RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 RNPEPQ9H4A4 650 aa18.17■□□□□ 0.5
CLK3-211ENST00000563297 DOCK5Q9H7D0 1870 aa18.17■□□□□ 0.5
CLK3-211ENST00000563297 TCF20Q9UGU0 1960 aaKnown RBP18.17■□□□□ 0.5
CLK3-211ENST00000563297 MUC3AQ02505 3323 aa18.16■□□□□ 0.5
CLK3-211ENST00000563297 C17orf102A2RUQ5 167 aa18.16■□□□□ 0.5
CLK3-211ENST00000563297 TNFRSF10AO00220 468 aa18.16■□□□□ 0.5
CLK3-211ENST00000563297 GTPBP6O43824 516 aaPredicted RBP18.16■□□□□ 0.5
CLK3-211ENST00000563297 PLEKHA8P1O95397 391 aa18.16■□□□□ 0.5
CLK3-211ENST00000563297 LGALS2P05162 132 aa18.16■□□□□ 0.5
CLK3-211ENST00000563297 HOXC8P31273 242 aa18.16■□□□□ 0.5
CLK3-211ENST00000563297 NEDD9Q14511 834 aa18.16■□□□□ 0.5
CLK3-211ENST00000563297 METTL7BQ6UX53 244 aa18.16■□□□□ 0.5
CLK3-211ENST00000563297 SMARCC2Q8TAQ2 1214 aa18.16■□□□□ 0.5
CLK3-211ENST00000563297 TMEM87BQ96K49 555 aa18.16■□□□□ 0.5
CLK3-211ENST00000563297 LZTS2Q9BRK4 669 aa18.16■□□□□ 0.5
CLK3-211ENST00000563297 USP26Q9BXU7 913 aa18.16■□□□□ 0.5
CLK3-211ENST00000563297 PIK3CDO00329 1044 aa18.15■□□□□ 0.5
CLK3-211ENST00000563297 NOP56O00567 594 aaKnown RBP18.15■□□□□ 0.5
CLK3-211ENST00000563297 SH2B2O14492 632 aaPredicted RBP18.15■□□□□ 0.5
CLK3-211ENST00000563297 SLC27A2O14975 620 aa18.15■□□□□ 0.5
CLK3-211ENST00000563297 TREHO43280 583 aa18.15■□□□□ 0.5
CLK3-211ENST00000563297 FIBPO43427 364 aa18.15■□□□□ 0.5
CLK3-211ENST00000563297 EFCAB14O75071 495 aa18.15■□□□□ 0.5
CLK3-211ENST00000563297 LGR5O75473 907 aa18.15■□□□□ 0.5
CLK3-211ENST00000563297 GJB5O95377 273 aa18.15■□□□□ 0.5
CLK3-211ENST00000563297 SMIM10L2AP0DMW4 78 aa18.15■□□□□ 0.5
CLK3-211ENST00000563297 SMIM10L2BP0DMW5 78 aa18.15■□□□□ 0.5
CLK3-211ENST00000563297 GNAQP50148 359 aa18.15■□□□□ 0.5
CLK3-211ENST00000563297 NECTIN1Q15223 517 aa18.15■□□□□ 0.5
CLK3-211ENST00000563297 PCNX4Q63HM2 1172 aa18.15■□□□□ 0.5
CLK3-211ENST00000563297 NFXL1Q6ZNB6 911 aa18.15■□□□□ 0.5
CLK3-211ENST00000563297 CMTR1Q8N1G2 835 aaKnown RBP18.15■□□□□ 0.5
CLK3-211ENST00000563297 CUL5Q93034 780 aa18.15■□□□□ 0.5
CLK3-211ENST00000563297 ATP6V0A1Q93050 837 aa18.15■□□□□ 0.5
CLK3-211ENST00000563297 RAD9AQ99638 391 aa18.15■□□□□ 0.5
CLK3-211ENST00000563297 GPR20Q99678 358 aa18.15■□□□□ 0.5
CLK3-211ENST00000563297 ESYT1Q9BSJ8 1104 aa18.15■□□□□ 0.5
CLK3-211ENST00000563297 SEC63Q9UGP8 760 aaKnown RBP18.15■□□□□ 0.5
CLK3-211ENST00000563297 TELO2Q9Y4R8 837 aa18.15■□□□□ 0.5
CLK3-211ENST00000563297 KAT6AQ92794 2004 aa18.15■□□□□ 0.5
CLK3-211ENST00000563297 CCDC69A6NI79 296 aa18.14■□□□□ 0.49
CLK3-211ENST00000563297 RSPH10B2B2RC85 870 aa18.14■□□□□ 0.49
CLK3-211ENST00000563297 LPXNO60711 386 aa18.14■□□□□ 0.49
CLK3-211ENST00000563297 RSPH10BP0C881 870 aa18.14■□□□□ 0.49
CLK3-211ENST00000563297 RXRAP19793 462 aa18.14■□□□□ 0.49
CLK3-211ENST00000563297 THPOP40225 353 aa18.14■□□□□ 0.49
CLK3-211ENST00000563297 LIFRP42702 1097 aa18.14■□□□□ 0.49
CLK3-211ENST00000563297 GRB10Q13322 594 aa18.14■□□□□ 0.49
CLK3-211ENST00000563297 CREB3L3Q68CJ9 461 aa18.14■□□□□ 0.49
CLK3-211ENST00000563297 XRRA1Q6P2D8 792 aa18.14■□□□□ 0.49
CLK3-211ENST00000563297 DBF4BQ8NFT6 615 aa18.14■□□□□ 0.49
CLK3-211ENST00000563297 ADAMTS19Q8TE59 1207 aa18.14■□□□□ 0.49
CLK3-211ENST00000563297 SENP7Q9BQF6 1050 aa18.14■□□□□ 0.49
CLK3-211ENST00000563297 BMP1P13497 986 aa18.13■□□□□ 0.49
CLK3-211ENST00000563297 TFF2Q03403 129 aa18.13■□□□□ 0.49
CLK3-211ENST00000563297 SKIV2LQ15477 1246 aaKnown RBP18.13■□□□□ 0.49
CLK3-211ENST00000563297 LIN28BQ6ZN17 250 aaKnown RBP eCLIP18.13■□□□□ 0.495e-12■■□□□ 14.3
CLK3-211ENST00000563297 PSTPIP2Q9H939 334 aa18.13■□□□□ 0.49
CLK3-211ENST00000563297 SETD4Q9NVD3 440 aa18.13■□□□□ 0.49
CLK3-211ENST00000563297 EMSYQ7Z589 1322 aa18.13■□□□□ 0.49
CLK3-211ENST00000563297 CALM1P0DP23 149 aa18.12■□□□□ 0.49
CLK3-211ENST00000563297 CALM2P0DP24 149 aa18.12■□□□□ 0.49
CLK3-211ENST00000563297 CALM3P0DP25 149 aa18.12■□□□□ 0.49
CLK3-211ENST00000563297 ADAM17P78536 824 aa18.12■□□□□ 0.49
CLK3-211ENST00000563297 MKRN4PQ13434 485 aaPredicted RBP18.12■□□□□ 0.49
CLK3-211ENST00000563297 PLEKHG4Q58EX7 1191 aa18.12■□□□□ 0.49
CLK3-211ENST00000563297 FAM117BQ6P1L5 589 aa18.12■□□□□ 0.49
CLK3-211ENST00000563297 NLRX1Q86UT6 975 aa18.12■□□□□ 0.49
CLK3-211ENST00000563297 TRIM50Q86XT4 487 aa18.12■□□□□ 0.49
CLK3-211ENST00000563297 RAB11FIP4Q86YS3 637 aa18.12■□□□□ 0.49
CLK3-211ENST00000563297 UHRF1Q96T88 793 aaPredicted RBP18.12■□□□□ 0.49
CLK3-211ENST00000563297 LRRC2Q9BYS8 371 aa18.12■□□□□ 0.49
CLK3-211ENST00000563297 OSBPL7Q9BZF2 842 aa18.12■□□□□ 0.49
CLK3-211ENST00000563297 MICAL3Q7RTP6 2002 aa18.11■□□□□ 0.49
CLK3-211ENST00000563297 XIRP2A4UGR9 3374 aa18.11■□□□□ 0.49
CLK3-211ENST00000563297 hCG_1642624A0A1W2PR95 340 aa18.11■□□□□ 0.49
CLK3-211ENST00000563297 ATP9AO75110 1047 aa18.11■□□□□ 0.49
CLK3-211ENST00000563297 GNAT1P11488 350 aa18.11■□□□□ 0.49
CLK3-211ENST00000563297 ERVK-21P61565 698 aa18.11■□□□□ 0.49
CLK3-211ENST00000563297 UTP14CQ5TAP6 766 aaKnown RBP18.11■□□□□ 0.49
CLK3-211ENST00000563297 CCDC82Q8N4S0 544 aa18.11■□□□□ 0.49
CLK3-211ENST00000563297 FANCBQ8NB91 859 aa18.11■□□□□ 0.49
CLK3-211ENST00000563297 IL27Q8NEV9 243 aa18.11■□□□□ 0.49
CLK3-211ENST00000563297 SUGCTQ9HAC7 445 aa18.11■□□□□ 0.49
CLK3-211ENST00000563297 SLC12A7Q9Y666 1083 aa18.11■□□□□ 0.49
CLK3-211ENST00000563297 LINC01553A4QN01 128 aa18.1■□□□□ 0.49
CLK3-211ENST00000563297 SP4Q02446 784 aa18.1■□□□□ 0.49
CLK3-211ENST00000563297 AAK1Q2M2I8 961 aa18.1■□□□□ 0.49
CLK3-211ENST00000563297 SGMS1Q86VZ5 419 aa18.1■□□□□ 0.49
CLK3-211ENST00000563297 GIMAP8Q8ND71 665 aaPredicted RBP18.1■□□□□ 0.49
CLK3-211ENST00000563297 GPRASP2Q96D09 838 aa18.1■□□□□ 0.49
CLK3-211ENST00000563297 TGS1Q96RS0 853 aaKnown RBP18.1■□□□□ 0.49
CLK3-211ENST00000563297 ANO2Q9NQ90 1003 aa18.1■□□□□ 0.49
CLK3-211ENST00000563297 LMCD1Q9NZU5 365 aa18.1■□□□□ 0.49
CLK3-211ENST00000563297 INSL6Q9Y581 213 aa18.1■□□□□ 0.49
CLK3-211ENST00000563297 BRWD1Q9NSI6 2320 aa18.1■□□□□ 0.49
CLK3-211ENST00000563297 CAND2O75155 1236 aa18.09■□□□□ 0.49
CLK3-211ENST00000563297 AMHP03971 560 aa18.09■□□□□ 0.49
CLK3-211ENST00000563297 KCNA2P16389 499 aa18.09■□□□□ 0.49
CLK3-211ENST00000563297 ITGB5P18084 799 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms