RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 MAGEB10Q96LZ2 347 aaPredicted RBP5.01□□□□□ -1.61
VRK1-202ENST00000553683 KCNC2Q96PR1 638 aa5.01□□□□□ -1.61
VRK1-202ENST00000553683 TMEM209Q96SK2 561 aa5.01□□□□□ -1.61
VRK1-202ENST00000553683 C11orf84Q9BUA3 381 aaPredicted RBP5.01□□□□□ -1.61
VRK1-202ENST00000553683 IPPKQ9H8X2 491 aa5.01□□□□□ -1.61
VRK1-202ENST00000553683 NTMQ9P121 344 aa5.01□□□□□ -1.61
VRK1-202ENST00000553683 DSEQ9UL01 958 aa5.01□□□□□ -1.61
VRK1-202ENST00000553683 PTCH2Q9Y6C5 1203 aa5.01□□□□□ -1.61
VRK1-202ENST00000553683 LOC101059915A0A1B0GWI6 518 aaPredicted RBP5□□□□□ -1.61
VRK1-202ENST00000553683 SMARCA5O60264 1052 aaPredicted RBP5□□□□□ -1.61
VRK1-202ENST00000553683 SASH1O94885 1247 aa5□□□□□ -1.61
VRK1-202ENST00000553683 RPL13P26373 211 aaKnown RBP5□□□□□ -1.61
VRK1-202ENST00000553683 LACTBP83111 547 aaPredicted RBP5□□□□□ -1.61
VRK1-202ENST00000553683 DLX2Q07687 328 aaPredicted RBP5□□□□□ -1.61
VRK1-202ENST00000553683 TEPPQ6URK8 271 aa5□□□□□ -1.61
VRK1-202ENST00000553683 CD300LDQ6UXZ3 194 aa5□□□□□ -1.61
VRK1-202ENST00000553683 LIPIQ6XZB0 460 aa5□□□□□ -1.61
VRK1-202ENST00000553683 TP53I13Q8NBR0 393 aaPredicted RBP5□□□□□ -1.61
VRK1-202ENST00000553683 ARRDC4Q8NCT1 418 aa5□□□□□ -1.61
VRK1-202ENST00000553683 GORASP1Q9BQQ3 440 aa5□□□□□ -1.61
VRK1-202ENST00000553683 BCAS3Q9H6U6 928 aa5□□□□□ -1.61
VRK1-202ENST00000553683 NCOA5Q9HCD5 579 aaKnown RBP5□□□□□ -1.61
VRK1-202ENST00000553683 PARD6AQ9NPB6 346 aa5□□□□□ -1.61
VRK1-202ENST00000553683 TMEM260Q9NX78 707 aa5□□□□□ -1.61
VRK1-202ENST00000553683 PPARGC1AQ9UBK2 798 aaKnown RBP5□□□□□ -1.61
VRK1-202ENST00000553683 TRAF6Q9Y4K3 522 aa5□□□□□ -1.61
VRK1-202ENST00000553683 B4E1Z4 1266 aa4.99□□□□□ -1.61
VRK1-202ENST00000553683 RFPL3O75679 317 aa4.99□□□□□ -1.61
VRK1-202ENST00000553683 LRG1P02750 347 aa4.99□□□□□ -1.61
VRK1-202ENST00000553683 CHGBP05060 677 aa4.99□□□□□ -1.61
VRK1-202ENST00000553683 GJA4P35212 333 aa4.99□□□□□ -1.61
VRK1-202ENST00000553683 THBS2P35442 1172 aa4.99□□□□□ -1.61
VRK1-202ENST00000553683 ITGA1P56199 1179 aa4.99□□□□□ -1.61
VRK1-202ENST00000553683 TTLL10Q6ZVT0 673 aa4.99□□□□□ -1.61
VRK1-202ENST00000553683 KCTD1Q719H9 257 aa4.99□□□□□ -1.61
VRK1-202ENST00000553683 PNPLA5Q7Z6Z6 429 aaPredicted RBP4.99□□□□□ -1.61
VRK1-202ENST00000553683 KRTAP9-9Q9BYP9 154 aa4.99□□□□□ -1.61
VRK1-202ENST00000553683 KRTAP9-4Q9BYQ2 154 aa4.99□□□□□ -1.61
VRK1-202ENST00000553683 CELF4Q9BZC1 486 aaKnown RBP4.99□□□□□ -1.61
VRK1-202ENST00000553683 SLC52A2Q9HAB3 445 aa4.99□□□□□ -1.61
VRK1-202ENST00000553683 SFMBT1Q9UHJ3 866 aa4.99□□□□□ -1.61
VRK1-202ENST00000553683 PCDHA8Q9Y5H6 950 aa4.99□□□□□ -1.61
VRK1-202ENST00000553683 ADAMTS20P59510 1910 aa4.99□□□□□ -1.61
VRK1-202ENST00000553683 SLC27A2O14975 620 aa4.98□□□□□ -1.61
VRK1-202ENST00000553683 TRIM13O60858 407 aa4.98□□□□□ -1.61
VRK1-202ENST00000553683 CRTAMO95727 393 aa4.98□□□□□ -1.61
VRK1-202ENST00000553683 FAHP16930 419 aa4.98□□□□□ -1.61
VRK1-202ENST00000553683 SARSP49591 514 aaKnown RBP4.98□□□□□ -1.61
VRK1-202ENST00000553683 ST5P78524 1137 aa4.98□□□□□ -1.61
VRK1-202ENST00000553683 TUSC3Q13454 348 aa4.98□□□□□ -1.61
VRK1-202ENST00000553683 CRY1Q16526 586 aa4.98□□□□□ -1.61
VRK1-202ENST00000553683 FIGNQ5HY92 759 aa4.98□□□□□ -1.61
VRK1-202ENST00000553683 FAM26FQ5R3K3 315 aa4.98□□□□□ -1.61
VRK1-202ENST00000553683 PRR31Q5SQ13 230 aa4.98□□□□□ -1.61
VRK1-202ENST00000553683 ZC3H7AQ8IWR0 971 aaKnown RBP4.98□□□□□ -1.61
VRK1-202ENST00000553683 CARFQ8N187 725 aa4.98□□□□□ -1.61
VRK1-202ENST00000553683 SLC7A14Q8TBB6 771 aa4.98□□□□□ -1.61
VRK1-202ENST00000553683 CLEC4DQ8WXI8 215 aa4.98□□□□□ -1.61
VRK1-202ENST00000553683 ZBTB8AQ96BR9 441 aa4.98□□□□□ -1.61
VRK1-202ENST00000553683 NOX5Q96PH1 765 aa4.98□□□□□ -1.61
VRK1-202ENST00000553683 KCNJ15Q99712 375 aa4.98□□□□□ -1.61
VRK1-202ENST00000553683 TRIM39Q9HCM9 518 aa4.98□□□□□ -1.61
VRK1-202ENST00000553683 SPATA6Q9NWH7 488 aaPredicted RBP4.98□□□□□ -1.61
VRK1-202ENST00000553683 NDOR1Q9UHB4 597 aa4.98□□□□□ -1.61
VRK1-202ENST00000553683 SRPK3Q9UPE1 567 aa4.98□□□□□ -1.61
VRK1-202ENST00000553683 NKRFO15226 690 aaKnown RBP eCLIP4.97□□□□□ -1.61
VRK1-202ENST00000553683 CLASP2O75122 1294 aaKnown RBP4.97□□□□□ -1.61
VRK1-202ENST00000553683 KCNC1P48547 511 aa4.97□□□□□ -1.61
VRK1-202ENST00000553683 SLURP1P55000 103 aa4.97□□□□□ -1.61
VRK1-202ENST00000553683 ADAM9Q13443 819 aa4.97□□□□□ -1.61
VRK1-202ENST00000553683 SQSTM1Q13501 440 aa4.97□□□□□ -1.61
VRK1-202ENST00000553683 PAN2Q504Q3 1202 aaKnown RBP4.97□□□□□ -1.61
VRK1-202ENST00000553683 HHIPL2Q6UWX4 724 aa4.97□□□□□ -1.61
VRK1-202ENST00000553683 ARHGAP36Q6ZRI8 547 aa4.97□□□□□ -1.61
VRK1-202ENST00000553683 NOP9Q86U38 636 aaKnown RBP4.97□□□□□ -1.61
VRK1-202ENST00000553683 FAM26EQ8N5C1 309 aa4.97□□□□□ -1.61
VRK1-202ENST00000553683 SH3TC2Q8TF17 1288 aa4.97□□□□□ -1.61
VRK1-202ENST00000553683 ZNF526Q8TF50 670 aaPredicted RBP4.97□□□□□ -1.61
VRK1-202ENST00000553683 CLIC6Q96NY7 704 aa4.97□□□□□ -1.61
VRK1-202ENST00000553683 CATSPERZQ9NTU4 200 aa4.97□□□□□ -1.61
VRK1-202ENST00000553683 INTS7Q9NVH2 962 aaKnown RBP4.97□□□□□ -1.61
VRK1-202ENST00000553683 PCDHA9Q9Y5H5 950 aa4.97□□□□□ -1.61
VRK1-202ENST00000553683 TCRBV16S1A1N1A0A5B0 115 aa4.96□□□□□ -1.62
VRK1-202ENST00000553683 C9orf118A6NHY6 69 aa4.96□□□□□ -1.62
VRK1-202ENST00000553683 ZNF561-AS1K7EIQ3 104 aa4.96□□□□□ -1.62
VRK1-202ENST00000553683 CKMP06732 381 aa4.96□□□□□ -1.62
VRK1-202ENST00000553683 ENO2P09104 434 aaPredicted RBP4.96□□□□□ -1.62
VRK1-202ENST00000553683 COL6A2P12110 1019 aa4.96□□□□□ -1.62
VRK1-202ENST00000553683 PDE6AP16499 860 aa4.96□□□□□ -1.62
VRK1-202ENST00000553683 BMP7P18075 431 aa4.96□□□□□ -1.62
VRK1-202ENST00000553683 STAT5AP42229 794 aa4.96□□□□□ -1.62
VRK1-202ENST00000553683 HERVK_113P62684 666 aa4.96□□□□□ -1.62
VRK1-202ENST00000553683 ZFYVE27Q5T4F4 411 aa4.96□□□□□ -1.62
VRK1-202ENST00000553683 FRMD5Q7Z6J6 570 aa4.96□□□□□ -1.62
VRK1-202ENST00000553683 SH3RF2Q8TEC5 729 aa4.96□□□□□ -1.62
VRK1-202ENST00000553683 SCLYQ96I15 445 aa4.96□□□□□ -1.62
VRK1-202ENST00000553683 ZCCHC4Q9H5U6 513 aa4.96□□□□□ -1.62
VRK1-202ENST00000553683 DLL4Q9NR61 685 aa4.96□□□□□ -1.62
VRK1-202ENST00000553683 ATP23Q9Y6H3 246 aa4.96□□□□□ -1.62
VRK1-202ENST00000553683 TCRBV5S4A2TA0A5A2 114 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms