RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 TMTC3Q6ZXV5 915 aa11.6□□□□□ -0.55
SS18-207ENST00000577636 CCDC82Q8N4S0 544 aa11.6□□□□□ -0.55
SS18-207ENST00000577636 OR6J1Q8NGC5 347 aa11.6□□□□□ -0.55
SS18-207ENST00000577636 VWCEQ96DN2 955 aa11.6□□□□□ -0.55
SS18-207ENST00000577636 FAM217BQ9NTX9 383 aaPredicted RBP11.6□□□□□ -0.55
SS18-207ENST00000577636 POLR3EQ9NVU0 708 aa11.6□□□□□ -0.55
SS18-207ENST00000577636 CYP39A1Q9NYL5 469 aa11.6□□□□□ -0.55
SS18-207ENST00000577636 Q9Y3F1 56 aa11.6□□□□□ -0.55
SS18-207ENST00000577636 HCN4Q9Y3Q4 1203 aa11.6□□□□□ -0.55
SS18-207ENST00000577636 FAM86C2PA6NEL3 165 aa11.59□□□□□ -0.55
SS18-207ENST00000577636 ARHGEF15O94989 841 aa11.59□□□□□ -0.55
SS18-207ENST00000577636 PFKMP08237 780 aa11.59□□□□□ -0.55
SS18-207ENST00000577636 BAATQ14032 418 aaPredicted RBP11.59□□□□□ -0.55
SS18-207ENST00000577636 CCDC96Q2M329 555 aa11.59□□□□□ -0.55
SS18-207ENST00000577636 NBPF20Q3BBV1 942 aa11.59□□□□□ -0.55
SS18-207ENST00000577636 DUSP28Q4G0W2 176 aa11.59□□□□□ -0.55
SS18-207ENST00000577636 TMEM31Q5JXX7 168 aa11.59□□□□□ -0.55
SS18-207ENST00000577636 RCSD1Q6JBY9 416 aa11.59□□□□□ -0.55
SS18-207ENST00000577636 RASGRP2Q7LDG7 609 aa11.59□□□□□ -0.55
SS18-207ENST00000577636 HLA-CQ95604 372 aa11.59□□□□□ -0.55
SS18-207ENST00000577636 RNF39Q9H2S5 420 aa11.59□□□□□ -0.55
SS18-207ENST00000577636 GDPD2Q9HCC8 539 aa11.59□□□□□ -0.55
SS18-207ENST00000577636 VTA1Q9NP79 307 aa11.59□□□□□ -0.55
SS18-207ENST00000577636 IL17RBQ9NRM6 502 aa11.59□□□□□ -0.55
SS18-207ENST00000577636 PRR12Q9ULL5 1215 aa11.59□□□□□ -0.55
SS18-207ENST00000577636 COG5Q9UP83 839 aa11.59□□□□□ -0.55
SS18-207ENST00000577636 NOD1Q9Y239 953 aa11.59□□□□□ -0.55
SS18-207ENST00000577636 TLL1O43897 1013 aa11.58□□□□□ -0.56
SS18-207ENST00000577636 LETM1O95202 739 aaPredicted RBP11.58□□□□□ -0.56
SS18-207ENST00000577636 PARP1P09874 1014 aaKnown RBP11.58□□□□□ -0.56
SS18-207ENST00000577636 IQCF3P0C7M6 154 aa11.58□□□□□ -0.56
SS18-207ENST00000577636 CALML3P27482 149 aa11.58□□□□□ -0.56
SS18-207ENST00000577636 SLC16A2P36021 539 aa11.58□□□□□ -0.56
SS18-207ENST00000577636 CPT1AP50416 773 aa11.58□□□□□ -0.56
SS18-207ENST00000577636 PURAQ00577 322 aaKnown RBP11.58□□□□□ -0.56
SS18-207ENST00000577636 TAP1Q03518 808 aa11.58□□□□□ -0.56
SS18-207ENST00000577636 GRM4Q14833 912 aa11.58□□□□□ -0.56
SS18-207ENST00000577636 SF3A1Q15459 793 aaKnown RBP11.58□□□□□ -0.56
SS18-207ENST00000577636 TTBK2Q6IQ55 1244 aa11.58□□□□□ -0.56
SS18-207ENST00000577636 CAVIN1Q6NZI2 390 aaKnown RBP11.58□□□□□ -0.56
SS18-207ENST00000577636 GMCL1Q96IK5 515 aa11.58□□□□□ -0.56
SS18-207ENST00000577636 SLC9A7Q96T83 725 aa11.58□□□□□ -0.56
SS18-207ENST00000577636 TMEM47Q9BQJ4 181 aa11.58□□□□□ -0.56
SS18-207ENST00000577636 MTG1Q9BT17 334 aaPredicted RBP11.58□□□□□ -0.56
SS18-207ENST00000577636 ZBED2Q9BTP6 218 aa11.58□□□□□ -0.56
SS18-207ENST00000577636 TFIP11Q9UBB9 837 aaKnown RBP11.58□□□□□ -0.56
SS18-207ENST00000577636 SYNPO2Q9UMS6 1093 aa11.58□□□□□ -0.56
SS18-207ENST00000577636 V9GY48 417 aaPredicted RBP11.58□□□□□ -0.56
SS18-207ENST00000577636 PLIN4Q96Q06 1357 aa11.57□□□□□ -0.56
SS18-207ENST00000577636 GOLGA6L3A6NEY3 463 aa11.57□□□□□ -0.56
SS18-207ENST00000577636 ALDH5A1P51649 535 aaPredicted RBP11.57□□□□□ -0.56
SS18-207ENST00000577636 GRB10Q13322 594 aa11.57□□□□□ -0.56
SS18-207ENST00000577636 BRDTQ58F21 947 aaPredicted RBP11.57□□□□□ -0.56
SS18-207ENST00000577636 L1TD1Q5T7N2 865 aaKnown RBP11.57□□□□□ -0.56
SS18-207ENST00000577636 FAM173BQ6P4H8 233 aa11.57□□□□□ -0.56
SS18-207ENST00000577636 SPRED2Q7Z698 418 aa11.57□□□□□ -0.56
SS18-207ENST00000577636 TMCO2Q7Z6W1 182 aaPredicted RBP11.57□□□□□ -0.56
SS18-207ENST00000577636 HERC6Q8IVU3 1022 aa11.57□□□□□ -0.56
SS18-207ENST00000577636 PHOSPHO2Q8TCD6 241 aa11.57□□□□□ -0.56
SS18-207ENST00000577636 LEO1Q8WVC0 666 aaPredicted RBP11.57□□□□□ -0.56
SS18-207ENST00000577636 COPS5Q92905 334 aa11.57□□□□□ -0.56
SS18-207ENST00000577636 CHAMP1Q96JM3 812 aa11.57□□□□□ -0.56
SS18-207ENST00000577636 GPCPD1Q9NPB8 672 aa11.57□□□□□ -0.56
SS18-207ENST00000577636 ADD3Q9UEY8 706 aaKnown RBP11.57□□□□□ -0.56
SS18-207ENST00000577636 GBF1Q92538 1859 aa11.57□□□□□ -0.56
SS18-207ENST00000577636 MYH4Q9Y623 1939 aa11.56□□□□□ -0.56
SS18-207ENST00000577636 NFIBO00712 420 aa11.56□□□□□ -0.56
SS18-207ENST00000577636 PLEKHA8P1O95397 391 aa11.56□□□□□ -0.56
SS18-207ENST00000577636 MMP1P03956 469 aa11.56□□□□□ -0.56
SS18-207ENST00000577636 ICAM1P05362 532 aa11.56□□□□□ -0.56
SS18-207ENST00000577636 POU3F3P20264 500 aaPredicted RBP11.56□□□□□ -0.56
SS18-207ENST00000577636 KCNJ6P48051 423 aa11.56□□□□□ -0.56
SS18-207ENST00000577636 CACNB1Q02641 598 aaPredicted RBP11.56□□□□□ -0.56
SS18-207ENST00000577636 CEBPZQ03701 1054 aaKnown RBP11.56□□□□□ -0.56
SS18-207ENST00000577636 PDE4DQ08499 809 aa11.56□□□□□ -0.56
SS18-207ENST00000577636 STK38Q15208 465 aa11.56□□□□□ -0.56
SS18-207ENST00000577636 MYSM1Q5VVJ2 828 aa11.56□□□□□ -0.56
SS18-207ENST00000577636 FAM177A1Q8N128 213 aaPredicted RBP11.56□□□□□ -0.56
SS18-207ENST00000577636 CMTR1Q8N1G2 835 aaKnown RBP11.56□□□□□ -0.56
SS18-207ENST00000577636 BICD2Q8TD16 824 aa11.56□□□□□ -0.56
SS18-207ENST00000577636 GPT2Q8TD30 523 aa11.56□□□□□ -0.56
SS18-207ENST00000577636 KCNG4Q8TDN1 519 aa11.56□□□□□ -0.56
SS18-207ENST00000577636 CCDC12Q8WUD4 166 aaPredicted RBP11.56□□□□□ -0.56
SS18-207ENST00000577636 KHSRPQ92945 711 aaKnown RBP eCLIP11.56□□□□□ -0.563e-7■■■■□ 20.8
SS18-207ENST00000577636 FOXP1Q9H334 677 aaPredicted RBP11.56□□□□□ -0.56
SS18-207ENST00000577636 SEC63Q9UGP8 760 aaKnown RBP11.56□□□□□ -0.56
SS18-207ENST00000577636 MTUS1Q9ULD2 1270 aa11.56□□□□□ -0.56
SS18-207ENST00000577636 FRMPD2Q68DX3 1309 aaPredicted RBP11.56□□□□□ -0.56
SS18-207ENST00000577636 PRRC2BQ5JSZ5 2229 aaKnown RBP11.55□□□□□ -0.56
SS18-207ENST00000577636 GREB1LQ9C091 1923 aaPredicted RBP11.55□□□□□ -0.56
SS18-207ENST00000577636 KLRF2D3W0D1 207 aa11.55□□□□□ -0.56
SS18-207ENST00000577636 RBAK-RBAKDNI3L0D1 243 aa11.55□□□□□ -0.56
SS18-207ENST00000577636 PLA2G6O60733 806 aa11.55□□□□□ -0.56
SS18-207ENST00000577636 GADD45BO75293 160 aaPredicted RBP11.55□□□□□ -0.56
SS18-207ENST00000577636 YEATS4O95619 227 aa11.55□□□□□ -0.56
SS18-207ENST00000577636 SCG2P13521 617 aa11.55□□□□□ -0.56
SS18-207ENST00000577636 U2AF2P26368 475 aaKnown RBP eCLIP11.55□□□□□ -0.561e-7■■■□□ 18
SS18-207ENST00000577636 SMARCA1P28370 1054 aa11.55□□□□□ -0.56
SS18-207ENST00000577636 RFC2P35250 354 aa11.55□□□□□ -0.56
SS18-207ENST00000577636 KRT2P35908 639 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms