RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 CALM1P0DP23 149 aa5.84□□□□□ -1.47
VTI1B-202ENST00000553619 CALM2P0DP24 149 aa5.84□□□□□ -1.47
VTI1B-202ENST00000553619 CALM3P0DP25 149 aa5.84□□□□□ -1.47
VTI1B-202ENST00000553619 ACPPP15309 386 aa5.84□□□□□ -1.47
VTI1B-202ENST00000553619 CES1P23141 567 aa5.84□□□□□ -1.47
VTI1B-202ENST00000553619 PLCD1P51178 756 aa5.84□□□□□ -1.47
VTI1B-202ENST00000553619 RCAN1P53805 252 aa5.84□□□□□ -1.47
VTI1B-202ENST00000553619 TFAP4Q01664 338 aa5.84□□□□□ -1.47
VTI1B-202ENST00000553619 TCP10Q12799 353 aa5.84□□□□□ -1.47
VTI1B-202ENST00000553619 KIF4BQ2VIQ3 1234 aa5.84□□□□□ -1.47
VTI1B-202ENST00000553619 TMEM67Q5HYA8 995 aa5.84□□□□□ -1.47
VTI1B-202ENST00000553619 STOX1Q6ZVD7 989 aa5.84□□□□□ -1.47
VTI1B-202ENST00000553619 USP50Q70EL3 339 aaPredicted RBP5.84□□□□□ -1.47
VTI1B-202ENST00000553619 PNMA8AQ86V59 439 aaPredicted RBP5.84□□□□□ -1.47
VTI1B-202ENST00000553619 ATCAYQ86WG3 371 aa5.84□□□□□ -1.47
VTI1B-202ENST00000553619 DGKHQ86XP1 1220 aa5.84□□□□□ -1.47
VTI1B-202ENST00000553619 APOBEC3FQ8IUX4 373 aaKnown RBP5.84□□□□□ -1.47
VTI1B-202ENST00000553619 MB21D2Q8IYB1 491 aaPredicted RBP5.84□□□□□ -1.47
VTI1B-202ENST00000553619 CEP120Q8N960 986 aa5.84□□□□□ -1.47
VTI1B-202ENST00000553619 IGDCC4Q8TDY8 1250 aa5.84□□□□□ -1.47
VTI1B-202ENST00000553619 FOXD4L4Q8WXT5 416 aaPredicted RBP5.84□□□□□ -1.47
VTI1B-202ENST00000553619 BRF1Q92994 677 aa5.84□□□□□ -1.47
VTI1B-202ENST00000553619 PMEPA1Q969W9 287 aa5.84□□□□□ -1.47
VTI1B-202ENST00000553619 DCPSQ96C86 337 aaKnown RBP5.84□□□□□ -1.47
VTI1B-202ENST00000553619 TMX3Q96JJ7 454 aa5.84□□□□□ -1.47
VTI1B-202ENST00000553619 ELP3Q9H9T3 547 aa5.84□□□□□ -1.47
VTI1B-202ENST00000553619 XPO5Q9HAV4 1204 aaKnown RBP eCLIP5.84□□□□□ -1.47
VTI1B-202ENST00000553619 VEZTQ9HBM0 779 aa5.84□□□□□ -1.47
VTI1B-202ENST00000553619 GINM1Q9NU53 330 aa5.84□□□□□ -1.47
VTI1B-202ENST00000553619 SAP30BPQ9UHR5 308 aaKnown RBP5.84□□□□□ -1.47
VTI1B-202ENST00000553619 HACL1Q9UJ83 578 aa5.84□□□□□ -1.47
VTI1B-202ENST00000553619 NAP1L2Q9ULW6 460 aaPredicted RBP5.84□□□□□ -1.47
VTI1B-202ENST00000553619 ANGEL1Q9UNK9 670 aaKnown RBP5.84□□□□□ -1.47
VTI1B-202ENST00000553619 DDX52Q9Y2R4 599 aaKnown RBP eCLIP5.84□□□□□ -1.47
VTI1B-202ENST00000553619 PPP2R3BQ9Y5P8 575 aa5.84□□□□□ -1.47
VTI1B-202ENST00000553619 COL2A1P02458 1487 aaPredicted RBP5.83□□□□□ -1.48
VTI1B-202ENST00000553619 CDK5RAP2Q96SN8 1893 aa5.83□□□□□ -1.48
VTI1B-202ENST00000553619 LAMA4Q16363 1823 aa5.83□□□□□ -1.48
VTI1B-202ENST00000553619 FOCADQ5VW36 1801 aa5.83□□□□□ -1.48
VTI1B-202ENST00000553619 ROBO3Q96MS0 1386 aa5.83□□□□□ -1.48
VTI1B-202ENST00000553619 PITPNM2Q9BZ72 1349 aa5.83□□□□□ -1.48
VTI1B-202ENST00000553619 ZNF541Q9H0D2 1346 aa5.83□□□□□ -1.48
VTI1B-202ENST00000553619 CYP2D7A0A087X1C5 515 aa5.83□□□□□ -1.48
VTI1B-202ENST00000553619 CLRN2A0PK11 232 aa5.83□□□□□ -1.48
VTI1B-202ENST00000553619 CPLX1O14810 134 aa5.83□□□□□ -1.48
VTI1B-202ENST00000553619 DHX15O43143 795 aaKnown RBP5.83□□□□□ -1.48
VTI1B-202ENST00000553619 CDKL5O76039 1030 aa5.83□□□□□ -1.48
VTI1B-202ENST00000553619 MED26O95402 600 aa5.83□□□□□ -1.48
VTI1B-202ENST00000553619 CPA1P15085 419 aa5.83□□□□□ -1.48
VTI1B-202ENST00000553619 PRELPP51888 382 aa5.83□□□□□ -1.48
VTI1B-202ENST00000553619 EVCP57679 992 aa5.83□□□□□ -1.48
VTI1B-202ENST00000553619 GABPAQ06546 454 aa5.83□□□□□ -1.48
VTI1B-202ENST00000553619 EHHADHQ08426 723 aa5.83□□□□□ -1.48
VTI1B-202ENST00000553619 CUL4AQ13619 759 aa5.83□□□□□ -1.48
VTI1B-202ENST00000553619 TOB2Q14106 344 aaPredicted RBP5.83□□□□□ -1.48
VTI1B-202ENST00000553619 NBPF9Q3BBW0 867 aa5.83□□□□□ -1.48
VTI1B-202ENST00000553619 SUPT20HL1Q3ZLR7 823 aa5.83□□□□□ -1.48
VTI1B-202ENST00000553619 CERKLQ49MI3 558 aaPredicted RBP5.83□□□□□ -1.48
VTI1B-202ENST00000553619 TBC1D10BQ4KMP7 808 aaPredicted RBP5.83□□□□□ -1.48
VTI1B-202ENST00000553619 IFIT1BQ5T764 474 aaKnown RBP5.83□□□□□ -1.48
VTI1B-202ENST00000553619 LCE3BQ5TA77 95 aa5.83□□□□□ -1.48
VTI1B-202ENST00000553619 DCAF15Q66K64 600 aa5.83□□□□□ -1.48
VTI1B-202ENST00000553619 MCTP1Q6DN14 999 aa5.83□□□□□ -1.48
VTI1B-202ENST00000553619 CATIPQ7Z7H3 387 aa5.83□□□□□ -1.48
VTI1B-202ENST00000553619 SGMS1Q86VZ5 419 aa5.83□□□□□ -1.48
VTI1B-202ENST00000553619 METTL16Q86W50 562 aaKnown RBP5.83□□□□□ -1.48
VTI1B-202ENST00000553619 TBC1D10CQ8IV04 446 aa5.83□□□□□ -1.48
VTI1B-202ENST00000553619 STK11IPQ8N1F8 1099 aa5.83□□□□□ -1.48
VTI1B-202ENST00000553619 GTF3C2Q8WUA4 911 aaPredicted RBP5.83□□□□□ -1.48
VTI1B-202ENST00000553619 ANKS1AQ92625 1134 aa5.83□□□□□ -1.48
VTI1B-202ENST00000553619 POP1Q99575 1024 aaKnown RBP5.83□□□□□ -1.48
VTI1B-202ENST00000553619 LLPHQ9BRT6 129 aaKnown RBP5.83□□□□□ -1.48
VTI1B-202ENST00000553619 KAT14Q9H8E8 782 aa5.83□□□□□ -1.48
VTI1B-202ENST00000553619 DDX4Q9NQI0 724 aaKnown RBP5.83□□□□□ -1.48
VTI1B-202ENST00000553619 CNTN3Q9P232 1028 aa5.83□□□□□ -1.48
VTI1B-202ENST00000553619 STOML1Q9UBI4 398 aa5.83□□□□□ -1.48
VTI1B-202ENST00000553619 SMC3Q9UQE7 1217 aa5.83□□□□□ -1.48
VTI1B-202ENST00000553619 SLC12A7Q9Y666 1083 aa5.83□□□□□ -1.48
VTI1B-202ENST00000553619 NAV1Q8NEY1 1877 aa5.83□□□□□ -1.48
VTI1B-202ENST00000553619 ATRNL1Q5VV63 1379 aa5.82□□□□□ -1.48
VTI1B-202ENST00000553619 MYH8P13535 1937 aa5.82□□□□□ -1.48
VTI1B-202ENST00000553619 NEDD4P46934 1319 aa5.82□□□□□ -1.48
VTI1B-202ENST00000553619 KLF18A0A0U1RQI7 1052 aa5.82□□□□□ -1.48
VTI1B-202ENST00000553619 DDTLA6NHG4 134 aaPredicted RBP5.82□□□□□ -1.48
VTI1B-202ENST00000553619 SH2B2O14492 632 aaPredicted RBP5.82□□□□□ -1.48
VTI1B-202ENST00000553619 GSC2O15499 205 aa5.82□□□□□ -1.48
VTI1B-202ENST00000553619 ZBTB43O43298 467 aa5.82□□□□□ -1.48
VTI1B-202ENST00000553619 PFKFB2O60825 505 aa5.82□□□□□ -1.48
VTI1B-202ENST00000553619 PRDM1O75626 825 aa5.82□□□□□ -1.48
VTI1B-202ENST00000553619 FAM13AO94988 1023 aa5.82□□□□□ -1.48
VTI1B-202ENST00000553619 ABL1P00519 1130 aa5.82□□□□□ -1.48
VTI1B-202ENST00000553619 CYP2D6P10635 497 aa5.82□□□□□ -1.48
VTI1B-202ENST00000553619 TOP1P11387 765 aaKnown RBP5.82□□□□□ -1.48
VTI1B-202ENST00000553619 PDCP20941 246 aa5.82□□□□□ -1.48
VTI1B-202ENST00000553619 MPSTP25325 297 aa5.82□□□□□ -1.48
VTI1B-202ENST00000553619 MZF1P28698 734 aaPredicted RBP5.82□□□□□ -1.48
VTI1B-202ENST00000553619 PDIA3P30101 505 aaKnown RBP5.82□□□□□ -1.48
VTI1B-202ENST00000553619 KIF5BP33176 963 aa5.82□□□□□ -1.48
VTI1B-202ENST00000553619 EPHX2P34913 555 aa5.82□□□□□ -1.48
VTI1B-202ENST00000553619 NF2P35240 595 aa5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms