRK3-223	ENST00000601341	CALML4	Q96GE6	196 aa		13.06	□□□□□ -0.32
VRK3-223	ENST00000601341	ZFP91	Q96JP5	570 aa	Predicted RBP	13.06	□□□□□ -0.32
VRK3-223	ENST00000601341	UIMC1	Q96RL1	719 aa		13.06	□□□□□ -0.32
VRK3-223	ENST00000601341	MPHOSPH6	Q99547	160 aa	Known RBP	13.06	□□□□□ -0.32
VRK3-223	ENST00000601341	RIT2	Q99578	217 aa		13.06	□□□□□ -0.32
VRK3-223	ENST00000601341	L2HGDH	Q9H9P8	463 aa		13.06	□□□□□ -0.32

Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms