RNA–Protein interactions for RNA: ENST00000580287.5

CDK5RAP3-217, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 1 (best)

Gene CDK5RAP3, Length 2,609 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-217ENST00000580287 Q4G0T1 1027 aa14.2□□□□□ -0.14
CDK5RAP3-217ENST00000580287 WDR78Q5VTH9 848 aa14.2□□□□□ -0.14
CDK5RAP3-217ENST00000580287 ARHGEF16Q5VV41 709 aa14.2□□□□□ -0.14
CDK5RAP3-217ENST00000580287 KLHL10Q6JEL2 608 aa14.2□□□□□ -0.14
CDK5RAP3-217ENST00000580287 FASTKD5Q7L8L6 764 aaKnown RBP14.2□□□□□ -0.14
CDK5RAP3-217ENST00000580287 SNX29Q8TEQ0 813 aa14.2□□□□□ -0.14
CDK5RAP3-217ENST00000580287 PTPN18Q99952 460 aa14.2□□□□□ -0.14
CDK5RAP3-217ENST00000580287 MOV10L1Q9BXT6 1211 aaKnown RBP14.2□□□□□ -0.14
CDK5RAP3-217ENST00000580287 CCSER1Q9C0I3 900 aa14.2□□□□□ -0.14
CDK5RAP3-217ENST00000580287 ATP2A1O14983 1001 aa14.19□□□□□ -0.14
CDK5RAP3-217ENST00000580287 GRB10Q13322 594 aa14.19□□□□□ -0.14
CDK5RAP3-217ENST00000580287 PGM5Q15124 567 aa14.19□□□□□ -0.14
CDK5RAP3-217ENST00000580287 NCAPH2Q6IBW4 605 aa14.19□□□□□ -0.14
CDK5RAP3-217ENST00000580287 ANKRD35Q8N283 1001 aa14.19□□□□□ -0.14
CDK5RAP3-217ENST00000580287 PNMA5Q96PV4 448 aa14.19□□□□□ -0.14
CDK5RAP3-217ENST00000580287 ACAD9Q9H845 621 aa14.19□□□□□ -0.14
CDK5RAP3-217ENST00000580287 PTPRFP10586 1907 aa14.19□□□□□ -0.14
CDK5RAP3-217ENST00000580287 PDHXO00330 501 aa14.19□□□□□ -0.14
CDK5RAP3-217ENST00000580287 EML1O00423 815 aa14.19□□□□□ -0.14
CDK5RAP3-217ENST00000580287 CTIFO43310 598 aaKnown RBP14.19□□□□□ -0.14
CDK5RAP3-217ENST00000580287 SORBS3O60504 671 aa14.19□□□□□ -0.14
CDK5RAP3-217ENST00000580287 ERCC3P19447 782 aa14.19□□□□□ -0.14
CDK5RAP3-217ENST00000580287 OAZ1P54368 228 aa14.19□□□□□ -0.14
CDK5RAP3-217ENST00000580287 CYP4A11Q02928 519 aa14.19□□□□□ -0.14
CDK5RAP3-217ENST00000580287 SPIRE1Q08AE8 756 aa14.19□□□□□ -0.14
CDK5RAP3-217ENST00000580287 ORC2Q13416 577 aaPredicted RBP14.19□□□□□ -0.14
CDK5RAP3-217ENST00000580287 SPRYD7Q5W111 196 aa14.19□□□□□ -0.14
CDK5RAP3-217ENST00000580287 PDCD2LQ9BRP1 358 aa14.19□□□□□ -0.14
CDK5RAP3-217ENST00000580287 BCAS3Q9H6U6 928 aa14.19□□□□□ -0.14
CDK5RAP3-217ENST00000580287 GPBP1L1Q9HC44 474 aaPredicted RBP14.19□□□□□ -0.14
CDK5RAP3-217ENST00000580287 PXMP2Q9NR77 195 aa14.19□□□□□ -0.14
CDK5RAP3-217ENST00000580287 DACH1Q9UI36 760 aa14.19□□□□□ -0.14
CDK5RAP3-217ENST00000580287 COL11A1P12107 1806 aaPredicted RBP14.19□□□□□ -0.14
CDK5RAP3-217ENST00000580287 MEIS1O00470 390 aa14.18□□□□□ -0.14
CDK5RAP3-217ENST00000580287 PGK2P07205 417 aa14.18□□□□□ -0.14
CDK5RAP3-217ENST00000580287 GSDMDP57764 484 aa14.18□□□□□ -0.14
CDK5RAP3-217ENST00000580287 GRM1Q13255 1194 aa14.18□□□□□ -0.14
CDK5RAP3-217ENST00000580287 CEP135Q66GS9 1140 aa14.18□□□□□ -0.14
CDK5RAP3-217ENST00000580287 MCTP2Q6DN12 878 aa14.18□□□□□ -0.14
CDK5RAP3-217ENST00000580287 SH3RF1Q7Z6J0 888 aa14.18□□□□□ -0.14
CDK5RAP3-217ENST00000580287 SMYD4Q8IYR2 804 aaPredicted RBP14.18□□□□□ -0.14
CDK5RAP3-217ENST00000580287 AK8Q96MA6 479 aa14.18□□□□□ -0.14
CDK5RAP3-217ENST00000580287 NFE2L3Q9Y4A8 694 aa14.18□□□□□ -0.14
CDK5RAP3-217ENST00000580287 ASTN1O14525 1302 aa14.18□□□□□ -0.14
CDK5RAP3-217ENST00000580287 POTEB3A0JP26 581 aa14.18□□□□□ -0.14
CDK5RAP3-217ENST00000580287 TESPA1A2RU30 521 aaPredicted RBP14.18□□□□□ -0.14
CDK5RAP3-217ENST00000580287 SFPQP23246 707 aaKnown RBP eCLIP14.18□□□□□ -0.14
CDK5RAP3-217ENST00000580287 NCBP1Q09161 790 aaKnown RBP14.18□□□□□ -0.14
CDK5RAP3-217ENST00000580287 POTEBQ6S5H4 581 aa14.18□□□□□ -0.14
CDK5RAP3-217ENST00000580287 MOXD1Q6UVY6 613 aa14.18□□□□□ -0.14
CDK5RAP3-217ENST00000580287 MLKLQ8NB16 471 aa14.18□□□□□ -0.14
CDK5RAP3-217ENST00000580287 SMCR8Q8TEV9 937 aaPredicted RBP14.18□□□□□ -0.14
CDK5RAP3-217ENST00000580287 MXRA8Q9BRK3 442 aa14.18□□□□□ -0.14
CDK5RAP3-217ENST00000580287 KCNH7Q9NS40 1196 aa14.18□□□□□ -0.14
CDK5RAP3-217ENST00000580287 RGL1Q9NZL6 768 aa14.18□□□□□ -0.14
CDK5RAP3-217ENST00000580287 MYPNQ86TC9 1320 aa14.18□□□□□ -0.14
CDK5RAP3-217ENST00000580287 RPTORQ8N122 1335 aa14.18□□□□□ -0.14
CDK5RAP3-217ENST00000580287 ATP9AO75110 1047 aa14.17□□□□□ -0.14
CDK5RAP3-217ENST00000580287 COBLO75128 1261 aa14.17□□□□□ -0.14
CDK5RAP3-217ENST00000580287 MED24O75448 989 aa14.17□□□□□ -0.14
CDK5RAP3-217ENST00000580287 ZNF157P51786 506 aaPredicted RBP14.17□□□□□ -0.14
CDK5RAP3-217ENST00000580287 STX17P56962 302 aa14.17□□□□□ -0.14
CDK5RAP3-217ENST00000580287 MORC3Q14149 939 aa14.17□□□□□ -0.14
CDK5RAP3-217ENST00000580287 PDIA5Q14554 519 aa14.17□□□□□ -0.14
CDK5RAP3-217ENST00000580287 KRT79Q5XKE5 535 aa14.17□□□□□ -0.14
CDK5RAP3-217ENST00000580287 ELOA2Q8IYF1 753 aaPredicted RBP14.17□□□□□ -0.14
CDK5RAP3-217ENST00000580287 ANKRD13CQ8N6S4 541 aa14.17□□□□□ -0.14
CDK5RAP3-217ENST00000580287 ZNF577Q9BSK1 485 aa14.17□□□□□ -0.14
CDK5RAP3-217ENST00000580287 PORCNQ9H237 461 aa14.17□□□□□ -0.14
CDK5RAP3-217ENST00000580287 PARP14Q460N5 1801 aa14.17□□□□□ -0.14
CDK5RAP3-217ENST00000580287 CBFA2T2O43439 604 aa14.17□□□□□ -0.14
CDK5RAP3-217ENST00000580287 NR3C2P08235 984 aa14.17□□□□□ -0.14
CDK5RAP3-217ENST00000580287 CCT6AP40227 531 aaKnown RBP14.17□□□□□ -0.14
CDK5RAP3-217ENST00000580287 SARSP49591 514 aaKnown RBP14.17□□□□□ -0.14
CDK5RAP3-217ENST00000580287 FKBP1BP68106 108 aa14.17□□□□□ -0.14
CDK5RAP3-217ENST00000580287 GHRHRQ02643 423 aa14.17□□□□□ -0.14
CDK5RAP3-217ENST00000580287 MCM6Q14566 821 aa14.17□□□□□ -0.14
CDK5RAP3-217ENST00000580287 LRCH2Q5VUJ6 765 aa14.17□□□□□ -0.14
CDK5RAP3-217ENST00000580287 TRMT1LQ7Z2T5 733 aaKnown RBP14.17□□□□□ -0.14
CDK5RAP3-217ENST00000580287 EFCC1Q9HA90 598 aa14.17□□□□□ -0.14
CDK5RAP3-217ENST00000580287 BLOC1S4Q9NUP1 217 aa14.17□□□□□ -0.14
CDK5RAP3-217ENST00000580287 IMPACTQ9P2X3 320 aa14.17□□□□□ -0.14
CDK5RAP3-217ENST00000580287 VAV3Q9UKW4 847 aa14.17□□□□□ -0.14
CDK5RAP3-217ENST00000580287 KIAA1024Q9UPX6 916 aa14.17□□□□□ -0.14
CDK5RAP3-217ENST00000580287 POTEFA5A3E0 1075 aa14.16□□□□□ -0.14
CDK5RAP3-217ENST00000580287 E9PMD0 336 aa14.16□□□□□ -0.14
CDK5RAP3-217ENST00000580287 IPO5O00410 1097 aaKnown RBP14.16□□□□□ -0.14
CDK5RAP3-217ENST00000580287 ZBTB39O15060 712 aa14.16□□□□□ -0.14
CDK5RAP3-217ENST00000580287 OSBPP22059 807 aa14.16□□□□□ -0.14
CDK5RAP3-217ENST00000580287 GTF2A2P52657 109 aa14.16□□□□□ -0.14
CDK5RAP3-217ENST00000580287 PSMC6P62333 389 aa14.16□□□□□ -0.14
CDK5RAP3-217ENST00000580287 DPYDQ12882 1025 aa14.16□□□□□ -0.14
CDK5RAP3-217ENST00000580287 PTPN14Q15678 1187 aa14.16□□□□□ -0.14
CDK5RAP3-217ENST00000580287 TKFCQ3LXA3 575 aa14.16□□□□□ -0.14
CDK5RAP3-217ENST00000580287 NT5DC1Q5TFE4 455 aa14.16□□□□□ -0.14
CDK5RAP3-217ENST00000580287 E4F1Q66K89 784 aaPredicted RBP14.16□□□□□ -0.14
CDK5RAP3-217ENST00000580287 POTEGQ6S5H5 508 aa14.16□□□□□ -0.14
CDK5RAP3-217ENST00000580287 SAPCD2Q86UD0 394 aa14.16□□□□□ -0.14
CDK5RAP3-217ENST00000580287 RIOX2Q8IUF8 465 aa14.16□□□□□ -0.14
CDK5RAP3-217ENST00000580287 SLFN12Q8IYM2 578 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms