RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 DNAJC18Q9H819 358 aa14.25□□□□□ -0.13
LDLR-207ENST00000558013 RBM12Q9NTZ6 932 aaKnown RBP14.25□□□□□ -0.13
LDLR-207ENST00000558013 COL4A3BPQ9Y5P4 624 aa14.25□□□□□ -0.13
LDLR-207ENST00000558013 ESYT3A0FGR9 886 aa14.25□□□□□ -0.13
LDLR-207ENST00000558013 TULP2O00295 520 aa14.25□□□□□ -0.13
LDLR-207ENST00000558013 MED24O75448 989 aa14.25□□□□□ -0.13
LDLR-207ENST00000558013 NT5C2P49902 561 aa14.25□□□□□ -0.13
LDLR-207ENST00000558013 CDC42EP5Q6NZY7 148 aa14.25□□□□□ -0.13
LDLR-207ENST00000558013 SND1Q7KZF4 910 aaKnown RBP eCLIP14.25□□□□□ -0.132e-7■■■□□ 16.9
LDLR-207ENST00000558013 GOLGA5Q8TBA6 731 aa14.25□□□□□ -0.13
LDLR-207ENST00000558013 SCFD1Q8WVM8 642 aa14.25□□□□□ -0.13
LDLR-207ENST00000558013 EHD4Q9H223 541 aa14.25□□□□□ -0.13
LDLR-207ENST00000558013 IKZF4Q9H2S9 585 aa14.25□□□□□ -0.13
LDLR-207ENST00000558013 ZNF831Q5JPB2 1677 aa14.25□□□□□ -0.13
LDLR-207ENST00000558013 ZBTB5O15062 677 aa14.24□□□□□ -0.13
LDLR-207ENST00000558013 FKBP3Q00688 224 aaKnown RBP14.24□□□□□ -0.13
LDLR-207ENST00000558013 ARSHQ5FYA8 562 aa14.24□□□□□ -0.13
LDLR-207ENST00000558013 MUM1L1Q5H9M0 696 aa14.24□□□□□ -0.13
LDLR-207ENST00000558013 KLHDC7AQ5VTJ3 777 aa14.24□□□□□ -0.13
LDLR-207ENST00000558013 PPP4R3AQ6IN85 833 aa14.24□□□□□ -0.13
LDLR-207ENST00000558013 GPBP1Q86WP2 473 aa14.24□□□□□ -0.13
LDLR-207ENST00000558013 TARSL2A2RTX5 802 aaKnown RBP14.24□□□□□ -0.13
LDLR-207ENST00000558013 BBOX1O75936 387 aa14.24□□□□□ -0.13
LDLR-207ENST00000558013 PLA2G4BP0C869 781 aa14.24□□□□□ -0.13
LDLR-207ENST00000558013 TRADDQ15628 312 aa14.24□□□□□ -0.13
LDLR-207ENST00000558013 LRRC31Q6UY01 552 aa14.24□□□□□ -0.13
LDLR-207ENST00000558013 TBC1D22AQ8WUA7 517 aa14.24□□□□□ -0.13
LDLR-207ENST00000558013 TBC1D5Q92609 795 aa14.24□□□□□ -0.13
LDLR-207ENST00000558013 ADAMTS1Q9UHI8 967 aa14.24□□□□□ -0.13
LDLR-207ENST00000558013 PCDHA2Q9Y5H9 948 aa14.24□□□□□ -0.13
LDLR-207ENST00000558013 PCDHA1Q9Y5I3 950 aa14.24□□□□□ -0.13
LDLR-207ENST00000558013 LCA5LO95447 670 aa14.24□□□□□ -0.13
LDLR-207ENST00000558013 PPP1R2P41236 205 aa14.24□□□□□ -0.13
LDLR-207ENST00000558013 QRICH1Q2TAL8 776 aa14.24□□□□□ -0.13
LDLR-207ENST00000558013 TTC19Q6DKK2 380 aaPredicted RBP14.24□□□□□ -0.13
LDLR-207ENST00000558013 SLF2Q8IX21 1173 aa14.24□□□□□ -0.13
LDLR-207ENST00000558013 FAM133AQ8N9E0 248 aa14.24□□□□□ -0.13
LDLR-207ENST00000558013 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.24□□□□□ -0.13
LDLR-207ENST00000558013 TSGA10Q9BZW7 698 aa14.24□□□□□ -0.13
LDLR-207ENST00000558013 A0A087X0T9 212 aa14.23□□□□□ -0.13
LDLR-207ENST00000558013 TUBBP07437 444 aa14.23□□□□□ -0.13
LDLR-207ENST00000558013 FAM228BP0C875 321 aa14.23□□□□□ -0.13
LDLR-207ENST00000558013 KLRC1P26715 233 aa14.23□□□□□ -0.13
LDLR-207ENST00000558013 AARSP49588 968 aaKnown RBP eCLIP14.23□□□□□ -0.13
LDLR-207ENST00000558013 MSL3Q8N5Y2 521 aaKnown RBP14.23□□□□□ -0.13
LDLR-207ENST00000558013 TSEN2Q8NCE0 465 aaKnown RBP14.23□□□□□ -0.13
LDLR-207ENST00000558013 PROCA1Q8NCQ7 364 aaPredicted RBP14.23□□□□□ -0.13
LDLR-207ENST00000558013 TSG101Q99816 390 aa14.23□□□□□ -0.13
LDLR-207ENST00000558013 MED4Q9NPJ6 270 aa14.23□□□□□ -0.13
LDLR-207ENST00000558013 MYH7BA7E2Y1 1941 aa14.23□□□□□ -0.13
LDLR-207ENST00000558013 A0A0U1RQG5 324 aaPredicted RBP14.23□□□□□ -0.13
LDLR-207ENST00000558013 CYP11B2P19099 503 aa14.23□□□□□ -0.13
LDLR-207ENST00000558013 MRPL12P52815 198 aaKnown RBP14.23□□□□□ -0.13
LDLR-207ENST00000558013 RAPGEF1Q13905 1077 aa14.23□□□□□ -0.13
LDLR-207ENST00000558013 USH1GQ495M9 461 aa14.23□□□□□ -0.13
LDLR-207ENST00000558013 DNAJC21Q5F1R6 531 aaKnown RBP14.23□□□□□ -0.13
LDLR-207ENST00000558013 APOBEC3HQ6NTF7 200 aaKnown RBP14.23□□□□□ -0.13
LDLR-207ENST00000558013 FNBP4Q8N3X1 1017 aaPredicted RBP14.23□□□□□ -0.13
LDLR-207ENST00000558013 CYP2W1Q8TAV3 490 aa14.23□□□□□ -0.13
LDLR-207ENST00000558013 AENQ8WTP8 325 aaKnown RBP14.23□□□□□ -0.13
LDLR-207ENST00000558013 PALMO75781 387 aa14.22□□□□□ -0.13
LDLR-207ENST00000558013 POLD1P28340 1107 aa14.22□□□□□ -0.13
LDLR-207ENST00000558013 PABPC4Q13310 644 aaKnown RBP eCLIP14.22□□□□□ -0.13
LDLR-207ENST00000558013 PRR16Q569H4 304 aa14.22□□□□□ -0.13
LDLR-207ENST00000558013 CCDC181Q5TID7 509 aa14.22□□□□□ -0.13
LDLR-207ENST00000558013 HAUS3Q68CZ6 603 aa14.22□□□□□ -0.13
LDLR-207ENST00000558013 LEKR1Q6ZMV7 388 aa14.22□□□□□ -0.13
LDLR-207ENST00000558013 C10orf67Q8IYJ2 551 aa14.22□□□□□ -0.13
LDLR-207ENST00000558013 RPGRIP1Q96KN7 1286 aa14.22□□□□□ -0.13
LDLR-207ENST00000558013 ATF5Q9Y2D1 282 aaPredicted RBP14.22□□□□□ -0.13
LDLR-207ENST00000558013 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.22□□□□□ -0.13
LDLR-207ENST00000558013 EEF2P13639 858 aaKnown RBP14.22□□□□□ -0.13
LDLR-207ENST00000558013 PPARDQ03181 441 aa14.22□□□□□ -0.13
LDLR-207ENST00000558013 ADAM9Q13443 819 aa14.22□□□□□ -0.13
LDLR-207ENST00000558013 MAP9Q49MG5 647 aa14.22□□□□□ -0.13
LDLR-207ENST00000558013 CERS3Q8IU89 383 aa14.22□□□□□ -0.13
LDLR-207ENST00000558013 KCTD10Q9H3F6 313 aa14.22□□□□□ -0.13
LDLR-207ENST00000558013 VIPAS39Q9H9C1 493 aa14.22□□□□□ -0.13
LDLR-207ENST00000558013 DBNDD1Q9H9R9 158 aa14.22□□□□□ -0.13
LDLR-207ENST00000558013 EMILIN3Q9NT22 766 aa14.22□□□□□ -0.13
LDLR-207ENST00000558013 RSPH14Q9UHP6 348 aa14.22□□□□□ -0.13
LDLR-207ENST00000558013 DDTLA6NHG4 134 aaPredicted RBP14.21□□□□□ -0.13
LDLR-207ENST00000558013 POLRMTO00411 1230 aaKnown RBP14.21□□□□□ -0.13
LDLR-207ENST00000558013 PPEF1O14829 653 aaPredicted RBP14.21□□□□□ -0.13
LDLR-207ENST00000558013 GLI1P08151 1106 aa14.21□□□□□ -0.13
LDLR-207ENST00000558013 SLC9A1P19634 815 aa14.21□□□□□ -0.13
LDLR-207ENST00000558013 CYP4A11Q02928 519 aa14.21□□□□□ -0.13
LDLR-207ENST00000558013 KCNA1Q09470 495 aa14.21□□□□□ -0.13
LDLR-207ENST00000558013 ORC2Q13416 577 aaPredicted RBP14.21□□□□□ -0.13
LDLR-207ENST00000558013 SFMBT2Q5VUG0 894 aa14.21□□□□□ -0.13
LDLR-207ENST00000558013 KIAA0825Q8IV33 1275 aa14.21□□□□□ -0.13
LDLR-207ENST00000558013 MMGT1Q8N4V1 131 aa14.21□□□□□ -0.13
LDLR-207ENST00000558013 ZC3H12CQ9C0D7 883 aaKnown RBP14.21□□□□□ -0.13
LDLR-207ENST00000558013 HYOU1Q9Y4L1 999 aa14.21□□□□□ -0.13
LDLR-207ENST00000558013 PLIN4Q96Q06 1357 aa14.21□□□□□ -0.13
LDLR-207ENST00000558013 SFI1A8K8P3 1242 aa14.21□□□□□ -0.13
LDLR-207ENST00000558013 RSPH10B2B2RC85 870 aa14.21□□□□□ -0.13
LDLR-207ENST00000558013 FGFR1OPO95684 399 aaKnown RBP14.21□□□□□ -0.13
LDLR-207ENST00000558013 KRT18P05783 430 aaKnown RBP14.21□□□□□ -0.13
LDLR-207ENST00000558013 RSPH10BP0C881 870 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms