RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 DHX36Q9H2U1 1008 aaKnown RBP14.56□□□□□ -0.08
LDLR-203ENST00000535915 SH2D4AQ9H788 454 aa14.56□□□□□ -0.08
LDLR-203ENST00000535915 KANSL2Q9H9L4 492 aa14.56□□□□□ -0.08
LDLR-203ENST00000535915 KRT18P05783 430 aaKnown RBP14.55□□□□□ -0.08
LDLR-203ENST00000535915 PDE6BP35913 854 aa14.55□□□□□ -0.08
LDLR-203ENST00000535915 STAT3P40763 770 aa14.55□□□□□ -0.08
LDLR-203ENST00000535915 HERC4Q5GLZ8 1057 aaPredicted RBP14.55□□□□□ -0.08
LDLR-203ENST00000535915 MKL1Q969V6 931 aa14.55□□□□□ -0.08
LDLR-203ENST00000535915 DRC1Q96MC2 740 aa14.55□□□□□ -0.08
LDLR-203ENST00000535915 QTRT2Q9H974 415 aaKnown RBP14.55□□□□□ -0.08
LDLR-203ENST00000535915 MLXIPQ9HAP2 919 aa14.55□□□□□ -0.08
LDLR-203ENST00000535915 KCNMB3Q9NPA1 279 aa14.55□□□□□ -0.08
LDLR-203ENST00000535915 PI4KBQ9UBF8 816 aa14.55□□□□□ -0.08
LDLR-203ENST00000535915 JRKLQ9Y4A0 524 aa14.55□□□□□ -0.08
LDLR-203ENST00000535915 CAPN6Q9Y6Q1 641 aa14.55□□□□□ -0.08
LDLR-203ENST00000535915 SCN9AQ15858 1988 aa14.55□□□□□ -0.08
LDLR-203ENST00000535915 MOCS3O95396 460 aa14.55□□□□□ -0.08
LDLR-203ENST00000535915 LCA5LO95447 670 aa14.55□□□□□ -0.08
LDLR-203ENST00000535915 MCM3P25205 808 aa14.55□□□□□ -0.08
LDLR-203ENST00000535915 KCNMA1Q12791 1236 aa14.55□□□□□ -0.08
LDLR-203ENST00000535915 PDXDC1Q6P996 788 aa14.55□□□□□ -0.08
LDLR-203ENST00000535915 KRT27Q7Z3Y8 459 aa14.55□□□□□ -0.08
LDLR-203ENST00000535915 PODNQ7Z5L7 613 aa14.55□□□□□ -0.08
LDLR-203ENST00000535915 ZHX3Q9H4I2 956 aa14.55□□□□□ -0.08
LDLR-203ENST00000535915 NLRC4Q9NPP4 1024 aa14.55□□□□□ -0.08
LDLR-203ENST00000535915 NYAP2Q9P242 653 aa14.55□□□□□ -0.08
LDLR-203ENST00000535915 ATAD5Q96QE3 1844 aa14.54□□□□□ -0.08
LDLR-203ENST00000535915 SNAP25P60880 206 aa14.54□□□□□ -0.08
LDLR-203ENST00000535915 SLFN12Q8IYM2 578 aa14.54□□□□□ -0.08
LDLR-203ENST00000535915 ZNF622Q969S3 477 aaKnown RBP eCLIP14.54□□□□□ -0.083e-9■□□□□ 10.9
LDLR-203ENST00000535915 PDE2AO00408 941 aaPredicted RBP14.54□□□□□ -0.08
LDLR-203ENST00000535915 MED24O75448 989 aa14.54□□□□□ -0.08
LDLR-203ENST00000535915 MAGEA1P43355 309 aa14.54□□□□□ -0.08
LDLR-203ENST00000535915 ICA1Q05084 483 aa14.54□□□□□ -0.08
LDLR-203ENST00000535915 TDRD12Q587J7 1177 aaKnown RBP14.54□□□□□ -0.08
LDLR-203ENST00000535915 MSL3Q8N5Y2 521 aaKnown RBP14.54□□□□□ -0.08
LDLR-203ENST00000535915 MASTLQ96GX5 879 aa14.54□□□□□ -0.08
LDLR-203ENST00000535915 CEP63Q96MT8 703 aa14.54□□□□□ -0.08
LDLR-203ENST00000535915 EDEM3Q9BZQ6 932 aa14.54□□□□□ -0.08
LDLR-203ENST00000535915 ADAM21Q9UKJ8 722 aa14.54□□□□□ -0.08
LDLR-203ENST00000535915 SNX12Q9UMY4 172 aa14.54□□□□□ -0.08
LDLR-203ENST00000535915 CYP3A7-CYP3A51PA0A087WV96 503 aa14.53□□□□□ -0.08
LDLR-203ENST00000535915 POTEFA5A3E0 1075 aa14.53□□□□□ -0.08
LDLR-203ENST00000535915 MEIS2O14770 477 aa14.53□□□□□ -0.08
LDLR-203ENST00000535915 POTEIP0CG38 1075 aa14.53□□□□□ -0.08
LDLR-203ENST00000535915 CYP11B2P19099 503 aa14.53□□□□□ -0.08
LDLR-203ENST00000535915 CYP3A7P24462 503 aa14.53□□□□□ -0.08
LDLR-203ENST00000535915 ARHGAP4P98171 946 aa14.53□□□□□ -0.08
LDLR-203ENST00000535915 GFPT1Q06210 699 aaPredicted RBP14.53□□□□□ -0.08
LDLR-203ENST00000535915 SLC20A2Q08357 652 aa14.53□□□□□ -0.08
LDLR-203ENST00000535915 IKQ13123 557 aaPredicted RBP14.53□□□□□ -0.08
LDLR-203ENST00000535915 AP3B2Q13367 1082 aa14.53□□□□□ -0.08
LDLR-203ENST00000535915 USH1GQ495M9 461 aa14.53□□□□□ -0.08
LDLR-203ENST00000535915 PRR16Q569H4 304 aa14.53□□□□□ -0.08
LDLR-203ENST00000535915 IQCEQ6IPM2 695 aa14.53□□□□□ -0.08
LDLR-203ENST00000535915 POTEGQ6S5H5 508 aa14.53□□□□□ -0.08
LDLR-203ENST00000535915 POTEEQ6S8J3 1075 aa14.53□□□□□ -0.08
LDLR-203ENST00000535915 COL23A1Q86Y22 540 aaPredicted RBP14.53□□□□□ -0.08
LDLR-203ENST00000535915 ALS2CR12Q96Q35 445 aa14.53□□□□□ -0.08
LDLR-203ENST00000535915 EMILIN3Q9NT22 766 aa14.53□□□□□ -0.08
LDLR-203ENST00000535915 VPS18Q9P253 973 aa14.53□□□□□ -0.08
LDLR-203ENST00000535915 FAM198AQ9UFP1 575 aa14.53□□□□□ -0.08
LDLR-203ENST00000535915 PCDHA2Q9Y5H9 948 aa14.53□□□□□ -0.08
LDLR-203ENST00000535915 TARSL2A2RTX5 802 aaKnown RBP14.53□□□□□ -0.08
LDLR-203ENST00000535915 LRRIQ3A6PVS8 624 aaPredicted RBP14.53□□□□□ -0.08
LDLR-203ENST00000535915 N4BP1O75113 896 aaKnown RBP14.53□□□□□ -0.08
LDLR-203ENST00000535915 GNA14O95837 355 aa14.53□□□□□ -0.08
LDLR-203ENST00000535915 C2orf54Q08AI8 447 aa14.53□□□□□ -0.08
LDLR-203ENST00000535915 MAP9Q49MG5 647 aa14.53□□□□□ -0.08
LDLR-203ENST00000535915 HAUS3Q68CZ6 603 aa14.53□□□□□ -0.08
LDLR-203ENST00000535915 SCFD1Q8WVM8 642 aa14.53□□□□□ -0.08
LDLR-203ENST00000535915 CCDC102AQ96A19 550 aa14.53□□□□□ -0.08
LDLR-203ENST00000535915 AMNQ9BXJ7 453 aa14.53□□□□□ -0.08
LDLR-203ENST00000535915 ACBD3Q9H3P7 528 aa14.53□□□□□ -0.08
LDLR-203ENST00000535915 CEP72Q9P209 647 aa14.53□□□□□ -0.08
LDLR-203ENST00000535915 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.53□□□□□ -0.08
LDLR-203ENST00000535915 SMCHD1A6NHR9 2005 aa14.53□□□□□ -0.08
LDLR-203ENST00000535915 F5H6K3 240 aa14.52□□□□□ -0.08
LDLR-203ENST00000535915 GDF11O95390 407 aa14.52□□□□□ -0.08
LDLR-203ENST00000535915 KLRC3Q07444 240 aa14.52□□□□□ -0.08
LDLR-203ENST00000535915 HSP90B2PQ58FF3 399 aa14.52□□□□□ -0.08
LDLR-203ENST00000535915 SH3BP5LQ7L8J4 393 aa14.52□□□□□ -0.08
LDLR-203ENST00000535915 TXLNBQ8N3L3 684 aa14.52□□□□□ -0.08
LDLR-203ENST00000535915 CRACR2AQ9BSW2 395 aa14.52□□□□□ -0.08
LDLR-203ENST00000535915 LSM14BQ9BX40 385 aaKnown RBP14.52□□□□□ -0.08
LDLR-203ENST00000535915 ZMYND10O75800 440 aa14.52□□□□□ -0.09
LDLR-203ENST00000535915 MMP10P09238 476 aa14.52□□□□□ -0.09
LDLR-203ENST00000535915 TNNT3P45378 269 aaPredicted RBP14.52□□□□□ -0.09
LDLR-203ENST00000535915 SLC9C1Q4G0N8 1177 aa14.52□□□□□ -0.09
LDLR-203ENST00000535915 FAM83BQ5T0W9 1011 aa14.52□□□□□ -0.09
LDLR-203ENST00000535915 TMEM179Q6ZVK1 233 aa14.52□□□□□ -0.09
LDLR-203ENST00000535915 SIAH1Q8IUQ4 282 aa14.52□□□□□ -0.09
LDLR-203ENST00000535915 ANKRD13CQ8N6S4 541 aa14.52□□□□□ -0.09
LDLR-203ENST00000535915 MBOAT7Q96N66 472 aa14.52□□□□□ -0.09
LDLR-203ENST00000535915 IDI2Q9BXS1 227 aa14.52□□□□□ -0.09
LDLR-203ENST00000535915 SSU72P8A0A1W2PR75 194 aa14.51□□□□□ -0.09
LDLR-203ENST00000535915 SPDYE3A6NKU9 549 aa14.51□□□□□ -0.09
LDLR-203ENST00000535915 SLC26A4O43511 780 aa14.51□□□□□ -0.09
LDLR-203ENST00000535915 EPS15P42566 896 aa14.51□□□□□ -0.09
LDLR-203ENST00000535915 SLC12A3P55017 1021 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms