RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 DTLQ9NZJ0 730 aa5.52□□□□□ -1.53
CD44-233ENST00000531141 COQ6Q9Y2Z9 468 aa5.52□□□□□ -1.53
CD44-233ENST00000531141 PCDHA5Q9Y5H7 936 aa5.52□□□□□ -1.53
CD44-233ENST00000531141 NFIBO00712 420 aa5.51□□□□□ -1.53
CD44-233ENST00000531141 NKRFO15226 690 aaKnown RBP eCLIP5.51□□□□□ -1.53
CD44-233ENST00000531141 ASGR2P07307 311 aa5.51□□□□□ -1.53
CD44-233ENST00000531141 COL6A2P12110 1019 aa5.51□□□□□ -1.53
CD44-233ENST00000531141 NCAM1P13591 858 aa5.51□□□□□ -1.53
CD44-233ENST00000531141 PDE6AP16499 860 aa5.51□□□□□ -1.53
CD44-233ENST00000531141 POU3F2P20265 443 aaPredicted RBP5.51□□□□□ -1.53
CD44-233ENST00000531141 EPHB3P54753 998 aa5.51□□□□□ -1.53
CD44-233ENST00000531141 EPHA5P54756 1037 aa5.51□□□□□ -1.53
CD44-233ENST00000531141 LACTBP83111 547 aaPredicted RBP5.51□□□□□ -1.53
CD44-233ENST00000531141 FZD5Q13467 585 aa5.51□□□□□ -1.53
CD44-233ENST00000531141 C21orf62-AS1Q17RA5 79 aa5.51□□□□□ -1.53
CD44-233ENST00000531141 ABHD17CQ6PCB6 329 aa5.51□□□□□ -1.53
CD44-233ENST00000531141 KCTD1Q719H9 257 aa5.51□□□□□ -1.53
CD44-233ENST00000531141 PNPLA5Q7Z6Z6 429 aaPredicted RBP5.51□□□□□ -1.53
CD44-233ENST00000531141 ZC3H18Q86VM9 953 aaKnown RBP5.51□□□□□ -1.53
CD44-233ENST00000531141 NLGN4XQ8N0W4 816 aa5.51□□□□□ -1.53
CD44-233ENST00000531141 IGSF22Q8N9C0 903 aa5.51□□□□□ -1.53
CD44-233ENST00000531141 KRTAP4-9Q9BYQ8 210 aa5.51□□□□□ -1.53
CD44-233ENST00000531141 PDGFDQ9GZP0 370 aaPredicted RBP5.51□□□□□ -1.53
CD44-233ENST00000531141 KCNK12Q9HB15 430 aa5.51□□□□□ -1.53
CD44-233ENST00000531141 GCM1Q9NP62 436 aa5.51□□□□□ -1.53
CD44-233ENST00000531141 NGRNQ9NPE2 291 aaKnown RBP5.51□□□□□ -1.53
CD44-233ENST00000531141 SAMD15Q9P1V8 674 aa5.51□□□□□ -1.53
CD44-233ENST00000531141 TCAF2A6NFQ2 919 aa5.5□□□□□ -1.53
CD44-233ENST00000531141 ETV2O00321 342 aaPredicted RBP5.5□□□□□ -1.53
CD44-233ENST00000531141 SLC27A2O14975 620 aa5.5□□□□□ -1.53
CD44-233ENST00000531141 GLRX3O76003 335 aaKnown RBP5.5□□□□□ -1.53
CD44-233ENST00000531141 TMEM253P0C7T8 217 aa5.5□□□□□ -1.53
CD44-233ENST00000531141 JMJD7P0C870 316 aa5.5□□□□□ -1.53
CD44-233ENST00000531141 KCNA6P17658 529 aa5.5□□□□□ -1.53
CD44-233ENST00000531141 IGFBP6P24592 240 aaPredicted RBP5.5□□□□□ -1.53
CD44-233ENST00000531141 GJA4P35212 333 aa5.5□□□□□ -1.53
CD44-233ENST00000531141 GYS2P54840 703 aa5.5□□□□□ -1.53
CD44-233ENST00000531141 CACNB2Q08289 660 aaPredicted RBP5.5□□□□□ -1.53
CD44-233ENST00000531141 TUSC3Q13454 348 aa5.5□□□□□ -1.53
CD44-233ENST00000531141 PKN1Q16512 942 aa5.5□□□□□ -1.53
CD44-233ENST00000531141 ZNF648Q5T619 568 aaPredicted RBP5.5□□□□□ -1.53
CD44-233ENST00000531141 HHIPL2Q6UWX4 724 aa5.5□□□□□ -1.53
CD44-233ENST00000531141 ARHGAP36Q6ZRI8 547 aa5.5□□□□□ -1.53
CD44-233ENST00000531141 UBE2R2Q712K3 238 aaPredicted RBP5.5□□□□□ -1.53
CD44-233ENST00000531141 B3GNT8Q7Z7M8 397 aa5.5□□□□□ -1.53
CD44-233ENST00000531141 IGDCC3Q8IVU1 814 aa5.5□□□□□ -1.53
CD44-233ENST00000531141 DHX37Q8IY37 1157 aaKnown RBP5.5□□□□□ -1.53
CD44-233ENST00000531141 CHST14Q8NCH0 376 aa5.5□□□□□ -1.53
CD44-233ENST00000531141 DDX11Q96FC9 970 aa5.5□□□□□ -1.53
CD44-233ENST00000531141 SIGLEC10Q96LC7 697 aa5.5□□□□□ -1.53
CD44-233ENST00000531141 BCAS3Q9H6U6 928 aa5.5□□□□□ -1.53
CD44-233ENST00000531141 SMURF1Q9HCE7 757 aa5.5□□□□□ -1.53
CD44-233ENST00000531141 PCDH18Q9HCL0 1135 aa5.5□□□□□ -1.53
CD44-233ENST00000531141 PLA2G2DQ9UNK4 145 aa5.5□□□□□ -1.53
CD44-233ENST00000531141 FAN1Q9Y2M0 1017 aa5.5□□□□□ -1.53
CD44-233ENST00000531141 PRKAB1Q9Y478 270 aa5.5□□□□□ -1.53
CD44-233ENST00000531141 TCRBV5S4A2TA0A5A2 114 aa5.49□□□□□ -1.53
CD44-233ENST00000531141 M0R2C6 588 aa5.49□□□□□ -1.53
CD44-233ENST00000531141 MAN2B1O00754 1011 aa5.49□□□□□ -1.53
CD44-233ENST00000531141 CYP2C8P10632 490 aa5.49□□□□□ -1.53
CD44-233ENST00000531141 KRT15P19012 456 aa5.49□□□□□ -1.53
CD44-233ENST00000531141 CANXP27824 592 aaKnown RBP5.49□□□□□ -1.53
CD44-233ENST00000531141 CFAP100Q494V2 611 aa5.49□□□□□ -1.53
CD44-233ENST00000531141 PIK3R6Q5UE93 754 aa5.49□□□□□ -1.53
CD44-233ENST00000531141 EP400NLQ6ZTU2 488 aa5.49□□□□□ -1.53
CD44-233ENST00000531141 OVCH1Q7RTY7 1134 aa5.49□□□□□ -1.53
CD44-233ENST00000531141 PTRH1Q86Y79 214 aaKnown RBP5.49□□□□□ -1.53
CD44-233ENST00000531141 AHI1Q8N157 1196 aa5.49□□□□□ -1.53
CD44-233ENST00000531141 ARRDC4Q8NCT1 418 aa5.49□□□□□ -1.53
CD44-233ENST00000531141 SH3RF2Q8TEC5 729 aa5.49□□□□□ -1.53
CD44-233ENST00000531141 KCNN1Q92952 543 aa5.49□□□□□ -1.53
CD44-233ENST00000531141 TOE1Q96GM8 510 aaKnown RBP5.49□□□□□ -1.53
CD44-233ENST00000531141 ORAI3Q9BRQ5 295 aa5.49□□□□□ -1.53
CD44-233ENST00000531141 TARS2Q9BW92 718 aaKnown RBP5.49□□□□□ -1.53
CD44-233ENST00000531141 BOCQ9BWV1 1114 aa5.49□□□□□ -1.53
CD44-233ENST00000531141 SGPP1Q9BX95 441 aa5.49□□□□□ -1.53
CD44-233ENST00000531141 CD244Q9BZW8 370 aa5.49□□□□□ -1.53
CD44-233ENST00000531141 CABP5Q9NP86 173 aa5.49□□□□□ -1.53
CD44-233ENST00000531141 CD320Q9NPF0 282 aa5.49□□□□□ -1.53
CD44-233ENST00000531141 MAPRE3Q9UPY8 281 aa5.49□□□□□ -1.53
CD44-233ENST00000531141 IRAK3Q9Y616 596 aa5.49□□□□□ -1.53
CD44-233ENST00000531141 ATP23Q9Y6H3 246 aa5.49□□□□□ -1.53
CD44-233ENST00000531141 CADPSQ9ULU8 1353 aa5.49□□□□□ -1.53
CD44-233ENST00000531141 GSG1L2A8MUP6 293 aa5.48□□□□□ -1.53
CD44-233ENST00000531141 CBX4O00257 560 aa5.48□□□□□ -1.53
CD44-233ENST00000531141 RFXAPO00287 272 aa5.48□□□□□ -1.53
CD44-233ENST00000531141 BUB1BO60566 1050 aaPredicted RBP5.48□□□□□ -1.53
CD44-233ENST00000531141 PDE8AO60658 829 aa5.48□□□□□ -1.53
CD44-233ENST00000531141 KPNA6O60684 536 aa5.48□□□□□ -1.53
CD44-233ENST00000531141 CLASP2O75122 1294 aaKnown RBP5.48□□□□□ -1.53
CD44-233ENST00000531141 AMY2AP04746 511 aa5.48□□□□□ -1.53
CD44-233ENST00000531141 C8BP07358 591 aa5.48□□□□□ -1.53
CD44-233ENST00000531141 AMY2BP19961 511 aa5.48□□□□□ -1.53
CD44-233ENST00000531141 MECP2P51608 486 aaKnown RBP5.48□□□□□ -1.53
CD44-233ENST00000531141 NCKAP1LP55160 1127 aa5.48□□□□□ -1.53
CD44-233ENST00000531141 JAM2P57087 298 aa5.48□□□□□ -1.53
CD44-233ENST00000531141 ARHGAP44Q17R89 818 aa5.48□□□□□ -1.53
CD44-233ENST00000531141 CDCA2Q69YH5 1023 aaPredicted RBP5.48□□□□□ -1.53
CD44-233ENST00000531141 CNNM4Q6P4Q7 775 aa5.48□□□□□ -1.53
CD44-233ENST00000531141 OTOP1Q7RTM1 612 aa5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms