RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 ITGB5P18084 799 aa17.48■□□□□ 0.39
TRIM28-203ENST00000593582 AKAP17AQ02040 695 aaKnown RBP17.48■□□□□ 0.39
TRIM28-203ENST00000593582 MTMR1Q13613 665 aa17.48■□□□□ 0.39
TRIM28-203ENST00000593582 CCDC12Q8WUD4 166 aaPredicted RBP17.48■□□□□ 0.39
TRIM28-203ENST00000593582 FAM161BQ96MY7 647 aa17.48■□□□□ 0.39
TRIM28-203ENST00000593582 TM6SF1Q9BZW5 370 aa17.48■□□□□ 0.39
TRIM28-203ENST00000593582 TUT1Q9H6E5 874 aaKnown RBP17.48■□□□□ 0.39
TRIM28-203ENST00000593582 PRPF3O43395 683 aaKnown RBP17.47■□□□□ 0.39
TRIM28-203ENST00000593582 LGALS2P05162 132 aa17.47■□□□□ 0.39
TRIM28-203ENST00000593582 PDIA3P30101 505 aaKnown RBP17.47■□□□□ 0.39
TRIM28-203ENST00000593582 EVCP57679 992 aa17.47■□□□□ 0.39
TRIM28-203ENST00000593582 SP4Q02446 784 aa17.47■□□□□ 0.39
TRIM28-203ENST00000593582 DEFB128Q7Z7B8 93 aa17.47■□□□□ 0.39
TRIM28-203ENST00000593582 AFAP1L1Q8TED9 768 aa17.47■□□□□ 0.39
TRIM28-203ENST00000593582 CTAGE1Q96RT6 745 aa17.47■□□□□ 0.39
TRIM28-203ENST00000593582 GPR20Q99678 358 aa17.47■□□□□ 0.39
TRIM28-203ENST00000593582 SEMA6BQ9H3T3 888 aa17.47■□□□□ 0.39
TRIM28-203ENST00000593582 JADE2Q9NQC1 790 aa17.47■□□□□ 0.39
TRIM28-203ENST00000593582 CXXC1Q9P0U4 656 aaPredicted RBP17.47■□□□□ 0.39
TRIM28-203ENST00000593582 STXBP5LQ9Y2K9 1186 aa17.47■□□□□ 0.39
TRIM28-203ENST00000593582 UBIAD1Q9Y5Z9 338 aa17.47■□□□□ 0.39
TRIM28-203ENST00000593582 TMEM265A0A087WTH1 108 aa17.46■□□□□ 0.39
TRIM28-203ENST00000593582 ACTN1P12814 892 aa17.46■□□□□ 0.39
TRIM28-203ENST00000593582 KCNA2P16389 499 aa17.46■□□□□ 0.39
TRIM28-203ENST00000593582 DNAJB2P25686 324 aa17.46■□□□□ 0.39
TRIM28-203ENST00000593582 CCT2P78371 535 aaKnown RBP17.46■□□□□ 0.39
TRIM28-203ENST00000593582 AP3B2Q13367 1082 aa17.46■□□□□ 0.39
TRIM28-203ENST00000593582 TOB2Q14106 344 aaPredicted RBP17.46■□□□□ 0.39
TRIM28-203ENST00000593582 PHKBQ93100 1093 aa17.46■□□□□ 0.39
TRIM28-203ENST00000593582 ANO3Q9BYT9 981 aa17.46■□□□□ 0.39
TRIM28-203ENST00000593582 UPF3BQ9BZI7 483 aaKnown RBP17.46■□□□□ 0.39
TRIM28-203ENST00000593582 ZNF215Q9UL58 517 aaPredicted RBP17.46■□□□□ 0.39
TRIM28-203ENST00000593582 MYH7BA7E2Y1 1941 aa17.46■□□□□ 0.39
TRIM28-203ENST00000593582 ZBBXA8MT70 800 aa17.45■□□□□ 0.38
TRIM28-203ENST00000593582 ATP9AO75110 1047 aa17.45■□□□□ 0.38
TRIM28-203ENST00000593582 SELPP16109 830 aa17.45■□□□□ 0.38
TRIM28-203ENST00000593582 CLK2P49760 499 aaKnown RBP17.45■□□□□ 0.38
TRIM28-203ENST00000593582 PTK7Q13308 1070 aa17.45■□□□□ 0.38
TRIM28-203ENST00000593582 NTRK3Q16288 839 aa17.45■□□□□ 0.38
TRIM28-203ENST00000593582 VWCEQ96DN2 955 aa17.45■□□□□ 0.38
TRIM28-203ENST00000593582 PGBD1Q96JS3 809 aa17.45■□□□□ 0.38
TRIM28-203ENST00000593582 GUCD1Q96NT3 240 aa17.45■□□□□ 0.38
TRIM28-203ENST00000593582 MXRA8Q9BRK3 442 aa17.45■□□□□ 0.38
TRIM28-203ENST00000593582 RNF26Q9BY78 433 aaPredicted RBP17.45■□□□□ 0.38
TRIM28-203ENST00000593582 FTOQ9C0B1 505 aaKnown RBP eCLIP17.45■□□□□ 0.384e-6■■□□□ 13.7
TRIM28-203ENST00000593582 NCOA5Q9HCD5 579 aaKnown RBP17.45■□□□□ 0.38
TRIM28-203ENST00000593582 C6orf50Q9HD87 102 aa17.45■□□□□ 0.38
TRIM28-203ENST00000593582 PKD2L1Q9P0L9 805 aa17.45■□□□□ 0.38
TRIM28-203ENST00000593582 SLC4A7Q9Y6M7 1214 aa17.45■□□□□ 0.38
TRIM28-203ENST00000593582 ESYT2A0FGR8 921 aa17.44■□□□□ 0.38
TRIM28-203ENST00000593582 C17orf102A2RUQ5 167 aa17.44■□□□□ 0.38
TRIM28-203ENST00000593582 GRXCR1A8MXD5 290 aa17.44■□□□□ 0.38
TRIM28-203ENST00000593582 EIF5BO60841 1220 aaKnown RBP17.44■□□□□ 0.38
TRIM28-203ENST00000593582 PARNO95453 639 aaKnown RBP17.44■□□□□ 0.38
TRIM28-203ENST00000593582 SMIM10L2AP0DMW4 78 aa17.44■□□□□ 0.38
TRIM28-203ENST00000593582 SMIM10L2BP0DMW5 78 aa17.44■□□□□ 0.38
TRIM28-203ENST00000593582 CKBP12277 381 aa17.44■□□□□ 0.38
TRIM28-203ENST00000593582 IFNAR1P17181 557 aa17.44■□□□□ 0.38
TRIM28-203ENST00000593582 GNA11P29992 359 aa17.44■□□□□ 0.38
TRIM28-203ENST00000593582 SREBF1P36956 1147 aa17.44■□□□□ 0.38
TRIM28-203ENST00000593582 ZNF200P98182 395 aaPredicted RBP17.44■□□□□ 0.38
TRIM28-203ENST00000593582 RBL2Q08999 1139 aa17.44■□□□□ 0.38
TRIM28-203ENST00000593582 PKN1Q16512 942 aa17.44■□□□□ 0.38
TRIM28-203ENST00000593582 CEP55Q53EZ4 464 aa17.44■□□□□ 0.38
TRIM28-203ENST00000593582 UTP14CQ5TAP6 766 aaKnown RBP17.44■□□□□ 0.38
TRIM28-203ENST00000593582 MCTP2Q6DN12 878 aa17.44■□□□□ 0.38
TRIM28-203ENST00000593582 LRRC8DQ7L1W4 858 aa17.44■□□□□ 0.38
TRIM28-203ENST00000593582 DHX38Q92620 1227 aaKnown RBP17.44■□□□□ 0.38
TRIM28-203ENST00000593582 TIFAQ96CG3 184 aa17.44■□□□□ 0.38
TRIM28-203ENST00000593582 ZNF274Q96GC6 653 aaPredicted RBP17.44■□□□□ 0.38
TRIM28-203ENST00000593582 SLC26A6Q9BXS9 759 aa17.44■□□□□ 0.38
TRIM28-203ENST00000593582 ZMYND12Q9H0C1 365 aa17.44■□□□□ 0.38
TRIM28-203ENST00000593582 TTYH1Q9H313 450 aaPredicted RBP17.44■□□□□ 0.38
TRIM28-203ENST00000593582 KCNH7Q9NS40 1196 aa17.44■□□□□ 0.38
TRIM28-203ENST00000593582 PDRG1Q9NUG6 133 aa17.44■□□□□ 0.38
TRIM28-203ENST00000593582 TMEM260Q9NX78 707 aa17.44■□□□□ 0.38
TRIM28-203ENST00000593582 CPLX1O14810 134 aa17.43■□□□□ 0.38
TRIM28-203ENST00000593582 PPFIA3O75145 1194 aa17.43■□□□□ 0.38
TRIM28-203ENST00000593582 GNAT1P11488 350 aa17.43■□□□□ 0.38
TRIM28-203ENST00000593582 TCF7P36402 384 aaPredicted RBP17.43■□□□□ 0.38
TRIM28-203ENST00000593582 ZNF76P36508 570 aa17.43■□□□□ 0.38
TRIM28-203ENST00000593582 JAKMIP3Q5VZ66 844 aa17.43■□□□□ 0.38
TRIM28-203ENST00000593582 TRIM50Q86XT4 487 aa17.43■□□□□ 0.38
TRIM28-203ENST00000593582 TRIM22Q8IYM9 498 aa17.43■□□□□ 0.38
TRIM28-203ENST00000593582 REXO1Q8N1G1 1221 aaKnown RBP17.43■□□□□ 0.38
TRIM28-203ENST00000593582 CYP2W1Q8TAV3 490 aa17.43■□□□□ 0.38
TRIM28-203ENST00000593582 BICD2Q8TD16 824 aa17.43■□□□□ 0.38
TRIM28-203ENST00000593582 SEPT1Q8WYJ6 367 aa17.43■□□□□ 0.38
TRIM28-203ENST00000593582 ATP6V0A1Q93050 837 aa17.43■□□□□ 0.38
TRIM28-203ENST00000593582 PBX4Q9BYU1 374 aa17.43■□□□□ 0.38
TRIM28-203ENST00000593582 JPH1Q9HDC5 661 aaPredicted RBP17.43■□□□□ 0.38
TRIM28-203ENST00000593582 MSRAQ9UJ68 235 aa17.43■□□□□ 0.38
TRIM28-203ENST00000593582 TELO2Q9Y4R8 837 aa17.43■□□□□ 0.38
TRIM28-203ENST00000593582 HOXC8P31273 242 aa17.42■□□□□ 0.38
TRIM28-203ENST00000593582 PBX2P40425 430 aa17.42■□□□□ 0.38
TRIM28-203ENST00000593582 ARHGAP4P98171 946 aa17.42■□□□□ 0.38
TRIM28-203ENST00000593582 HIC1Q14526 733 aa17.42■□□□□ 0.38
TRIM28-203ENST00000593582 RAB30Q15771 203 aa17.42■□□□□ 0.38
TRIM28-203ENST00000593582 CPLX2Q6PUV4 134 aaKnown RBP17.42■□□□□ 0.38
TRIM28-203ENST00000593582 SERINC5Q86VE9 423 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms