RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 RTN1Q16799 776 aa12.45□□□□□ -0.42
VPS39-208ENST00000564994 WWC2Q6AWC2 1192 aa12.45□□□□□ -0.42
VPS39-208ENST00000564994 XRRA1Q6P2D8 792 aa12.45□□□□□ -0.42
VPS39-208ENST00000564994 SYNE3Q6ZMZ3 975 aa12.45□□□□□ -0.42
VPS39-208ENST00000564994 LRRC8DQ7L1W4 858 aa12.45□□□□□ -0.42
VPS39-208ENST00000564994 HEATR3Q7Z4Q2 680 aa12.45□□□□□ -0.42
VPS39-208ENST00000564994 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.45□□□□□ -0.42
VPS39-208ENST00000564994 GPR20Q99678 358 aa12.45□□□□□ -0.42
VPS39-208ENST00000564994 RBM28Q9NW13 759 aaKnown RBP12.45□□□□□ -0.42
VPS39-208ENST00000564994 MSRAQ9UJ68 235 aa12.45□□□□□ -0.42
VPS39-208ENST00000564994 KLF18A0A0U1RQI7 1052 aa12.44□□□□□ -0.42
VPS39-208ENST00000564994 H3BRB1 525 aa12.44□□□□□ -0.42
VPS39-208ENST00000564994 NBNO60934 754 aa12.44□□□□□ -0.42
VPS39-208ENST00000564994 ACTN1P12814 892 aa12.44□□□□□ -0.42
VPS39-208ENST00000564994 SELPP16109 830 aa12.44□□□□□ -0.42
VPS39-208ENST00000564994 ITGB5P18084 799 aa12.44□□□□□ -0.42
VPS39-208ENST00000564994 HOXC8P31273 242 aa12.44□□□□□ -0.42
VPS39-208ENST00000564994 PTK7Q13308 1070 aa12.44□□□□□ -0.42
VPS39-208ENST00000564994 MBTPS1Q14703 1052 aa12.44□□□□□ -0.42
VPS39-208ENST00000564994 TCTN1Q2MV58 587 aa12.44□□□□□ -0.42
VPS39-208ENST00000564994 TRIM50Q86XT4 487 aa12.44□□□□□ -0.42
VPS39-208ENST00000564994 CCDC155Q8N6L0 562 aa12.44□□□□□ -0.42
VPS39-208ENST00000564994 SENP7Q9BQF6 1050 aa12.44□□□□□ -0.42
VPS39-208ENST00000564994 FTOQ9C0B1 505 aaKnown RBP eCLIP12.44□□□□□ -0.42
VPS39-208ENST00000564994 PRDM12Q9H4Q4 367 aa12.44□□□□□ -0.42
VPS39-208ENST00000564994 TUT1Q9H6E5 874 aaKnown RBP12.44□□□□□ -0.42
VPS39-208ENST00000564994 PCDHA6Q9UN73 950 aa12.44□□□□□ -0.42
VPS39-208ENST00000564994 PCDHA8Q9Y5H6 950 aa12.44□□□□□ -0.42
VPS39-208ENST00000564994 SNX14Q9Y5W7 946 aa12.44□□□□□ -0.42
VPS39-208ENST00000564994 V9GY48 417 aaPredicted RBP12.44□□□□□ -0.42
VPS39-208ENST00000564994 MICAL3Q7RTP6 2002 aa12.44□□□□□ -0.42
VPS39-208ENST00000564994 GOLGA8AA7E2F4 631 aa12.43□□□□□ -0.42
VPS39-208ENST00000564994 GOLGA8BA8MQT2 603 aa12.43□□□□□ -0.42
VPS39-208ENST00000564994 DLL1O00548 723 aa12.43□□□□□ -0.42
VPS39-208ENST00000564994 NOP56O00567 594 aaKnown RBP12.43□□□□□ -0.42
VPS39-208ENST00000564994 CXCL10P02778 98 aa12.43□□□□□ -0.42
VPS39-208ENST00000564994 KCNA2P16389 499 aa12.43□□□□□ -0.42
VPS39-208ENST00000564994 SP4Q02446 784 aa12.43□□□□□ -0.42
VPS39-208ENST00000564994 ADGRE1Q14246 886 aa12.43□□□□□ -0.42
VPS39-208ENST00000564994 ZNF618Q5T7W0 954 aa12.43□□□□□ -0.42
VPS39-208ENST00000564994 NLRX1Q86UT6 975 aa12.43□□□□□ -0.42
VPS39-208ENST00000564994 SERINC5Q86VE9 423 aa12.43□□□□□ -0.42
VPS39-208ENST00000564994 USP38Q8NB14 1042 aa12.43□□□□□ -0.42
VPS39-208ENST00000564994 GPRASP2Q96D09 838 aa12.43□□□□□ -0.42
VPS39-208ENST00000564994 RNPEPQ9H4A4 650 aa12.43□□□□□ -0.42
VPS39-208ENST00000564994 SLC28A3Q9HAS3 691 aa12.43□□□□□ -0.42
VPS39-208ENST00000564994 PCDHA11Q9Y5I1 949 aa12.43□□□□□ -0.42
VPS39-208ENST00000564994 UBIAD1Q9Y5Z9 338 aa12.43□□□□□ -0.42
VPS39-208ENST00000564994 SIP14410 1827 aa12.42□□□□□ -0.42
VPS39-208ENST00000564994 SPDYE3A6NKU9 549 aa12.42□□□□□ -0.42
VPS39-208ENST00000564994 STXBP3O00186 592 aa12.42□□□□□ -0.42
VPS39-208ENST00000564994 TREHO43280 583 aa12.42□□□□□ -0.42
VPS39-208ENST00000564994 HMGB1P09429 215 aaKnown RBP12.42□□□□□ -0.42
VPS39-208ENST00000564994 SMIM10L2AP0DMW4 78 aa12.42□□□□□ -0.42
VPS39-208ENST00000564994 SMIM10L2BP0DMW5 78 aa12.42□□□□□ -0.42
VPS39-208ENST00000564994 ADD1P35611 737 aaKnown RBP12.42□□□□□ -0.42
VPS39-208ENST00000564994 NAPAP54920 295 aa12.42□□□□□ -0.42
VPS39-208ENST00000564994 APOBRQ0VD83 1088 aa12.42□□□□□ -0.42
VPS39-208ENST00000564994 UTP14CQ5TAP6 766 aaKnown RBP12.42□□□□□ -0.42
VPS39-208ENST00000564994 Q6ZUG5 572 aa12.42□□□□□ -0.42
VPS39-208ENST00000564994 PGBD1Q96JS3 809 aa12.42□□□□□ -0.42
VPS39-208ENST00000564994 JAKMIP1Q96N16 626 aaKnown RBP12.42□□□□□ -0.42
VPS39-208ENST00000564994 SLC9A7Q96T83 725 aa12.42□□□□□ -0.42
VPS39-208ENST00000564994 USP26Q9BXU7 913 aa12.42□□□□□ -0.42
VPS39-208ENST00000564994 RIC8AQ9NPQ8 531 aa12.42□□□□□ -0.42
VPS39-208ENST00000564994 PRRC2BQ5JSZ5 2229 aaKnown RBP12.42□□□□□ -0.42
VPS39-208ENST00000564994 TTC28Q96AY4 2481 aa12.42□□□□□ -0.42
VPS39-208ENST00000564994 GSTTP1A0A1W2PQM5 241 aa12.41□□□□□ -0.42
VPS39-208ENST00000564994 C17orf102A2RUQ5 167 aa12.41□□□□□ -0.42
VPS39-208ENST00000564994 BAIAP3O94812 1187 aa12.41□□□□□ -0.42
VPS39-208ENST00000564994 ARHGEF15O94989 841 aa12.41□□□□□ -0.42
VPS39-208ENST00000564994 CA3P07451 260 aa12.41□□□□□ -0.42
VPS39-208ENST00000564994 TCF7P36402 384 aaPredicted RBP12.41□□□□□ -0.42
VPS39-208ENST00000564994 RCAN1P53805 252 aa12.41□□□□□ -0.42
VPS39-208ENST00000564994 WDR5P61964 334 aaKnown RBP12.41□□□□□ -0.42
VPS39-208ENST00000564994 ADAM17P78536 824 aa12.41□□□□□ -0.42
VPS39-208ENST00000564994 MTMR1Q13613 665 aa12.41□□□□□ -0.42
VPS39-208ENST00000564994 PPP2R2DQ66LE6 453 aa12.41□□□□□ -0.42
VPS39-208ENST00000564994 PPP1R18Q6NYC8 613 aa12.41□□□□□ -0.42
VPS39-208ENST00000564994 CNKSR3Q6P9H4 555 aa12.41□□□□□ -0.42
VPS39-208ENST00000564994 TMCO2Q7Z6W1 182 aaPredicted RBP12.41□□□□□ -0.42
VPS39-208ENST00000564994 HERC6Q8IVU3 1022 aa12.41□□□□□ -0.42
VPS39-208ENST00000564994 CYP2W1Q8TAV3 490 aa12.41□□□□□ -0.42
VPS39-208ENST00000564994 PHOSPHO2Q8TCD6 241 aa12.41□□□□□ -0.42
VPS39-208ENST00000564994 BRF1Q92994 677 aa12.41□□□□□ -0.42
VPS39-208ENST00000564994 ATP6V0A1Q93050 837 aa12.41□□□□□ -0.42
VPS39-208ENST00000564994 OSBPL7Q9BZF2 842 aa12.41□□□□□ -0.42
VPS39-208ENST00000564994 JADE2Q9NQC1 790 aa12.41□□□□□ -0.42
VPS39-208ENST00000564994 SETD4Q9NVD3 440 aa12.41□□□□□ -0.42
VPS39-208ENST00000564994 TMEM260Q9NX78 707 aa12.41□□□□□ -0.42
VPS39-208ENST00000564994 BARHL2Q9NY43 387 aa12.41□□□□□ -0.42
VPS39-208ENST00000564994 PKD2L1Q9P0L9 805 aa12.41□□□□□ -0.42
VPS39-208ENST00000564994 SMCO2A6NFE2 343 aa12.4□□□□□ -0.42
VPS39-208ENST00000564994 ADAMTS3O15072 1205 aa12.4□□□□□ -0.42
VPS39-208ENST00000564994 PARNO95453 639 aaKnown RBP12.4□□□□□ -0.42
VPS39-208ENST00000564994 RPS6KB1P23443 525 aa12.4□□□□□ -0.42
VPS39-208ENST00000564994 THPOP40225 353 aa12.4□□□□□ -0.42
VPS39-208ENST00000564994 CLK2P49760 499 aaKnown RBP12.4□□□□□ -0.42
VPS39-208ENST00000564994 METAP2P50579 478 aaKnown RBP eCLIP12.4□□□□□ -0.42
VPS39-208ENST00000564994 ADCY7P51828 1080 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms