RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 ARP10275 920 aa11.18□□□□□ -0.62
CLK3-220ENST00000567992 SYN1P17600 705 aa11.18□□□□□ -0.62
CLK3-220ENST00000567992 CIITAP33076 1130 aa11.18□□□□□ -0.62
CLK3-220ENST00000567992 FAAP100Q0VG06 881 aa11.18□□□□□ -0.62
CLK3-220ENST00000567992 ITGB3BPQ13352 177 aaPredicted RBP11.18□□□□□ -0.62
CLK3-220ENST00000567992 ITGA7Q13683 1181 aa11.18□□□□□ -0.62
CLK3-220ENST00000567992 NEDD9Q14511 834 aa11.18□□□□□ -0.62
CLK3-220ENST00000567992 BRDTQ58F21 947 aaPredicted RBP11.18□□□□□ -0.62
CLK3-220ENST00000567992 MCTP2Q6DN12 878 aa11.18□□□□□ -0.62
CLK3-220ENST00000567992 GALNT17Q6IS24 598 aa11.18□□□□□ -0.62
CLK3-220ENST00000567992 CYFIP1Q7L576 1253 aa11.18□□□□□ -0.62
CLK3-220ENST00000567992 NIPA1Q7RTP0 329 aa11.18□□□□□ -0.62
CLK3-220ENST00000567992 IL27Q8NEV9 243 aa11.18□□□□□ -0.62
CLK3-220ENST00000567992 OXER1Q8TDS5 423 aa11.18□□□□□ -0.62
CLK3-220ENST00000567992 PPP1R13LQ8WUF5 828 aa11.18□□□□□ -0.62
CLK3-220ENST00000567992 TNFRSF25Q93038 417 aa11.18□□□□□ -0.62
CLK3-220ENST00000567992 CDHR1Q96JP9 859 aa11.18□□□□□ -0.62
CLK3-220ENST00000567992 SPATA33Q96N06 139 aa11.18□□□□□ -0.62
CLK3-220ENST00000567992 GPR20Q99678 358 aa11.18□□□□□ -0.62
CLK3-220ENST00000567992 LLPHQ9BRT6 129 aaKnown RBP11.18□□□□□ -0.62
CLK3-220ENST00000567992 PRO3102Q9H379 93 aa11.18□□□□□ -0.62
CLK3-220ENST00000567992 AGO4Q9HCK5 861 aaKnown RBP11.18□□□□□ -0.62
CLK3-220ENST00000567992 PKD2L1Q9P0L9 805 aa11.18□□□□□ -0.62
CLK3-220ENST00000567992 TBX21Q9UL17 535 aa11.18□□□□□ -0.62
CLK3-220ENST00000567992 TANC1Q9C0D5 1861 aa11.17□□□□□ -0.62
CLK3-220ENST00000567992 TRIM43BA6NCK2 446 aa11.17□□□□□ -0.62
CLK3-220ENST00000567992 HAS3O00219 553 aa11.17□□□□□ -0.62
CLK3-220ENST00000567992 MAFGO15525 162 aa11.17□□□□□ -0.62
CLK3-220ENST00000567992 CLTBP09497 229 aa11.17□□□□□ -0.62
CLK3-220ENST00000567992 ITGB8P26012 769 aa11.17□□□□□ -0.62
CLK3-220ENST00000567992 DGKDQ16760 1214 aa11.17□□□□□ -0.62
CLK3-220ENST00000567992 EARS2Q5JPH6 523 aaKnown RBP11.17□□□□□ -0.62
CLK3-220ENST00000567992 WASF1Q92558 559 aa11.17□□□□□ -0.62
CLK3-220ENST00000567992 TRIM43Q96BQ3 446 aaPredicted RBP11.17□□□□□ -0.62
CLK3-220ENST00000567992 TMX3Q96JJ7 454 aa11.17□□□□□ -0.62
CLK3-220ENST00000567992 C16orf70Q9BSU1 422 aa11.17□□□□□ -0.62
CLK3-220ENST00000567992 MLXIPQ9HAP2 919 aa11.17□□□□□ -0.62
CLK3-220ENST00000567992 NFASCO94856 1347 aa11.16□□□□□ -0.62
CLK3-220ENST00000567992 MROH7Q68CQ1 1323 aa11.16□□□□□ -0.62
CLK3-220ENST00000567992 WDR81Q562E7 1941 aa11.16□□□□□ -0.62
CLK3-220ENST00000567992 FAM205CA6NFA0 338 aa11.16□□□□□ -0.62
CLK3-220ENST00000567992 KIAA0355O15063 1070 aa11.16□□□□□ -0.62
CLK3-220ENST00000567992 DHX15O43143 795 aaKnown RBP11.16□□□□□ -0.62
CLK3-220ENST00000567992 B4GALT4O60513 344 aa11.16□□□□□ -0.62
CLK3-220ENST00000567992 PPFIA4O75335 1185 aa11.16□□□□□ -0.62
CLK3-220ENST00000567992 LGALS2P05162 132 aa11.16□□□□□ -0.62
CLK3-220ENST00000567992 NBPF20Q3BBV1 942 aa11.16□□□□□ -0.62
CLK3-220ENST00000567992 NFRKBQ6P4R8 1299 aa11.16□□□□□ -0.62
CLK3-220ENST00000567992 GIMAP8Q8ND71 665 aaPredicted RBP11.16□□□□□ -0.62
CLK3-220ENST00000567992 TBCKQ8TEA7 893 aa11.16□□□□□ -0.62
CLK3-220ENST00000567992 VTI1AQ96AJ9 217 aa11.16□□□□□ -0.62
CLK3-220ENST00000567992 MBOAT7Q96N66 472 aa11.16□□□□□ -0.62
CLK3-220ENST00000567992 CTAGE1Q96RT6 745 aa11.16□□□□□ -0.62
CLK3-220ENST00000567992 GDF15Q99988 308 aa11.16□□□□□ -0.62
CLK3-220ENST00000567992 SEZ6LQ9BYH1 1024 aa11.16□□□□□ -0.62
CLK3-220ENST00000567992 TRPV6Q9H1D0 765 aa11.16□□□□□ -0.62
CLK3-220ENST00000567992 TRIOBPQ9H2D6 2365 aa11.15□□□□□ -0.62
CLK3-220ENST00000567992 CYP3A7-CYP3A51PA0A087WV96 503 aa11.15□□□□□ -0.62
CLK3-220ENST00000567992 GSTTP1A0A1W2PQM5 241 aa11.15□□□□□ -0.62
CLK3-220ENST00000567992 TDP2O95551 362 aa11.15□□□□□ -0.62
CLK3-220ENST00000567992 CCNE2O96020 404 aa11.15□□□□□ -0.62
CLK3-220ENST00000567992 MMP1P03956 469 aa11.15□□□□□ -0.62
CLK3-220ENST00000567992 XBP1P17861 261 aa11.15□□□□□ -0.62
CLK3-220ENST00000567992 CYP3A7P24462 503 aa11.15□□□□□ -0.62
CLK3-220ENST00000567992 MAGEA10P43363 369 aaPredicted RBP11.15□□□□□ -0.62
CLK3-220ENST00000567992 PSEN2P49810 448 aa11.15□□□□□ -0.62
CLK3-220ENST00000567992 USP11P51784 963 aa11.15□□□□□ -0.62
CLK3-220ENST00000567992 FOSBP53539 338 aa11.15□□□□□ -0.62
CLK3-220ENST00000567992 SETQ01105 290 aaPredicted RBP11.15□□□□□ -0.62
CLK3-220ENST00000567992 NR5A1Q13285 461 aa11.15□□□□□ -0.62
CLK3-220ENST00000567992 HIC1Q14526 733 aa11.15□□□□□ -0.62
CLK3-220ENST00000567992 MFSD10Q14728 455 aa11.15□□□□□ -0.62
CLK3-220ENST00000567992 KRT40Q6A162 431 aa11.15□□□□□ -0.62
CLK3-220ENST00000567992 KRT25Q7Z3Z0 450 aa11.15□□□□□ -0.62
CLK3-220ENST00000567992 SESTD1Q86VW0 696 aa11.15□□□□□ -0.62
CLK3-220ENST00000567992 PLA2G4DQ86XP0 818 aa11.15□□□□□ -0.62
CLK3-220ENST00000567992 TRIM50Q86XT4 487 aa11.15□□□□□ -0.62
CLK3-220ENST00000567992 JPH1Q9HDC5 661 aaPredicted RBP11.15□□□□□ -0.62
CLK3-220ENST00000567992 PRDM5Q9NQX1 630 aaPredicted RBP11.15□□□□□ -0.62
CLK3-220ENST00000567992 TRMT13Q9NUP7 481 aaKnown RBP11.15□□□□□ -0.62
CLK3-220ENST00000567992 TRIP12Q14669 1992 aaPredicted RBP11.14□□□□□ -0.63
CLK3-220ENST00000567992 DCDC2CA8MYV0 355 aa11.14□□□□□ -0.63
CLK3-220ENST00000567992 NOP56O00567 594 aaKnown RBP11.14□□□□□ -0.63
CLK3-220ENST00000567992 MSH4O15457 936 aa11.14□□□□□ -0.63
CLK3-220ENST00000567992 HOXC8P31273 242 aa11.14□□□□□ -0.63
CLK3-220ENST00000567992 KRT2P35908 639 aa11.14□□□□□ -0.63
CLK3-220ENST00000567992 TCF7P36402 384 aaPredicted RBP11.14□□□□□ -0.63
CLK3-220ENST00000567992 ZNF76P36508 570 aa11.14□□□□□ -0.63
CLK3-220ENST00000567992 MCM2P49736 904 aa11.14□□□□□ -0.63
CLK3-220ENST00000567992 HMGN5P82970 282 aaKnown RBP11.14□□□□□ -0.63
CLK3-220ENST00000567992 SP4Q02446 784 aa11.14□□□□□ -0.63
CLK3-220ENST00000567992 PTPN11Q06124 597 aaPredicted RBP11.14□□□□□ -0.63
CLK3-220ENST00000567992 NONOQ15233 471 aaKnown RBP eCLIP11.14□□□□□ -0.63
CLK3-220ENST00000567992 INF2Q27J81 1249 aa11.14□□□□□ -0.63
CLK3-220ENST00000567992 KIAA0753Q2KHM9 967 aa11.14□□□□□ -0.63
CLK3-220ENST00000567992 Q4G0T1 1027 aa11.14□□□□□ -0.63
CLK3-220ENST00000567992 PRR16Q569H4 304 aa11.14□□□□□ -0.63
CLK3-220ENST00000567992 CHRDL2Q6WN34 429 aa11.14□□□□□ -0.63
CLK3-220ENST00000567992 DIS3L2Q8IYB7 885 aaKnown RBP11.14□□□□□ -0.63
CLK3-220ENST00000567992 UIMC1Q96RL1 719 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms