RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 TAP1Q03518 808 aa13.47□□□□□ -0.25
USP3-220ENST00000561381 TRIM71Q2Q1W2 868 aaKnown RBP13.47□□□□□ -0.25
USP3-220ENST00000561381 CATIPQ7Z7H3 387 aa13.47□□□□□ -0.25
USP3-220ENST00000561381 SAMD3Q8N6K7 520 aa13.47□□□□□ -0.25
USP3-220ENST00000561381 ATXN2LQ8WWM7 1075 aaKnown RBP13.47□□□□□ -0.25
USP3-220ENST00000561381 MAP4K1Q92918 833 aa13.47□□□□□ -0.25
USP3-220ENST00000561381 ASB2Q96Q27 587 aa13.47□□□□□ -0.25
USP3-220ENST00000561381 C16orf70Q9BSU1 422 aa13.47□□□□□ -0.25
USP3-220ENST00000561381 RBM8AQ9Y5S9 174 aaKnown RBP13.47□□□□□ -0.25
USP3-220ENST00000561381 LCHNA4D1U4 455 aa13.46□□□□□ -0.25
USP3-220ENST00000561381 PPFIA4O75335 1185 aa13.46□□□□□ -0.25
USP3-220ENST00000561381 CXCL10P02778 98 aa13.46□□□□□ -0.25
USP3-220ENST00000561381 KCNJ6P48051 423 aa13.46□□□□□ -0.25
USP3-220ENST00000561381 MRPS9P82933 396 aaKnown RBP13.46□□□□□ -0.25
USP3-220ENST00000561381 SEMA3FQ13275 785 aa13.46□□□□□ -0.25
USP3-220ENST00000561381 PTK7Q13308 1070 aa13.46□□□□□ -0.25
USP3-220ENST00000561381 MBTPS1Q14703 1052 aa13.46□□□□□ -0.25
USP3-220ENST00000561381 SART3Q15020 963 aaKnown RBP13.46□□□□□ -0.25
USP3-220ENST00000561381 ZNF618Q5T7W0 954 aa13.46□□□□□ -0.25
USP3-220ENST00000561381 KCNV1Q6PIU1 500 aa13.46□□□□□ -0.25
USP3-220ENST00000561381 ARNTL2Q8WYA1 636 aa13.46□□□□□ -0.25
USP3-220ENST00000561381 LY9Q9HBG7 655 aa13.46□□□□□ -0.25
USP3-220ENST00000561381 RTEL1Q9NZ71 1219 aa13.46□□□□□ -0.25
USP3-220ENST00000561381 TELO2Q9Y4R8 837 aa13.46□□□□□ -0.25
USP3-220ENST00000561381 MTCH2Q9Y6C9 303 aa13.46□□□□□ -0.25
USP3-220ENST00000561381 FRMPD4Q14CM0 1322 aa13.45□□□□□ -0.26
USP3-220ENST00000561381 KIF28PB7ZC32 967 aa13.45□□□□□ -0.26
USP3-220ENST00000561381 TLL1O43897 1013 aa13.45□□□□□ -0.26
USP3-220ENST00000561381 TGFB3P10600 412 aa13.45□□□□□ -0.26
USP3-220ENST00000561381 MRPS5P82675 430 aaKnown RBP13.45□□□□□ -0.26
USP3-220ENST00000561381 TFF2Q03403 129 aa13.45□□□□□ -0.26
USP3-220ENST00000561381 CNKSR3Q6P9H4 555 aa13.45□□□□□ -0.26
USP3-220ENST00000561381 ZNF654Q8IZM8 581 aa13.45□□□□□ -0.26
USP3-220ENST00000561381 MLXIPQ9HAP2 919 aa13.45□□□□□ -0.26
USP3-220ENST00000561381 DOCK5Q9H7D0 1870 aa13.44□□□□□ -0.26
USP3-220ENST00000561381 PRC1O43663 620 aa13.44□□□□□ -0.26
USP3-220ENST00000561381 PLEKHA8P1O95397 391 aa13.44□□□□□ -0.26
USP3-220ENST00000561381 LGALS2P05162 132 aa13.44□□□□□ -0.26
USP3-220ENST00000561381 RXRAP19793 462 aa13.44□□□□□ -0.26
USP3-220ENST00000561381 PSEN1P49768 467 aa13.44□□□□□ -0.26
USP3-220ENST00000561381 TRAF1Q13077 416 aa13.44□□□□□ -0.26
USP3-220ENST00000561381 USP17L6PQ6QN14 398 aa13.44□□□□□ -0.26
USP3-220ENST00000561381 RAB11FIP4Q86YS3 637 aa13.44□□□□□ -0.26
USP3-220ENST00000561381 CMTR1Q8N1G2 835 aaKnown RBP13.44□□□□□ -0.26
USP3-220ENST00000561381 ADAMTS19Q8TE59 1207 aa13.44□□□□□ -0.26
USP3-220ENST00000561381 INPP4AQ96PE3 977 aaPredicted RBP13.44□□□□□ -0.26
USP3-220ENST00000561381 SPZ1Q9BXG8 430 aa13.44□□□□□ -0.26
USP3-220ENST00000561381 LSG1Q9H089 658 aaKnown RBP13.44□□□□□ -0.26
USP3-220ENST00000561381 REV3LO60673 3130 aa13.44□□□□□ -0.26
USP3-220ENST00000561381 TCF20Q9UGU0 1960 aaKnown RBP13.43□□□□□ -0.26
USP3-220ENST00000561381 ABHD14A-ACY1A0A1B0GW23 586 aa13.43□□□□□ -0.26
USP3-220ENST00000561381 SPATA31C2B4DYI2 1134 aa13.43□□□□□ -0.26
USP3-220ENST00000561381 H3BRB1 525 aa13.43□□□□□ -0.26
USP3-220ENST00000561381 TNFRSF10AO00220 468 aa13.43□□□□□ -0.26
USP3-220ENST00000561381 MEIS2O14770 477 aa13.43□□□□□ -0.26
USP3-220ENST00000561381 LPXNO60711 386 aa13.43□□□□□ -0.26
USP3-220ENST00000561381 PARNO95453 639 aaKnown RBP13.43□□□□□ -0.26
USP3-220ENST00000561381 SMIM10L2AP0DMW4 78 aa13.43□□□□□ -0.26
USP3-220ENST00000561381 SMIM10L2BP0DMW5 78 aa13.43□□□□□ -0.26
USP3-220ENST00000561381 POU3F3P20264 500 aaPredicted RBP13.43□□□□□ -0.26
USP3-220ENST00000561381 THPOP40225 353 aa13.43□□□□□ -0.26
USP3-220ENST00000561381 GRB10Q13322 594 aa13.43□□□□□ -0.26
USP3-220ENST00000561381 SKIV2LQ15477 1246 aaKnown RBP13.43□□□□□ -0.26
USP3-220ENST00000561381 FAM117BQ6P1L5 589 aa13.43□□□□□ -0.26
USP3-220ENST00000561381 CYFIP1Q7L576 1253 aa13.43□□□□□ -0.26
USP3-220ENST00000561381 SERINC5Q86VE9 423 aa13.43□□□□□ -0.26
USP3-220ENST00000561381 TRIM50Q86XT4 487 aa13.43□□□□□ -0.26
USP3-220ENST00000561381 SRBD1Q8N5C6 995 aaKnown RBP13.43□□□□□ -0.26
USP3-220ENST00000561381 CTCFLQ8NI51 663 aaPredicted RBP13.43□□□□□ -0.26
USP3-220ENST00000561381 NECAB3Q96P71 396 aaPredicted RBP13.43□□□□□ -0.26
USP3-220ENST00000561381 ZBED2Q9BTP6 218 aa13.43□□□□□ -0.26
USP3-220ENST00000561381 OSBPL7Q9BZF2 842 aa13.43□□□□□ -0.26
USP3-220ENST00000561381 TUT1Q9H6E5 874 aaKnown RBP13.43□□□□□ -0.26
USP3-220ENST00000561381 MUC3AQ02505 3323 aa13.43□□□□□ -0.26
USP3-220ENST00000561381 C17orf102A2RUQ5 167 aa13.42□□□□□ -0.26
USP3-220ENST00000561381 NOP56O00567 594 aaKnown RBP13.42□□□□□ -0.26
USP3-220ENST00000561381 SH2B2O14492 632 aaPredicted RBP13.42□□□□□ -0.26
USP3-220ENST00000561381 SLC27A2O14975 620 aa13.42□□□□□ -0.26
USP3-220ENST00000561381 TREHO43280 583 aa13.42□□□□□ -0.26
USP3-220ENST00000561381 GTPBP6O43824 516 aaPredicted RBP13.42□□□□□ -0.26
USP3-220ENST00000561381 DDAH1O94760 285 aa13.42□□□□□ -0.26
USP3-220ENST00000561381 HOXC8P31273 242 aa13.42□□□□□ -0.26
USP3-220ENST00000561381 ICAM3P32942 547 aa13.42□□□□□ -0.26
USP3-220ENST00000561381 KCNQ1P51787 676 aa13.42□□□□□ -0.26
USP3-220ENST00000561381 SP4Q02446 784 aa13.42□□□□□ -0.26
USP3-220ENST00000561381 IKBKEQ14164 716 aa13.42□□□□□ -0.26
USP3-220ENST00000561381 CASC1Q6TDU7 716 aa13.42□□□□□ -0.26
USP3-220ENST00000561381 METTL7BQ6UX53 244 aa13.42□□□□□ -0.26
USP3-220ENST00000561381 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.42□□□□□ -0.26
USP3-220ENST00000561381 NFXL1Q6ZNB6 911 aa13.42□□□□□ -0.26
USP3-220ENST00000561381 SKAP1Q86WV1 359 aa13.42□□□□□ -0.26
USP3-220ENST00000561381 SMARCC2Q8TAQ2 1214 aa13.42□□□□□ -0.26
USP3-220ENST00000561381 ATP6V0A1Q93050 837 aa13.42□□□□□ -0.26
USP3-220ENST00000561381 RRP36Q96EU6 259 aaKnown RBP13.42□□□□□ -0.26
USP3-220ENST00000561381 MAP3K14Q99558 947 aa13.42□□□□□ -0.26
USP3-220ENST00000561381 GPR20Q99678 358 aa13.42□□□□□ -0.26
USP3-220ENST00000561381 LRRC2Q9BYS8 371 aa13.42□□□□□ -0.26
USP3-220ENST00000561381 RNPEPQ9H4A4 650 aa13.42□□□□□ -0.26
USP3-220ENST00000561381 COL4A4P53420 1690 aaPredicted RBP13.41□□□□□ -0.26
USP3-220ENST00000561381 hCG_1642624A0A1W2PR95 340 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 119.7 ms