RNA–Protein interactions for RNA: ENST00000576613.5

CTDNEP1-212, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 3

Gene CTDNEP1, Length 606 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-212ENST00000576613 MUC6Q6W4X9 2439 aa13.52□□□□□ -0.25
CTDNEP1-212ENST00000576613 PIEZO1Q92508 2521 aa13.51□□□□□ -0.25
CTDNEP1-212ENST00000576613 KLRF2D3W0D1 207 aa13.51□□□□□ -0.25
CTDNEP1-212ENST00000576613 HIP1O00291 1037 aa13.51□□□□□ -0.25
CTDNEP1-212ENST00000576613 UPP2O95045 317 aa13.51□□□□□ -0.25
CTDNEP1-212ENST00000576613 SMIM10L2AP0DMW4 78 aa13.51□□□□□ -0.25
CTDNEP1-212ENST00000576613 SMIM10L2BP0DMW5 78 aa13.51□□□□□ -0.25
CTDNEP1-212ENST00000576613 GNAT1P11488 350 aa13.51□□□□□ -0.25
CTDNEP1-212ENST00000576613 HOXA13P31271 388 aaPredicted RBP13.51□□□□□ -0.25
CTDNEP1-212ENST00000576613 HOXC8P31273 242 aa13.51□□□□□ -0.25
CTDNEP1-212ENST00000576613 RRP1P56182 461 aaKnown RBP13.51□□□□□ -0.25
CTDNEP1-212ENST00000576613 GPM6BQ13491 265 aa13.51□□□□□ -0.25
CTDNEP1-212ENST00000576613 GNPTABQ3T906 1256 aa13.51□□□□□ -0.25
CTDNEP1-212ENST00000576613 STAG2Q8N3U4 1231 aa13.51□□□□□ -0.25
CTDNEP1-212ENST00000576613 APBB2Q92870 758 aa13.51□□□□□ -0.25
CTDNEP1-212ENST00000576613 TOP1MTQ969P6 601 aa13.51□□□□□ -0.25
CTDNEP1-212ENST00000576613 PABPC5Q96DU9 382 aaKnown RBP13.51□□□□□ -0.25
CTDNEP1-212ENST00000576613 UIMC1Q96RL1 719 aa13.51□□□□□ -0.25
CTDNEP1-212ENST00000576613 DSCC1Q9BVC3 393 aa13.51□□□□□ -0.25
CTDNEP1-212ENST00000576613 USP26Q9BXU7 913 aa13.51□□□□□ -0.25
CTDNEP1-212ENST00000576613 NSUN3Q9H649 340 aaKnown RBP13.51□□□□□ -0.25
CTDNEP1-212ENST00000576613 H3BQ06 376 aaPredicted RBP13.5□□□□□ -0.25
CTDNEP1-212ENST00000576613 GCOM1H8Y6P7 765 aaPredicted RBP13.5□□□□□ -0.25
CTDNEP1-212ENST00000576613 DCXO43602 365 aa13.5□□□□□ -0.25
CTDNEP1-212ENST00000576613 PPP1R11O60927 126 aaPredicted RBP13.5□□□□□ -0.25
CTDNEP1-212ENST00000576613 LGALS2P05162 132 aa13.5□□□□□ -0.25
CTDNEP1-212ENST00000576613 CTSHP09668 335 aa13.5□□□□□ -0.25
CTDNEP1-212ENST00000576613 POLR2MP0CAP2 368 aa13.5□□□□□ -0.25
CTDNEP1-212ENST00000576613 SP2Q02086 613 aa13.5□□□□□ -0.25
CTDNEP1-212ENST00000576613 EP400NLQ6ZTU2 488 aa13.5□□□□□ -0.25
CTDNEP1-212ENST00000576613 HOMER1Q86YM7 354 aa13.5□□□□□ -0.25
CTDNEP1-212ENST00000576613 TMEM192Q8IY95 271 aa13.5□□□□□ -0.25
CTDNEP1-212ENST00000576613 IL31RAQ8NI17 732 aa13.5□□□□□ -0.25
CTDNEP1-212ENST00000576613 MTMR8Q96EF0 704 aa13.5□□□□□ -0.25
CTDNEP1-212ENST00000576613 IFIH1Q9BYX4 1025 aaKnown RBP13.5□□□□□ -0.25
CTDNEP1-212ENST00000576613 PRKAG3Q9UGI9 489 aa13.5□□□□□ -0.25
CTDNEP1-212ENST00000576613 ZNF215Q9UL58 517 aaPredicted RBP13.5□□□□□ -0.25
CTDNEP1-212ENST00000576613 TREHO43280 583 aa13.49□□□□□ -0.25
CTDNEP1-212ENST00000576613 NCK2O43639 380 aa13.49□□□□□ -0.25
CTDNEP1-212ENST00000576613 STAM2O75886 525 aa13.49□□□□□ -0.25
CTDNEP1-212ENST00000576613 NEDD9Q14511 834 aa13.49□□□□□ -0.25
CTDNEP1-212ENST00000576613 TCEAL5Q5H9L2 206 aa13.49□□□□□ -0.25
CTDNEP1-212ENST00000576613 FCHSD1Q86WN1 690 aa13.49□□□□□ -0.25
CTDNEP1-212ENST00000576613 RNPEPQ9H4A4 650 aa13.49□□□□□ -0.25
CTDNEP1-212ENST00000576613 MAD2L2Q9UI95 211 aa13.49□□□□□ -0.25
CTDNEP1-212ENST00000576613 PALM3A6NDB9 673 aaPredicted RBP13.48□□□□□ -0.25
CTDNEP1-212ENST00000576613 COL19A1Q14993 1142 aa13.48□□□□□ -0.25
CTDNEP1-212ENST00000576613 METTL7BQ6UX53 244 aa13.48□□□□□ -0.25
CTDNEP1-212ENST00000576613 FIBCD1Q8N539 461 aa13.48□□□□□ -0.25
CTDNEP1-212ENST00000576613 IL17RAQ96F46 866 aa13.48□□□□□ -0.25
CTDNEP1-212ENST00000576613 UPF3BQ9BZI7 483 aaKnown RBP13.48□□□□□ -0.25
CTDNEP1-212ENST00000576613 KCNH6Q9H252 994 aa13.48□□□□□ -0.25
CTDNEP1-212ENST00000576613 OSBPL3Q9H4L5 887 aa13.48□□□□□ -0.25
CTDNEP1-212ENST00000576613 CLDND1Q9NY35 253 aa13.48□□□□□ -0.25
CTDNEP1-212ENST00000576613 RWDD3Q9Y3V2 267 aa13.48□□□□□ -0.25
CTDNEP1-212ENST00000576613 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.47□□□□□ -0.25
CTDNEP1-212ENST00000576613 FIBPO43427 364 aa13.47□□□□□ -0.25
CTDNEP1-212ENST00000576613 RB1P06400 928 aa13.47□□□□□ -0.25
CTDNEP1-212ENST00000576613 ICAM3P32942 547 aa13.47□□□□□ -0.25
CTDNEP1-212ENST00000576613 CTNNB1P35222 781 aa13.47□□□□□ -0.25
CTDNEP1-212ENST00000576613 ZP2Q05996 745 aa13.47□□□□□ -0.25
CTDNEP1-212ENST00000576613 TRDNQ13061 729 aa13.47□□□□□ -0.25
CTDNEP1-212ENST00000576613 AAMPQ13685 434 aa13.47□□□□□ -0.25
CTDNEP1-212ENST00000576613 SEC23AQ15436 765 aa13.47□□□□□ -0.25
CTDNEP1-212ENST00000576613 B4GALNT3Q6L9W6 998 aa13.47□□□□□ -0.25
CTDNEP1-212ENST00000576613 ALYREFQ86V81 257 aaKnown RBP13.47□□□□□ -0.25
CTDNEP1-212ENST00000576613 ADHFE1Q8IWW8 467 aa13.47□□□□□ -0.25
CTDNEP1-212ENST00000576613 GPKOWQ92917 476 aaPredicted RBP eCLIP13.47□□□□□ -0.25
CTDNEP1-212ENST00000576613 ZFP91Q96JP5 570 aaPredicted RBP13.47□□□□□ -0.25
CTDNEP1-212ENST00000576613 INPP4AQ96PE3 977 aaPredicted RBP13.47□□□□□ -0.25
CTDNEP1-212ENST00000576613 POP1Q99575 1024 aaKnown RBP13.47□□□□□ -0.25
CTDNEP1-212ENST00000576613 C11orf84Q9BUA3 381 aaPredicted RBP13.47□□□□□ -0.25
CTDNEP1-212ENST00000576613 LMAN2LQ9H0V9 348 aa13.47□□□□□ -0.25
CTDNEP1-212ENST00000576613 SETD4Q9NVD3 440 aa13.47□□□□□ -0.25
CTDNEP1-212ENST00000576613 FRMPD4Q14CM0 1322 aa13.46□□□□□ -0.25
CTDNEP1-212ENST00000576613 PNMA6FA0A0J9YX94 578 aa13.46□□□□□ -0.25
CTDNEP1-212ENST00000576613 POTEB3A0JP26 581 aa13.46□□□□□ -0.25
CTDNEP1-212ENST00000576613 ERICH2A1L162 156 aa13.46□□□□□ -0.25
CTDNEP1-212ENST00000576613 SPATA31C2B4DYI2 1134 aa13.46□□□□□ -0.25
CTDNEP1-212ENST00000576613 C5orf67F2Z3F1 127 aa13.46□□□□□ -0.25
CTDNEP1-212ENST00000576613 RBAK-RBAKDNI3L0D1 243 aa13.46□□□□□ -0.25
CTDNEP1-212ENST00000576613 ARHGAP4P98171 946 aa13.46□□□□□ -0.25
CTDNEP1-212ENST00000576613 FAM26DQ5JW98 314 aa13.46□□□□□ -0.25
CTDNEP1-212ENST00000576613 POTEBQ6S5H4 581 aa13.46□□□□□ -0.25
CTDNEP1-212ENST00000576613 CYFIP1Q7L576 1253 aa13.46□□□□□ -0.25
CTDNEP1-212ENST00000576613 CHD1LQ86WJ1 897 aa13.46□□□□□ -0.25
CTDNEP1-212ENST00000576613 PLEKHM2Q8IWE5 1019 aa13.46□□□□□ -0.25
CTDNEP1-212ENST00000576613 SMC5Q8IY18 1101 aa13.46□□□□□ -0.25
CTDNEP1-212ENST00000576613 PIGSQ96S52 555 aa13.46□□□□□ -0.25
CTDNEP1-212ENST00000576613 GPR20Q99678 358 aa13.46□□□□□ -0.25
CTDNEP1-212ENST00000576613 RWDD1Q9H446 243 aaPredicted RBP13.46□□□□□ -0.25
CTDNEP1-212ENST00000576613 RIOX1Q9H6W3 641 aa13.46□□□□□ -0.25
CTDNEP1-212ENST00000576613 DOCK5Q9H7D0 1870 aa13.46□□□□□ -0.26
CTDNEP1-212ENST00000576613 ADGRA3Q8IWK6 1321 aa13.45□□□□□ -0.26
CTDNEP1-212ENST00000576613 NRCAMQ92823 1304 aa13.45□□□□□ -0.26
CTDNEP1-212ENST00000576613 ATG2AQ2TAZ0 1938 aa13.45□□□□□ -0.26
CTDNEP1-212ENST00000576613 C19orf67A6NJJ6 358 aa13.45□□□□□ -0.26
CTDNEP1-212ENST00000576613 MRPS9P82933 396 aaKnown RBP13.45□□□□□ -0.26
CTDNEP1-212ENST00000576613 GRM4Q14833 912 aa13.45□□□□□ -0.26
CTDNEP1-212ENST00000576613 TAF2Q6P1X5 1199 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms