RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 THPOP40225 353 aa12.15□□□□□ -0.46
SF3B3-204ENST00000563739 CACNB1Q02641 598 aaPredicted RBP12.15□□□□□ -0.46
SF3B3-204ENST00000563739 SEMA3FQ13275 785 aa12.15□□□□□ -0.46
SF3B3-204ENST00000563739 CSPP1Q1MSJ5 1256 aa12.15□□□□□ -0.46
SF3B3-204ENST00000563739 RRP12Q5JTH9 1297 aaKnown RBP12.15□□□□□ -0.46
SF3B3-204ENST00000563739 CELF3Q5SZQ8 465 aaKnown RBP12.15□□□□□ -0.46
SF3B3-204ENST00000563739 ADGRF4Q8IZF3 695 aa12.15□□□□□ -0.46
SF3B3-204ENST00000563739 NSUN6Q8TEA1 469 aaKnown RBP12.15□□□□□ -0.46
SF3B3-204ENST00000563739 GPATCH3Q96I76 525 aa12.15□□□□□ -0.46
SF3B3-204ENST00000563739 ZFP91Q96JP5 570 aaPredicted RBP12.15□□□□□ -0.46
SF3B3-204ENST00000563739 IWS1Q96ST2 819 aa12.15□□□□□ -0.46
SF3B3-204ENST00000563739 PDCD2LQ9BRP1 358 aa12.15□□□□□ -0.46
SF3B3-204ENST00000563739 ZKSCAN3Q9BRR0 538 aa12.15□□□□□ -0.46
SF3B3-204ENST00000563739 PKD1L2Q7Z442 2459 aa12.15□□□□□ -0.46
SF3B3-204ENST00000563739 EMSYQ7Z589 1322 aa12.14□□□□□ -0.47
SF3B3-204ENST00000563739 BAZ2BQ9UIF8 2168 aaKnown RBP12.14□□□□□ -0.47
SF3B3-204ENST00000563739 GLP2RO95838 553 aa12.14□□□□□ -0.47
SF3B3-204ENST00000563739 CTSHP09668 335 aa12.14□□□□□ -0.47
SF3B3-204ENST00000563739 SMIM10L2AP0DMW4 78 aa12.14□□□□□ -0.47
SF3B3-204ENST00000563739 SMIM10L2BP0DMW5 78 aa12.14□□□□□ -0.47
SF3B3-204ENST00000563739 HSPD1P10809 573 aaKnown RBP12.14□□□□□ -0.47
SF3B3-204ENST00000563739 MX1P20591 662 aa12.14□□□□□ -0.47
SF3B3-204ENST00000563739 STXBP2Q15833 593 aa12.14□□□□□ -0.47
SF3B3-204ENST00000563739 PTPROQ16827 1216 aa12.14□□□□□ -0.47
SF3B3-204ENST00000563739 BMP8AQ7Z5Y6 402 aa12.14□□□□□ -0.47
SF3B3-204ENST00000563739 ADGRD2Q7Z7M1 963 aa12.14□□□□□ -0.47
SF3B3-204ENST00000563739 CRIPAKQ8N1N5 446 aa12.14□□□□□ -0.47
SF3B3-204ENST00000563739 CLP1Q92989 425 aaKnown RBP12.14□□□□□ -0.47
SF3B3-204ENST00000563739 KATNAL1Q9BW62 490 aa12.14□□□□□ -0.47
SF3B3-204ENST00000563739 MAF1Q9H063 256 aa12.14□□□□□ -0.47
SF3B3-204ENST00000563739 JMJD4Q9H9V9 463 aa12.14□□□□□ -0.47
SF3B3-204ENST00000563739 CLEC1BQ9P126 229 aa12.14□□□□□ -0.47
SF3B3-204ENST00000563739 MRVI1Q9Y6F6 885 aa12.14□□□□□ -0.47
SF3B3-204ENST00000563739 CACNA1BQ00975 2339 aa12.14□□□□□ -0.47
SF3B3-204ENST00000563739 BAHCC1Q9P281 2608 aa12.13□□□□□ -0.47
SF3B3-204ENST00000563739 EIF3JO75822 258 aaKnown RBP12.13□□□□□ -0.47
SF3B3-204ENST00000563739 UPP2O95045 317 aa12.13□□□□□ -0.47
SF3B3-204ENST00000563739 GGPS1O95749 300 aa12.13□□□□□ -0.47
SF3B3-204ENST00000563739 LGALS2P05162 132 aa12.13□□□□□ -0.47
SF3B3-204ENST00000563739 VCPP55072 806 aaKnown RBP12.13□□□□□ -0.47
SF3B3-204ENST00000563739 MGAT3Q09327 533 aa12.13□□□□□ -0.47
SF3B3-204ENST00000563739 SMAD4Q13485 552 aaKnown RBP12.13□□□□□ -0.47
SF3B3-204ENST00000563739 LAMC2Q13753 1193 aa12.13□□□□□ -0.47
SF3B3-204ENST00000563739 FAM26DQ5JW98 314 aa12.13□□□□□ -0.47
SF3B3-204ENST00000563739 GPATCH4Q5T3I0 446 aaKnown RBP12.13□□□□□ -0.47
SF3B3-204ENST00000563739 TRIM50Q86XT4 487 aa12.13□□□□□ -0.47
SF3B3-204ENST00000563739 EDAQ92838 391 aa12.13□□□□□ -0.47
SF3B3-204ENST00000563739 ZNF689Q96CS4 500 aaPredicted RBP12.13□□□□□ -0.47
SF3B3-204ENST00000563739 MTMR8Q96EF0 704 aa12.13□□□□□ -0.47
SF3B3-204ENST00000563739 TTC14Q96N46 770 aa12.13□□□□□ -0.47
SF3B3-204ENST00000563739 YME1L1Q96TA2 773 aa12.13□□□□□ -0.47
SF3B3-204ENST00000563739 RNPEPQ9H4A4 650 aa12.13□□□□□ -0.47
SF3B3-204ENST00000563739 CTNNA3Q9UI47 895 aa12.13□□□□□ -0.47
SF3B3-204ENST00000563739 PNMA2Q9UL42 364 aa12.13□□□□□ -0.47
SF3B3-204ENST00000563739 FRMPD4Q14CM0 1322 aa12.12□□□□□ -0.47
SF3B3-204ENST00000563739 ADGRA3Q8IWK6 1321 aa12.12□□□□□ -0.47
SF3B3-204ENST00000563739 FNDC1Q4ZHG4 1894 aaPredicted RBP12.12□□□□□ -0.47
SF3B3-204ENST00000563739 LOC730098B7Z3J9 87 aa12.12□□□□□ -0.47
SF3B3-204ENST00000563739 EYA4O95677 639 aa12.12□□□□□ -0.47
SF3B3-204ENST00000563739 MMP1P03956 469 aa12.12□□□□□ -0.47
SF3B3-204ENST00000563739 CTNNB1P35222 781 aa12.12□□□□□ -0.47
SF3B3-204ENST00000563739 NMIQ13287 307 aaPredicted RBP12.12□□□□□ -0.47
SF3B3-204ENST00000563739 ADAM15Q13444 863 aa12.12□□□□□ -0.47
SF3B3-204ENST00000563739 CBX2Q14781 532 aaPredicted RBP12.12□□□□□ -0.47
SF3B3-204ENST00000563739 PGM5Q15124 567 aa12.12□□□□□ -0.47
SF3B3-204ENST00000563739 STOX1Q6ZVD7 989 aa12.12□□□□□ -0.47
SF3B3-204ENST00000563739 DHX37Q8IY37 1157 aaKnown RBP12.12□□□□□ -0.47
SF3B3-204ENST00000563739 STAG2Q8N3U4 1231 aa12.12□□□□□ -0.47
SF3B3-204ENST00000563739 PNMA1Q8ND90 353 aa12.12□□□□□ -0.47
SF3B3-204ENST00000563739 ASIC4Q96FT7 647 aa12.12□□□□□ -0.47
SF3B3-204ENST00000563739 CRBNQ96SW2 442 aa12.12□□□□□ -0.47
SF3B3-204ENST00000563739 MPHOSPH6Q99547 160 aaKnown RBP12.12□□□□□ -0.47
SF3B3-204ENST00000563739 IFIH1Q9BYX4 1025 aaKnown RBP12.12□□□□□ -0.47
SF3B3-204ENST00000563739 EHMT1Q9H9B1 1298 aa12.12□□□□□ -0.47
SF3B3-204ENST00000563739 HELLSQ9NRZ9 838 aa12.12□□□□□ -0.47
SF3B3-204ENST00000563739 TOMM22Q9NS69 142 aa12.12□□□□□ -0.47
SF3B3-204ENST00000563739 FAM86C1Q9NVL1 165 aa12.12□□□□□ -0.47
SF3B3-204ENST00000563739 PCDHGC5Q9Y5F6 944 aa12.12□□□□□ -0.47
SF3B3-204ENST00000563739 GVINP1Q7Z2Y8 2422 aa12.11□□□□□ -0.47
SF3B3-204ENST00000563739 C17orf102A2RUQ5 167 aa12.11□□□□□ -0.47
SF3B3-204ENST00000563739 TMEM221A6NGB7 291 aa12.11□□□□□ -0.47
SF3B3-204ENST00000563739 M0R296 226 aa12.11□□□□□ -0.47
SF3B3-204ENST00000563739 PPFIA4O75335 1185 aa12.11□□□□□ -0.47
SF3B3-204ENST00000563739 CHRNA1P02708 482 aa12.11□□□□□ -0.47
SF3B3-204ENST00000563739 BMPR1AP36894 532 aa12.11□□□□□ -0.47
SF3B3-204ENST00000563739 MRPS9P82933 396 aaKnown RBP12.11□□□□□ -0.47
SF3B3-204ENST00000563739 ARHGEF16Q5VV41 709 aa12.11□□□□□ -0.47
SF3B3-204ENST00000563739 RUFY4Q6ZNE9 571 aa12.11□□□□□ -0.47
SF3B3-204ENST00000563739 TRIM67Q6ZTA4 783 aa12.11□□□□□ -0.47
SF3B3-204ENST00000563739 EP400NLQ6ZTU2 488 aa12.11□□□□□ -0.47
SF3B3-204ENST00000563739 VSIG10LQ86VR7 867 aa12.11□□□□□ -0.47
SF3B3-204ENST00000563739 ENAHQ8N8S7 591 aaPredicted RBP12.11□□□□□ -0.47
SF3B3-204ENST00000563739 SMRP1Q8NCR6 262 aa12.11□□□□□ -0.47
SF3B3-204ENST00000563739 VN1R2Q8NFZ6 395 aa12.11□□□□□ -0.47
SF3B3-204ENST00000563739 SEPT8Q92599 483 aa12.11□□□□□ -0.47
SF3B3-204ENST00000563739 ATP6V0A1Q93050 837 aa12.11□□□□□ -0.47
SF3B3-204ENST00000563739 SPATA33Q96N06 139 aa12.11□□□□□ -0.47
SF3B3-204ENST00000563739 RCAN3Q9UKA8 241 aa12.11□□□□□ -0.47
SF3B3-204ENST00000563739 DNAH14Q0VDD8 3507 aa12.11□□□□□ -0.47
SF3B3-204ENST00000563739 ZFHX4Q86UP3 3567 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms