RNA–Protein interactions for RNA: ENST00000554844.1

TMEM253-204, Transcript of transmembrane protein 253, humanhuman

TSL 4

Gene TMEM253, Length 591 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM253-204ENST00000554844 PCDHA1Q9Y5I3 950 aa11.21□□□□□ -0.61
TMEM253-204ENST00000554844 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.2□□□□□ -0.62
TMEM253-204ENST00000554844 KLRF2D3W0D1 207 aa11.2□□□□□ -0.62
TMEM253-204ENST00000554844 H3BRB1 525 aa11.2□□□□□ -0.62
TMEM253-204ENST00000554844 GCOM1H8Y6P7 765 aaPredicted RBP11.2□□□□□ -0.62
TMEM253-204ENST00000554844 ZBTB5O15062 677 aa11.2□□□□□ -0.62
TMEM253-204ENST00000554844 UPP2O95045 317 aa11.2□□□□□ -0.62
TMEM253-204ENST00000554844 POLR2MP0CAP2 368 aa11.2□□□□□ -0.62
TMEM253-204ENST00000554844 UBA1P22314 1058 aaKnown RBP11.2□□□□□ -0.62
TMEM253-204ENST00000554844 RRP1P56182 461 aaKnown RBP11.2□□□□□ -0.62
TMEM253-204ENST00000554844 TRDNQ13061 729 aa11.2□□□□□ -0.62
TMEM253-204ENST00000554844 GPM6BQ13491 265 aa11.2□□□□□ -0.62
TMEM253-204ENST00000554844 HDAC1Q13547 482 aaPredicted RBP11.2□□□□□ -0.62
TMEM253-204ENST00000554844 PGM5Q15124 567 aa11.2□□□□□ -0.62
TMEM253-204ENST00000554844 EPC2Q52LR7 807 aa11.2□□□□□ -0.62
TMEM253-204ENST00000554844 MYSM1Q5VVJ2 828 aa11.2□□□□□ -0.62
TMEM253-204ENST00000554844 HOMER1Q86YM7 354 aa11.2□□□□□ -0.62
TMEM253-204ENST00000554844 SPRYD3Q8NCJ5 442 aa11.2□□□□□ -0.62
TMEM253-204ENST00000554844 BANK1Q8NDB2 785 aa11.2□□□□□ -0.62
TMEM253-204ENST00000554844 APBB2Q92870 758 aa11.2□□□□□ -0.62
TMEM253-204ENST00000554844 TUT1Q9H6E5 874 aaKnown RBP11.2□□□□□ -0.62
TMEM253-204ENST00000554844 ZNF215Q9UL58 517 aaPredicted RBP11.2□□□□□ -0.62
TMEM253-204ENST00000554844 MICAL3Q7RTP6 2002 aa11.19□□□□□ -0.62
TMEM253-204ENST00000554844 ERICH2A1L162 156 aa11.19□□□□□ -0.62
TMEM253-204ENST00000554844 NCK2O43639 380 aa11.19□□□□□ -0.62
TMEM253-204ENST00000554844 CTSHP09668 335 aa11.19□□□□□ -0.62
TMEM253-204ENST00000554844 SMIM10L2AP0DMW4 78 aa11.19□□□□□ -0.62
TMEM253-204ENST00000554844 SMIM10L2BP0DMW5 78 aa11.19□□□□□ -0.62
TMEM253-204ENST00000554844 HOXD8P13378 290 aaPredicted RBP11.19□□□□□ -0.62
TMEM253-204ENST00000554844 IL9P15248 144 aa11.19□□□□□ -0.62
TMEM253-204ENST00000554844 HOXA13P31271 388 aaPredicted RBP11.19□□□□□ -0.62
TMEM253-204ENST00000554844 HTRA4P83105 476 aaPredicted RBP11.19□□□□□ -0.62
TMEM253-204ENST00000554844 MBTPS1Q14703 1052 aa11.19□□□□□ -0.62
TMEM253-204ENST00000554844 TCTN1Q2MV58 587 aa11.19□□□□□ -0.62
TMEM253-204ENST00000554844 HSDL1Q3SXM5 330 aa11.19□□□□□ -0.62
TMEM253-204ENST00000554844 PLEKHG4Q58EX7 1191 aa11.19□□□□□ -0.62
TMEM253-204ENST00000554844 VSIG10LQ86VR7 867 aa11.19□□□□□ -0.62
TMEM253-204ENST00000554844 FCHSD1Q86WN1 690 aa11.19□□□□□ -0.62
TMEM253-204ENST00000554844 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.19□□□□□ -0.62
TMEM253-204ENST00000554844 WNT8BQ93098 351 aa11.19□□□□□ -0.62
TMEM253-204ENST00000554844 DSCC1Q9BVC3 393 aa11.19□□□□□ -0.62
TMEM253-204ENST00000554844 USP26Q9BXU7 913 aa11.19□□□□□ -0.62
TMEM253-204ENST00000554844 IFIH1Q9BYX4 1025 aaKnown RBP11.19□□□□□ -0.62
TMEM253-204ENST00000554844 UPF3BQ9BZI7 483 aaKnown RBP11.19□□□□□ -0.62
TMEM253-204ENST00000554844 RWDD1Q9H446 243 aaPredicted RBP11.19□□□□□ -0.62
TMEM253-204ENST00000554844 NSUN3Q9H649 340 aaKnown RBP11.19□□□□□ -0.62
TMEM253-204ENST00000554844 ZSWIM5Q9P217 1185 aa11.19□□□□□ -0.62
TMEM253-204ENST00000554844 RWDD3Q9Y3V2 267 aa11.19□□□□□ -0.62
TMEM253-204ENST00000554844 GRXCR2A6NFK2 248 aa11.18□□□□□ -0.62
TMEM253-204ENST00000554844 H3BNC9 293 aa11.18□□□□□ -0.62
TMEM253-204ENST00000554844 H3BQ06 376 aaPredicted RBP11.18□□□□□ -0.62
TMEM253-204ENST00000554844 DCXO43602 365 aa11.18□□□□□ -0.62
TMEM253-204ENST00000554844 STAM2O75886 525 aa11.18□□□□□ -0.62
TMEM253-204ENST00000554844 LGALS2P05162 132 aa11.18□□□□□ -0.62
TMEM253-204ENST00000554844 PYGBP11216 843 aa11.18□□□□□ -0.62
TMEM253-204ENST00000554844 CTNNB1P35222 781 aa11.18□□□□□ -0.62
TMEM253-204ENST00000554844 NEDD9Q14511 834 aa11.18□□□□□ -0.62
TMEM253-204ENST00000554844 B4GALNT3Q6L9W6 998 aa11.18□□□□□ -0.62
TMEM253-204ENST00000554844 TRAF7Q6Q0C0 670 aa11.18□□□□□ -0.62
TMEM253-204ENST00000554844 STOX1Q6ZVD7 989 aa11.18□□□□□ -0.62
TMEM253-204ENST00000554844 TMEM192Q8IY95 271 aa11.18□□□□□ -0.62
TMEM253-204ENST00000554844 FIBCD1Q8N539 461 aa11.18□□□□□ -0.62
TMEM253-204ENST00000554844 SP7Q8TDD2 431 aaPredicted RBP11.18□□□□□ -0.62
TMEM253-204ENST00000554844 KHSRPQ92945 711 aaKnown RBP eCLIP11.18□□□□□ -0.62
TMEM253-204ENST00000554844 PABPC5Q96DU9 382 aaKnown RBP11.18□□□□□ -0.62
TMEM253-204ENST00000554844 CLDND1Q9NY35 253 aa11.18□□□□□ -0.62
TMEM253-204ENST00000554844 TREHO43280 583 aa11.17□□□□□ -0.62
TMEM253-204ENST00000554844 ARHGAP4P98171 946 aa11.17□□□□□ -0.62
TMEM253-204ENST00000554844 GHRHRQ02643 423 aa11.17□□□□□ -0.62
TMEM253-204ENST00000554844 AAMPQ13685 434 aa11.17□□□□□ -0.62
TMEM253-204ENST00000554844 SART3Q15020 963 aaKnown RBP11.17□□□□□ -0.62
TMEM253-204ENST00000554844 TCEAL5Q5H9L2 206 aa11.17□□□□□ -0.62
TMEM253-204ENST00000554844 RSPH3Q86UC2 560 aa11.17□□□□□ -0.62
TMEM253-204ENST00000554844 STAG2Q8N3U4 1231 aa11.17□□□□□ -0.62
TMEM253-204ENST00000554844 CUL5Q93034 780 aa11.17□□□□□ -0.62
TMEM253-204ENST00000554844 TOP1MTQ969P6 601 aa11.17□□□□□ -0.62
TMEM253-204ENST00000554844 PPP2R3CQ969Q6 453 aa11.17□□□□□ -0.62
TMEM253-204ENST00000554844 IL17RAQ96F46 866 aa11.17□□□□□ -0.62
TMEM253-204ENST00000554844 POP1Q99575 1024 aaKnown RBP11.17□□□□□ -0.62
TMEM253-204ENST00000554844 C16orf70Q9BSU1 422 aa11.17□□□□□ -0.62
TMEM253-204ENST00000554844 C11orf84Q9BUA3 381 aaPredicted RBP11.17□□□□□ -0.62
TMEM253-204ENST00000554844 CD320Q9NPF0 282 aa11.17□□□□□ -0.62
TMEM253-204ENST00000554844 C11orf16Q9NQ32 467 aa11.17□□□□□ -0.62
TMEM253-204ENST00000554844 PRKAG3Q9UGI9 489 aa11.17□□□□□ -0.62
TMEM253-204ENST00000554844 MUC6Q6W4X9 2439 aa11.17□□□□□ -0.62
TMEM253-204ENST00000554844 FIBPO43427 364 aa11.16□□□□□ -0.62
TMEM253-204ENST00000554844 RGS20O76081 388 aa11.16□□□□□ -0.62
TMEM253-204ENST00000554844 UTP14CQ5TAP6 766 aaKnown RBP11.16□□□□□ -0.62
TMEM253-204ENST00000554844 METTL7BQ6UX53 244 aa11.16□□□□□ -0.62
TMEM253-204ENST00000554844 CYFIP1Q7L576 1253 aa11.16□□□□□ -0.62
TMEM253-204ENST00000554844 RALYLQ86SE5 291 aaKnown RBP11.16□□□□□ -0.62
TMEM253-204ENST00000554844 ALYREFQ86V81 257 aaKnown RBP11.16□□□□□ -0.62
TMEM253-204ENST00000554844 CHD1LQ86WJ1 897 aa11.16□□□□□ -0.62
TMEM253-204ENST00000554844 IL31RAQ8NI17 732 aa11.16□□□□□ -0.62
TMEM253-204ENST00000554844 SMARCC2Q8TAQ2 1214 aa11.16□□□□□ -0.62
TMEM253-204ENST00000554844 NEK9Q8TD19 979 aa11.16□□□□□ -0.62
TMEM253-204ENST00000554844 LMAN2LQ9H0V9 348 aa11.16□□□□□ -0.62
TMEM253-204ENST00000554844 RNPEPQ9H4A4 650 aa11.16□□□□□ -0.62
TMEM253-204ENST00000554844 MAD2L2Q9UI95 211 aa11.16□□□□□ -0.62
TMEM253-204ENST00000554844 PIEZO1Q92508 2521 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms