RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 FAM26EQ8N5C1 309 aa7.01□□□□□ -1.29
CD44-223ENST00000526553 LINC00482Q8N8I6 264 aa7.01□□□□□ -1.29
CD44-223ENST00000526553 TOE1Q96GM8 510 aaKnown RBP7.01□□□□□ -1.29
CD44-223ENST00000526553 RNPC3Q96LT9 517 aaKnown RBP7.01□□□□□ -1.29
CD44-223ENST00000526553 MAGEB10Q96LZ2 347 aaPredicted RBP7.01□□□□□ -1.29
CD44-223ENST00000526553 HSPBP1Q9NZL4 362 aa7.01□□□□□ -1.29
CD44-223ENST00000526553 DSEQ9UL01 958 aa7.01□□□□□ -1.29
CD44-223ENST00000526553 STAT5AP42229 794 aa7□□□□□ -1.29
CD44-223ENST00000526553 EPHA5P54756 1037 aa7□□□□□ -1.29
CD44-223ENST00000526553 VWA3BQ502W6 1294 aa7□□□□□ -1.29
CD44-223ENST00000526553 FAM47CQ5HY64 1035 aa7□□□□□ -1.29
CD44-223ENST00000526553 SPOCD1Q6ZMY3 1216 aa7□□□□□ -1.29
CD44-223ENST00000526553 C16orf59Q7L2K0 433 aa7□□□□□ -1.29
CD44-223ENST00000526553 SAPCD2Q86UD0 394 aa7□□□□□ -1.29
CD44-223ENST00000526553 ZC3H7AQ8IWR0 971 aaKnown RBP7□□□□□ -1.29
CD44-223ENST00000526553 SYNPOQ8N3V7 929 aa7□□□□□ -1.29
CD44-223ENST00000526553 LINC01356Q8N9X3 169 aa7□□□□□ -1.29
CD44-223ENST00000526553 SCLYQ96I15 445 aa7□□□□□ -1.29
CD44-223ENST00000526553 NOX5Q96PH1 765 aa7□□□□□ -1.29
CD44-223ENST00000526553 GORASP1Q9BQQ3 440 aa7□□□□□ -1.29
CD44-223ENST00000526553 TRIM39Q9HCM9 518 aa7□□□□□ -1.29
CD44-223ENST00000526553 RASGRP1O95267 797 aa6.99□□□□□ -1.29
CD44-223ENST00000526553 LRG1P02750 347 aa6.99□□□□□ -1.29
CD44-223ENST00000526553 DLX2Q07687 328 aaPredicted RBP6.99□□□□□ -1.29
CD44-223ENST00000526553 TUSC3Q13454 348 aa6.99□□□□□ -1.29
CD44-223ENST00000526553 GPR19Q15760 415 aa6.99□□□□□ -1.29
CD44-223ENST00000526553 TEPPQ6URK8 271 aa6.99□□□□□ -1.29
CD44-223ENST00000526553 KCTD1Q719H9 257 aa6.99□□□□□ -1.29
CD44-223ENST00000526553 C11orf84Q9BUA3 381 aaPredicted RBP6.99□□□□□ -1.29
CD44-223ENST00000526553 TCRBV5S4A2TA0A5A2 114 aa6.98□□□□□ -1.29
CD44-223ENST00000526553 TCRBV16S1A1N1A0A5B0 115 aa6.98□□□□□ -1.29
CD44-223ENST00000526553 ESYT3A0FGR9 886 aa6.98□□□□□ -1.29
CD44-223ENST00000526553 CCDC66A2RUB6 948 aa6.98□□□□□ -1.29
CD44-223ENST00000526553 SH3D21A4FU49 640 aa6.98□□□□□ -1.29
CD44-223ENST00000526553 FFAR3O14843 346 aa6.98□□□□□ -1.29
CD44-223ENST00000526553 RAPGEF3O95398 923 aa6.98□□□□□ -1.29
CD44-223ENST00000526553 CKMP06732 381 aa6.98□□□□□ -1.29
CD44-223ENST00000526553 SRGAP2CP0DJJ0 459 aa6.98□□□□□ -1.29
CD44-223ENST00000526553 PYGMP11217 842 aa6.98□□□□□ -1.29
CD44-223ENST00000526553 ITGA1P56199 1179 aa6.98□□□□□ -1.29
CD44-223ENST00000526553 ST5P78524 1137 aa6.98□□□□□ -1.29
CD44-223ENST00000526553 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.98□□□□□ -1.29
CD44-223ENST00000526553 NOP9Q86U38 636 aaKnown RBP6.98□□□□□ -1.29
CD44-223ENST00000526553 HOMER1Q86YM7 354 aa6.98□□□□□ -1.29
CD44-223ENST00000526553 KYQ8NBH2 561 aa6.98□□□□□ -1.29
CD44-223ENST00000526553 SH3RF2Q8TEC5 729 aa6.98□□□□□ -1.29
CD44-223ENST00000526553 CLEC4DQ8WXI8 215 aa6.98□□□□□ -1.29
CD44-223ENST00000526553 ZBTB8AQ96BR9 441 aa6.98□□□□□ -1.29
CD44-223ENST00000526553 CELF4Q9BZC1 486 aaKnown RBP6.98□□□□□ -1.29
CD44-223ENST00000526553 CATSPERZQ9NTU4 200 aa6.98□□□□□ -1.29
CD44-223ENST00000526553 CBLCQ9ULV8 474 aa6.98□□□□□ -1.29
CD44-223ENST00000526553 SRPK3Q9UPE1 567 aa6.98□□□□□ -1.29
CD44-223ENST00000526553 TELO2Q9Y4R8 837 aa6.98□□□□□ -1.29
CD44-223ENST00000526553 ZNF561-AS1K7EIQ3 104 aa6.97□□□□□ -1.29
CD44-223ENST00000526553 NPTXRO95502 500 aa6.97□□□□□ -1.29
CD44-223ENST00000526553 PDE6AP16499 860 aa6.97□□□□□ -1.29
CD44-223ENST00000526553 CRY1Q16526 586 aa6.97□□□□□ -1.29
CD44-223ENST00000526553 FIGNQ5HY92 759 aa6.97□□□□□ -1.29
CD44-223ENST00000526553 ARHGAP36Q6ZRI8 547 aa6.97□□□□□ -1.29
CD44-223ENST00000526553 FGD2Q7Z6J4 655 aa6.97□□□□□ -1.29
CD44-223ENST00000526553 JAZF1Q86VZ6 243 aa6.97□□□□□ -1.29
CD44-223ENST00000526553 NLGN4XQ8N0W4 816 aa6.97□□□□□ -1.29
CD44-223ENST00000526553 TTLL6Q8N841 843 aa6.97□□□□□ -1.29
CD44-223ENST00000526553 TP53I13Q8NBR0 393 aaPredicted RBP6.97□□□□□ -1.29
CD44-223ENST00000526553 CLUHP3Q96NS8 147 aa6.97□□□□□ -1.29
CD44-223ENST00000526553 RFPL3O75679 317 aa6.96□□□□□ -1.3
CD44-223ENST00000526553 ASMTLO95671 621 aa6.96□□□□□ -1.3
CD44-223ENST00000526553 LTFP02788 710 aa6.96□□□□□ -1.3
CD44-223ENST00000526553 AMY2AP04746 511 aa6.96□□□□□ -1.3
CD44-223ENST00000526553 FAHP16930 419 aa6.96□□□□□ -1.3
CD44-223ENST00000526553 AMY2BP19961 511 aa6.96□□□□□ -1.3
CD44-223ENST00000526553 THBS2P35442 1172 aa6.96□□□□□ -1.3
CD44-223ENST00000526553 LACTBP83111 547 aaPredicted RBP6.96□□□□□ -1.3
CD44-223ENST00000526553 TCEA2Q15560 299 aa6.96□□□□□ -1.3
CD44-223ENST00000526553 PAN2Q504Q3 1202 aaKnown RBP6.96□□□□□ -1.3
CD44-223ENST00000526553 LIPIQ6XZB0 460 aa6.96□□□□□ -1.3
CD44-223ENST00000526553 RBM12BQ8IXT5 1001 aaKnown RBP6.96□□□□□ -1.3
CD44-223ENST00000526553 APPBP2Q92624 585 aa6.96□□□□□ -1.3
CD44-223ENST00000526553 TMEM209Q96SK2 561 aa6.96□□□□□ -1.3
CD44-223ENST00000526553 CD244Q9BZW8 370 aa6.96□□□□□ -1.3
CD44-223ENST00000526553 SPATA6Q9NWH7 488 aaPredicted RBP6.96□□□□□ -1.3
CD44-223ENST00000526553 ARID1BQ8NFD5 2236 aaPredicted RBP6.95□□□□□ -1.3
CD44-223ENST00000526553 B4E1Z4 1266 aa6.95□□□□□ -1.3
CD44-223ENST00000526553 MAN2B1O00754 1011 aa6.95□□□□□ -1.3
CD44-223ENST00000526553 PPP1R12AO14974 1030 aaPredicted RBP6.95□□□□□ -1.3
CD44-223ENST00000526553 SMARCA5O60264 1052 aaPredicted RBP6.95□□□□□ -1.3
CD44-223ENST00000526553 DNM2P50570 870 aa6.95□□□□□ -1.3
CD44-223ENST00000526553 GRIN1Q05586 938 aa6.95□□□□□ -1.3
CD44-223ENST00000526553 ADAM9Q13443 819 aa6.95□□□□□ -1.3
CD44-223ENST00000526553 OSTM1Q86WC4 334 aa6.95□□□□□ -1.3
CD44-223ENST00000526553 SP8Q8IXZ3 490 aa6.95□□□□□ -1.3
CD44-223ENST00000526553 ZNF526Q8TF50 670 aaPredicted RBP6.95□□□□□ -1.3
CD44-223ENST00000526553 WRNIP1Q96S55 665 aa6.95□□□□□ -1.3
CD44-223ENST00000526553 SYT3Q9BQG1 590 aa6.95□□□□□ -1.3
CD44-223ENST00000526553 SMURF1Q9HCE7 757 aa6.95□□□□□ -1.3
CD44-223ENST00000526553 LUC7LQ9NQ29 371 aaKnown RBP6.95□□□□□ -1.3
CD44-223ENST00000526553 NTMQ9P121 344 aa6.95□□□□□ -1.3
CD44-223ENST00000526553 MRPL42Q9Y6G3 142 aaKnown RBP6.95□□□□□ -1.3
CD44-223ENST00000526553 ADAMTS20P59510 1910 aa6.94□□□□□ -1.3
CD44-223ENST00000526553 TRIM13O60858 407 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms