RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 MYH11P35749 1972 aa11.13□□□□□ -0.63
CLK3-208ENST00000562626 H3BQV1 296 aa11.12□□□□□ -0.63
CLK3-208ENST00000562626 DDX39AO00148 427 aaKnown RBP11.12□□□□□ -0.63
CLK3-208ENST00000562626 MSCO60682 206 aa11.12□□□□□ -0.63
CLK3-208ENST00000562626 GH1P01241 217 aa11.12□□□□□ -0.63
CLK3-208ENST00000562626 MMP3P08254 477 aa11.12□□□□□ -0.63
CLK3-208ENST00000562626 COL6A1P12109 1028 aa11.12□□□□□ -0.63
CLK3-208ENST00000562626 CST5P28325 142 aaPredicted RBP11.12□□□□□ -0.63
CLK3-208ENST00000562626 SP4Q02446 784 aa11.12□□□□□ -0.63
CLK3-208ENST00000562626 RESTQ13127 1097 aa11.12□□□□□ -0.63
CLK3-208ENST00000562626 SAFBQ15424 915 aaKnown RBP eCLIP11.12□□□□□ -0.63
CLK3-208ENST00000562626 KCNA10Q16322 511 aa11.12□□□□□ -0.63
CLK3-208ENST00000562626 FSCN1Q16658 493 aaKnown RBP11.12□□□□□ -0.63
CLK3-208ENST00000562626 GNPTABQ3T906 1256 aa11.12□□□□□ -0.63
CLK3-208ENST00000562626 Q4G0T1 1027 aa11.12□□□□□ -0.63
CLK3-208ENST00000562626 MCTP2Q6DN12 878 aa11.12□□□□□ -0.63
CLK3-208ENST00000562626 NIPA1Q7RTP0 329 aa11.12□□□□□ -0.63
CLK3-208ENST00000562626 NLRX1Q86UT6 975 aa11.12□□□□□ -0.63
CLK3-208ENST00000562626 ETNPPLQ8TBG4 499 aa11.12□□□□□ -0.63
CLK3-208ENST00000562626 HAS1Q92839 578 aa11.12□□□□□ -0.63
CLK3-208ENST00000562626 FERMT2Q96AC1 680 aa11.12□□□□□ -0.63
CLK3-208ENST00000562626 PAWRQ96IZ0 340 aaKnown RBP11.12□□□□□ -0.63
CLK3-208ENST00000562626 TMEM60Q9H2L4 133 aa11.12□□□□□ -0.63
CLK3-208ENST00000562626 BRMS1Q9HCU9 246 aa11.12□□□□□ -0.63
CLK3-208ENST00000562626 ZDHHC9Q9Y397 364 aa11.12□□□□□ -0.63
CLK3-208ENST00000562626 GRIN2DO15399 1336 aa11.11□□□□□ -0.63
CLK3-208ENST00000562626 GSTTP1A0A1W2PQM5 241 aa11.11□□□□□ -0.63
CLK3-208ENST00000562626 A6NJR5 290 aa11.11□□□□□ -0.63
CLK3-208ENST00000562626 DNM1LO00429 736 aa11.11□□□□□ -0.63
CLK3-208ENST00000562626 STX6O43752 255 aa11.11□□□□□ -0.63
CLK3-208ENST00000562626 CCNT1O60563 726 aaKnown RBP11.11□□□□□ -0.63
CLK3-208ENST00000562626 ASGR1P07306 291 aa11.11□□□□□ -0.63
CLK3-208ENST00000562626 ZNF286BP0CG31 522 aa11.11□□□□□ -0.63
CLK3-208ENST00000562626 TGFB3P10600 412 aa11.11□□□□□ -0.63
CLK3-208ENST00000562626 GNASQ5JWF2 1037 aa11.11□□□□□ -0.63
CLK3-208ENST00000562626 FOXD4L5Q5VV16 416 aaPredicted RBP11.11□□□□□ -0.63
CLK3-208ENST00000562626 CXCL17Q6UXB2 119 aa11.11□□□□□ -0.63
CLK3-208ENST00000562626 TRIM50Q86XT4 487 aa11.11□□□□□ -0.63
CLK3-208ENST00000562626 DHX37Q8IY37 1157 aaKnown RBP11.11□□□□□ -0.63
CLK3-208ENST00000562626 FOXD4L4Q8WXT5 416 aaPredicted RBP11.11□□□□□ -0.63
CLK3-208ENST00000562626 KAT2BQ92831 832 aa11.11□□□□□ -0.63
CLK3-208ENST00000562626 SLC5A5Q92911 643 aa11.11□□□□□ -0.63
CLK3-208ENST00000562626 EMID1Q96A84 441 aaPredicted RBP11.11□□□□□ -0.63
CLK3-208ENST00000562626 CHAMP1Q96JM3 812 aa11.11□□□□□ -0.63
CLK3-208ENST00000562626 PCYT2Q99447 389 aa11.11□□□□□ -0.63
CLK3-208ENST00000562626 GPR20Q99678 358 aa11.11□□□□□ -0.63
CLK3-208ENST00000562626 FTOQ9C0B1 505 aaKnown RBP eCLIP11.11□□□□□ -0.63
CLK3-208ENST00000562626 AP5M1Q9H0R1 490 aa11.11□□□□□ -0.63
CLK3-208ENST00000562626 KCNMB3Q9NPA1 279 aa11.11□□□□□ -0.63
CLK3-208ENST00000562626 DDX25Q9UHL0 483 aaKnown RBP11.11□□□□□ -0.63
CLK3-208ENST00000562626 PHF24Q9UPV7 400 aa11.11□□□□□ -0.63
CLK3-208ENST00000562626 Q9Y3F1 56 aa11.11□□□□□ -0.63
CLK3-208ENST00000562626 KIF3AQ9Y496 699 aa11.11□□□□□ -0.63
CLK3-208ENST00000562626 PCDHB6Q9Y5E3 794 aa11.11□□□□□ -0.63
CLK3-208ENST00000562626 A0A1W2PQ45 241 aaPredicted RBP11.1□□□□□ -0.63
CLK3-208ENST00000562626 A0A1W2PQY0 241 aa11.1□□□□□ -0.63
CLK3-208ENST00000562626 IPO5O00410 1097 aaKnown RBP11.1□□□□□ -0.63
CLK3-208ENST00000562626 NKRFO15226 690 aaKnown RBP eCLIP11.1□□□□□ -0.63
CLK3-208ENST00000562626 MYL3P08590 195 aa11.1□□□□□ -0.63
CLK3-208ENST00000562626 HOXD8P13378 290 aaPredicted RBP11.1□□□□□ -0.63
CLK3-208ENST00000562626 ACLYP53396 1101 aa11.1□□□□□ -0.63
CLK3-208ENST00000562626 PSMC6P62333 389 aa11.1□□□□□ -0.63
CLK3-208ENST00000562626 PURAQ00577 322 aaKnown RBP11.1□□□□□ -0.63
CLK3-208ENST00000562626 ZNF174Q15697 407 aa11.1□□□□□ -0.63
CLK3-208ENST00000562626 TTC38Q5R3I4 469 aa11.1□□□□□ -0.63
CLK3-208ENST00000562626 PPP4R3AQ6IN85 833 aa11.1□□□□□ -0.63
CLK3-208ENST00000562626 KCNV1Q6PIU1 500 aa11.1□□□□□ -0.63
CLK3-208ENST00000562626 MOXD1Q6UVY6 613 aa11.1□□□□□ -0.63
CLK3-208ENST00000562626 METTL7BQ6UX53 244 aa11.1□□□□□ -0.63
CLK3-208ENST00000562626 B3GNT9Q6UX72 402 aa11.1□□□□□ -0.63
CLK3-208ENST00000562626 C4orf32Q8N8J7 132 aa11.1□□□□□ -0.63
CLK3-208ENST00000562626 SPATA33Q96N06 139 aa11.1□□□□□ -0.63
CLK3-208ENST00000562626 SENP7Q9BQF6 1050 aa11.1□□□□□ -0.63
CLK3-208ENST00000562626 ZNF577Q9BSK1 485 aa11.1□□□□□ -0.63
CLK3-208ENST00000562626 VAV3Q9UKW4 847 aa11.1□□□□□ -0.63
CLK3-208ENST00000562626 NFASCO94856 1347 aa11.09□□□□□ -0.63
CLK3-208ENST00000562626 PTPRSQ13332 1948 aa11.09□□□□□ -0.63
CLK3-208ENST00000562626 TET1Q8NFU7 2136 aa11.09□□□□□ -0.63
CLK3-208ENST00000562626 EML1O00423 815 aa11.09□□□□□ -0.63
CLK3-208ENST00000562626 PSMD10O75832 226 aa11.09□□□□□ -0.63
CLK3-208ENST00000562626 HSP90AA1P07900 732 aaKnown RBP11.09□□□□□ -0.63
CLK3-208ENST00000562626 MCM7P33993 719 aa11.09□□□□□ -0.63
CLK3-208ENST00000562626 DDIT3P35638 169 aa11.09□□□□□ -0.63
CLK3-208ENST00000562626 SETQ01105 290 aaPredicted RBP11.09□□□□□ -0.63
CLK3-208ENST00000562626 SPIRE1Q08AE8 756 aa11.09□□□□□ -0.63
CLK3-208ENST00000562626 LAMC2Q13753 1193 aa11.09□□□□□ -0.63
CLK3-208ENST00000562626 GNL2Q13823 731 aaKnown RBP11.09□□□□□ -0.63
CLK3-208ENST00000562626 NEDD9Q14511 834 aa11.09□□□□□ -0.63
CLK3-208ENST00000562626 HIC1Q14526 733 aa11.09□□□□□ -0.63
CLK3-208ENST00000562626 RNF180Q86T96 592 aa11.09□□□□□ -0.63
CLK3-208ENST00000562626 ANKLE1Q8NAG6 615 aa11.09□□□□□ -0.63
CLK3-208ENST00000562626 ARRDC4Q8NCT1 418 aa11.09□□□□□ -0.63
CLK3-208ENST00000562626 PPTC7Q8NI37 304 aa11.09□□□□□ -0.63
CLK3-208ENST00000562626 MTMR9Q96QG7 549 aa11.09□□□□□ -0.63
CLK3-208ENST00000562626 C16orf70Q9BSU1 422 aa11.09□□□□□ -0.63
CLK3-208ENST00000562626 SENP6Q9GZR1 1112 aaPredicted RBP11.09□□□□□ -0.63
CLK3-208ENST00000562626 UNC45AQ9H3U1 944 aa11.09□□□□□ -0.63
CLK3-208ENST00000562626 MLXIPQ9HAP2 919 aa11.09□□□□□ -0.63
CLK3-208ENST00000562626 JPH1Q9HDC5 661 aaPredicted RBP11.09□□□□□ -0.63
CLK3-208ENST00000562626 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 94.2 ms