RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 AEBP2Q6ZN18 517 aaPredicted RBP19.79■□□□□ 0.76
CD44-233ENST00000531141 CHIC1Q5VXU3 224 aa19.32■□□□□ 0.68
CD44-233ENST00000531141 SENP3Q9H4L4 574 aaPredicted RBP16.97■□□□□ 0.31
CD44-233ENST00000531141 PHF23Q9BUL5 403 aaPredicted RBP16.94■□□□□ 0.3
CD44-233ENST00000531141 FOXD1Q16676 465 aa15.84■□□□□ 0.13
CD44-233ENST00000531141 PLPPR3Q6T4P5 718 aa15.77■□□□□ 0.12
CD44-233ENST00000531141 POTEDQ86YR6 584 aa15.29■□□□□ 0.04
CD44-233ENST00000531141 MSH5O43196 834 aa15□□□□□ -0.01
CD44-233ENST00000531141 ADRA2BP18089 450 aa14.89□□□□□ -0.03
CD44-233ENST00000531141 PPP6R1Q9UPN7 881 aa14.88□□□□□ -0.03
CD44-233ENST00000531141 PIAS4Q8N2W9 510 aaPredicted RBP14.72□□□□□ -0.05
CD44-233ENST00000531141 PPP4R3CPQ6ZMV5 832 aa13.87□□□□□ -0.19
CD44-233ENST00000531141 SCAF1Q9H7N4 1312 aaKnown RBP13.71□□□□□ -0.21
CD44-233ENST00000531141 KCNA4P22459 653 aa13.67□□□□□ -0.22
CD44-233ENST00000531141 NCBP3Q53F19 620 aaKnown RBP13.59□□□□□ -0.23
CD44-233ENST00000531141 CNKSR2Q8WXI2 1034 aa13.48□□□□□ -0.25
CD44-233ENST00000531141 MAPK8IP2Q13387 824 aaPredicted RBP13.44□□□□□ -0.26
CD44-233ENST00000531141 DMRT2Q9Y5R5 561 aa13.39□□□□□ -0.27
CD44-233ENST00000531141 NPM3O75607 178 aaKnown RBP13.35□□□□□ -0.27
CD44-233ENST00000531141 RNF216Q9NWF9 866 aaPredicted RBP13.2□□□□□ -0.3
CD44-233ENST00000531141 HOXD11P31277 338 aaPredicted RBP13.1□□□□□ -0.31
CD44-233ENST00000531141 CACNB1Q02641 598 aaPredicted RBP13.1□□□□□ -0.31
CD44-233ENST00000531141 SLC4A1APQ9BWU0 796 aaKnown RBP13.08□□□□□ -0.32
CD44-233ENST00000531141 DNAJC5BQ9UF47 199 aa13.03□□□□□ -0.32
CD44-233ENST00000531141 DCAF8L1A6NGE4 600 aa12.85□□□□□ -0.35
CD44-233ENST00000531141 EHMT2Q96KQ7 1210 aa12.82□□□□□ -0.36
CD44-233ENST00000531141 RNF39Q9H2S5 420 aa12.76□□□□□ -0.37
CD44-233ENST00000531141 FOXD4L1Q9NU39 408 aa12.61□□□□□ -0.39
CD44-233ENST00000531141 CSRNP3Q8WYN3 585 aa12.6□□□□□ -0.39
CD44-233ENST00000531141 ZBTB22O15209 634 aa12.58□□□□□ -0.4
CD44-233ENST00000531141 SLC4A2P04920 1241 aa12.56□□□□□ -0.4
CD44-233ENST00000531141 C1QBPQ07021 282 aaKnown RBP12.55□□□□□ -0.4
CD44-233ENST00000531141 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.47□□□□□ -0.41
CD44-233ENST00000531141 MYCNP04198 464 aaPredicted RBP12.38□□□□□ -0.43
CD44-233ENST00000531141 U3KPZ7 1027 aaPredicted RBP12.29□□□□□ -0.44
CD44-233ENST00000531141 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.23□□□□□ -0.45
CD44-233ENST00000531141 HNRNPUL2Q1KMD3 747 aaKnown RBP12.23□□□□□ -0.45
CD44-233ENST00000531141 SAMD1Q6SPF0 538 aaPredicted RBP12.19□□□□□ -0.46
CD44-233ENST00000531141 ATXN8OSP0DMR3 200 aa12.17□□□□□ -0.46
CD44-233ENST00000531141 APLP2Q06481 763 aa12.1□□□□□ -0.47
CD44-233ENST00000531141 ATF5Q9Y2D1 282 aaPredicted RBP11.95□□□□□ -0.5
CD44-233ENST00000531141 POTEHQ6S545 545 aa11.91□□□□□ -0.5
CD44-233ENST00000531141 ZNF219Q9P2Y4 722 aaPredicted RBP11.88□□□□□ -0.51
CD44-233ENST00000531141 SPINK5Q9NQ38 1064 aaPredicted RBP11.87□□□□□ -0.51
CD44-233ENST00000531141 CAPN15O75808 1086 aa11.84□□□□□ -0.51
CD44-233ENST00000531141 DSG3P32926 999 aa11.81□□□□□ -0.52
CD44-233ENST00000531141 TRHP20396 242 aaPredicted RBP11.8□□□□□ -0.52
CD44-233ENST00000531141 POLA2Q14181 598 aa11.63□□□□□ -0.55
CD44-233ENST00000531141 ABCB7O75027 752 aa11.61□□□□□ -0.55
CD44-233ENST00000531141 ZBTB12Q9Y330 459 aaPredicted RBP11.56□□□□□ -0.56
CD44-233ENST00000531141 FBLN2P98095 1184 aa11.53□□□□□ -0.56
CD44-233ENST00000531141 MKRN4PQ13434 485 aaPredicted RBP11.47□□□□□ -0.57
CD44-233ENST00000531141 FKBP8Q14318 412 aa11.41□□□□□ -0.58
CD44-233ENST00000531141 RBM42Q9BTD8 480 aaKnown RBP11.3□□□□□ -0.6
CD44-233ENST00000531141 SPDYE4A6NLX3 237 aa11.29□□□□□ -0.6
CD44-233ENST00000531141 OSCARQ8IYS5 282 aa11.27□□□□□ -0.61
CD44-233ENST00000531141 SPDYE2BA6NHP3 402 aa11.22□□□□□ -0.61
CD44-233ENST00000531141 SPDYE6P0CI01 402 aa11.22□□□□□ -0.61
CD44-233ENST00000531141 SPDYE2Q495Y8 402 aa11.22□□□□□ -0.61
CD44-233ENST00000531141 CHRDL2Q6WN34 429 aa11.19□□□□□ -0.62
CD44-233ENST00000531141 PROM2Q8N271 834 aa11.16□□□□□ -0.62
CD44-233ENST00000531141 ZNF692Q9BU19 519 aaPredicted RBP11.14□□□□□ -0.63
CD44-233ENST00000531141 SSUH2Q9Y2M2 353 aa11.14□□□□□ -0.63
CD44-233ENST00000531141 FBXO3Q9UK99 471 aa11.02□□□□□ -0.65
CD44-233ENST00000531141 PABPN1Q86U42 306 aaKnown RBP eCLIP11.01□□□□□ -0.65
CD44-233ENST00000531141 AKT1S1Q96B36 256 aa10.99□□□□□ -0.65
CD44-233ENST00000531141 SP7Q8TDD2 431 aaPredicted RBP10.98□□□□□ -0.65
CD44-233ENST00000531141 STAG3Q9UJ98 1225 aa10.9□□□□□ -0.66
CD44-233ENST00000531141 VASPP50552 380 aaPredicted RBP10.86□□□□□ -0.67
CD44-233ENST00000531141 REM2Q8IYK8 340 aaPredicted RBP10.85□□□□□ -0.67
CD44-233ENST00000531141 SPDYE1Q8NFV5 336 aaPredicted RBP10.85□□□□□ -0.67
CD44-233ENST00000531141 PIP4P2Q8N4L2 257 aa10.84□□□□□ -0.67
CD44-233ENST00000531141 HAX1O00165 279 aa10.74□□□□□ -0.69
CD44-233ENST00000531141 PITPNM1O00562 1244 aa10.74□□□□□ -0.69
CD44-233ENST00000531141 CLEC11AQ9Y240 323 aa10.74□□□□□ -0.69
CD44-233ENST00000531141 FXR2P51116 673 aaKnown RBP eCLIP10.71□□□□□ -0.69
CD44-233ENST00000531141 PLCD3Q8N3E9 789 aa10.7□□□□□ -0.7
CD44-233ENST00000531141 PRR29P0C7W0 189 aa10.68□□□□□ -0.7
CD44-233ENST00000531141 AMER1Q5JTC6 1135 aaPredicted RBP10.68□□□□□ -0.7
CD44-233ENST00000531141 PLEKHG5O94827 1062 aa10.67□□□□□ -0.7
CD44-233ENST00000531141 IFNLR1Q8IU57 520 aaPredicted RBP10.66□□□□□ -0.7
CD44-233ENST00000531141 MIER1Q8N108 512 aa10.65□□□□□ -0.7
CD44-233ENST00000531141 ZBTB47Q9UFB7 747 aaPredicted RBP10.63□□□□□ -0.71
CD44-233ENST00000531141 KLHL34Q8N239 644 aa10.6□□□□□ -0.71
CD44-233ENST00000531141 RTN4Q9NQC3 1192 aaKnown RBP10.58□□□□□ -0.72
CD44-233ENST00000531141 CREBZFQ9NS37 354 aa10.57□□□□□ -0.72
CD44-233ENST00000531141 EVX2Q03828 476 aa10.56□□□□□ -0.72
CD44-233ENST00000531141 SPOCK2Q92563 424 aa10.56□□□□□ -0.72
CD44-233ENST00000531141 MNX1P50219 401 aaPredicted RBP10.47□□□□□ -0.73
CD44-233ENST00000531141 PRKAR2AP13861 404 aaKnown RBP10.46□□□□□ -0.73
CD44-233ENST00000531141 CHADLQ6NUI6 762 aa10.45□□□□□ -0.74
CD44-233ENST00000531141 NPM1P06748 294 aaKnown RBP eCLIP10.44□□□□□ -0.74
CD44-233ENST00000531141 FARP1Q9Y4F1 1045 aaPredicted RBP10.41□□□□□ -0.74
CD44-233ENST00000531141 NUBP1P53384 320 aa10.4□□□□□ -0.74
CD44-233ENST00000531141 C19orf67A6NJJ6 358 aa10.38□□□□□ -0.75
CD44-233ENST00000531141 PKD2Q13563 968 aa10.36□□□□□ -0.75
CD44-233ENST00000531141 GSE1Q14687 1217 aa10.36□□□□□ -0.75
CD44-233ENST00000531141 FAM212AQ96EL1 285 aa10.36□□□□□ -0.75
CD44-233ENST00000531141 CIZ1Q9ULV3 898 aaPredicted RBP10.34□□□□□ -0.75
CD44-233ENST00000531141 RASEFQ8IZ41 740 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms