RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 ACTN1P12814 892 aa11.61□□□□□ -0.55
SS18-210ENST00000578700 UBE2HP62256 183 aa11.61□□□□□ -0.55
SS18-210ENST00000578700 GUCY1B3Q02153 619 aa11.61□□□□□ -0.55
SS18-210ENST00000578700 TROAPQ12815 778 aa11.61□□□□□ -0.55
SS18-210ENST00000578700 NTRK3Q16288 839 aa11.61□□□□□ -0.55
SS18-210ENST00000578700 TKFCQ3LXA3 575 aa11.61□□□□□ -0.55
SS18-210ENST00000578700 RETREG2Q8NC44 543 aa11.61□□□□□ -0.55
SS18-210ENST00000578700 LRFN3Q9BTN0 628 aa11.61□□□□□ -0.55
SS18-210ENST00000578700 SEZ6LQ9BYH1 1024 aa11.61□□□□□ -0.55
SS18-210ENST00000578700 WDR11Q9BZH6 1224 aa11.61□□□□□ -0.55
SS18-210ENST00000578700 CCPG1Q9ULG6 757 aa11.61□□□□□ -0.55
SS18-210ENST00000578700 ZNF536O15090 1300 aa11.6□□□□□ -0.55
SS18-210ENST00000578700 BRWD1Q9NSI6 2320 aa11.6□□□□□ -0.55
SS18-210ENST00000578700 PIEZO1Q92508 2521 aa11.6□□□□□ -0.55
SS18-210ENST00000578700 KIF28PB7ZC32 967 aa11.6□□□□□ -0.55
SS18-210ENST00000578700 PRPF3O43395 683 aaKnown RBP11.6□□□□□ -0.55
SS18-210ENST00000578700 NMT2O60551 498 aa11.6□□□□□ -0.55
SS18-210ENST00000578700 TMTC3Q6ZXV5 915 aa11.6□□□□□ -0.55
SS18-210ENST00000578700 CCDC82Q8N4S0 544 aa11.6□□□□□ -0.55
SS18-210ENST00000578700 OR6J1Q8NGC5 347 aa11.6□□□□□ -0.55
SS18-210ENST00000578700 VWCEQ96DN2 955 aa11.6□□□□□ -0.55
SS18-210ENST00000578700 FAM217BQ9NTX9 383 aaPredicted RBP11.6□□□□□ -0.55
SS18-210ENST00000578700 POLR3EQ9NVU0 708 aa11.6□□□□□ -0.55
SS18-210ENST00000578700 CYP39A1Q9NYL5 469 aa11.6□□□□□ -0.55
SS18-210ENST00000578700 Q9Y3F1 56 aa11.6□□□□□ -0.55
SS18-210ENST00000578700 HCN4Q9Y3Q4 1203 aa11.6□□□□□ -0.55
SS18-210ENST00000578700 SCN5AQ14524 2016 aa11.59□□□□□ -0.55
SS18-210ENST00000578700 FAM86C2PA6NEL3 165 aa11.59□□□□□ -0.55
SS18-210ENST00000578700 ARHGEF15O94989 841 aa11.59□□□□□ -0.55
SS18-210ENST00000578700 PFKMP08237 780 aa11.59□□□□□ -0.55
SS18-210ENST00000578700 BAATQ14032 418 aaPredicted RBP11.59□□□□□ -0.55
SS18-210ENST00000578700 CCDC96Q2M329 555 aa11.59□□□□□ -0.55
SS18-210ENST00000578700 NBPF20Q3BBV1 942 aa11.59□□□□□ -0.55
SS18-210ENST00000578700 DUSP28Q4G0W2 176 aa11.59□□□□□ -0.55
SS18-210ENST00000578700 TMEM31Q5JXX7 168 aa11.59□□□□□ -0.55
SS18-210ENST00000578700 RCSD1Q6JBY9 416 aa11.59□□□□□ -0.55
SS18-210ENST00000578700 RASGRP2Q7LDG7 609 aa11.59□□□□□ -0.55
SS18-210ENST00000578700 HLA-CQ95604 372 aa11.59□□□□□ -0.55
SS18-210ENST00000578700 GDPD2Q9HCC8 539 aa11.59□□□□□ -0.55
SS18-210ENST00000578700 VTA1Q9NP79 307 aa11.59□□□□□ -0.55
SS18-210ENST00000578700 IL17RBQ9NRM6 502 aa11.59□□□□□ -0.55
SS18-210ENST00000578700 PRR12Q9ULL5 1215 aa11.59□□□□□ -0.55
SS18-210ENST00000578700 COG5Q9UP83 839 aa11.59□□□□□ -0.55
SS18-210ENST00000578700 NOD1Q9Y239 953 aa11.59□□□□□ -0.55
SS18-210ENST00000578700 LCTP09848 1927 aa11.58□□□□□ -0.55
SS18-210ENST00000578700 TLL1O43897 1013 aa11.58□□□□□ -0.56
SS18-210ENST00000578700 LETM1O95202 739 aaPredicted RBP11.58□□□□□ -0.56
SS18-210ENST00000578700 PARP1P09874 1014 aaKnown RBP11.58□□□□□ -0.56
SS18-210ENST00000578700 IQCF3P0C7M6 154 aa11.58□□□□□ -0.56
SS18-210ENST00000578700 CALML3P27482 149 aa11.58□□□□□ -0.56
SS18-210ENST00000578700 SLC16A2P36021 539 aa11.58□□□□□ -0.56
SS18-210ENST00000578700 CPT1AP50416 773 aa11.58□□□□□ -0.56
SS18-210ENST00000578700 PURAQ00577 322 aaKnown RBP11.58□□□□□ -0.56
SS18-210ENST00000578700 TAP1Q03518 808 aa11.58□□□□□ -0.56
SS18-210ENST00000578700 GRM4Q14833 912 aa11.58□□□□□ -0.56
SS18-210ENST00000578700 SF3A1Q15459 793 aaKnown RBP11.58□□□□□ -0.56
SS18-210ENST00000578700 TTBK2Q6IQ55 1244 aa11.58□□□□□ -0.56
SS18-210ENST00000578700 CAVIN1Q6NZI2 390 aaKnown RBP11.58□□□□□ -0.56
SS18-210ENST00000578700 GMCL1Q96IK5 515 aa11.58□□□□□ -0.56
SS18-210ENST00000578700 SLC9A7Q96T83 725 aa11.58□□□□□ -0.56
SS18-210ENST00000578700 TMEM47Q9BQJ4 181 aa11.58□□□□□ -0.56
SS18-210ENST00000578700 MTG1Q9BT17 334 aaPredicted RBP11.58□□□□□ -0.56
SS18-210ENST00000578700 ZBED2Q9BTP6 218 aa11.58□□□□□ -0.56
SS18-210ENST00000578700 TFIP11Q9UBB9 837 aaKnown RBP11.58□□□□□ -0.56
SS18-210ENST00000578700 SYNPO2Q9UMS6 1093 aa11.58□□□□□ -0.56
SS18-210ENST00000578700 V9GY48 417 aaPredicted RBP11.58□□□□□ -0.56
SS18-210ENST00000578700 PLIN4Q96Q06 1357 aa11.57□□□□□ -0.56
SS18-210ENST00000578700 GOLGA6L3A6NEY3 463 aa11.57□□□□□ -0.56
SS18-210ENST00000578700 ALDH5A1P51649 535 aaPredicted RBP11.57□□□□□ -0.56
SS18-210ENST00000578700 GRB10Q13322 594 aa11.57□□□□□ -0.56
SS18-210ENST00000578700 BRDTQ58F21 947 aaPredicted RBP11.57□□□□□ -0.56
SS18-210ENST00000578700 L1TD1Q5T7N2 865 aaKnown RBP11.57□□□□□ -0.56
SS18-210ENST00000578700 FAM173BQ6P4H8 233 aa11.57□□□□□ -0.56
SS18-210ENST00000578700 SPRED2Q7Z698 418 aa11.57□□□□□ -0.56
SS18-210ENST00000578700 TMCO2Q7Z6W1 182 aaPredicted RBP11.57□□□□□ -0.56
SS18-210ENST00000578700 HERC6Q8IVU3 1022 aa11.57□□□□□ -0.56
SS18-210ENST00000578700 PHOSPHO2Q8TCD6 241 aa11.57□□□□□ -0.56
SS18-210ENST00000578700 LEO1Q8WVC0 666 aaPredicted RBP11.57□□□□□ -0.56
SS18-210ENST00000578700 COPS5Q92905 334 aa11.57□□□□□ -0.56
SS18-210ENST00000578700 CHAMP1Q96JM3 812 aa11.57□□□□□ -0.56
SS18-210ENST00000578700 GPCPD1Q9NPB8 672 aa11.57□□□□□ -0.56
SS18-210ENST00000578700 ADD3Q9UEY8 706 aaKnown RBP11.57□□□□□ -0.56
SS18-210ENST00000578700 TRIOO75962 3097 aa11.56□□□□□ -0.56
SS18-210ENST00000578700 TRIP12Q14669 1992 aaPredicted RBP11.56□□□□□ -0.56
SS18-210ENST00000578700 NFIBO00712 420 aa11.56□□□□□ -0.56
SS18-210ENST00000578700 PLEKHA8P1O95397 391 aa11.56□□□□□ -0.56
SS18-210ENST00000578700 MMP1P03956 469 aa11.56□□□□□ -0.56
SS18-210ENST00000578700 ICAM1P05362 532 aa11.56□□□□□ -0.56
SS18-210ENST00000578700 POU3F3P20264 500 aaPredicted RBP11.56□□□□□ -0.56
SS18-210ENST00000578700 KCNJ6P48051 423 aa11.56□□□□□ -0.56
SS18-210ENST00000578700 CEBPZQ03701 1054 aaKnown RBP11.56□□□□□ -0.56
SS18-210ENST00000578700 PDE4DQ08499 809 aa11.56□□□□□ -0.56
SS18-210ENST00000578700 STK38Q15208 465 aa11.56□□□□□ -0.56
SS18-210ENST00000578700 MYSM1Q5VVJ2 828 aa11.56□□□□□ -0.56
SS18-210ENST00000578700 FAM177A1Q8N128 213 aaPredicted RBP11.56□□□□□ -0.56
SS18-210ENST00000578700 CMTR1Q8N1G2 835 aaKnown RBP11.56□□□□□ -0.56
SS18-210ENST00000578700 BICD2Q8TD16 824 aa11.56□□□□□ -0.56
SS18-210ENST00000578700 GPT2Q8TD30 523 aa11.56□□□□□ -0.56
SS18-210ENST00000578700 KCNG4Q8TDN1 519 aa11.56□□□□□ -0.56
SS18-210ENST00000578700 CCDC12Q8WUD4 166 aaPredicted RBP11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms