RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 AEBP2Q6ZN18 517 aaPredicted RBP26.43■■□□□ 1.82
CD44-223ENST00000526553 CHIC1Q5VXU3 224 aa25.83■■□□□ 1.73
CD44-223ENST00000526553 PHF23Q9BUL5 403 aaPredicted RBP22.68■■□□□ 1.22
CD44-223ENST00000526553 SENP3Q9H4L4 574 aaPredicted RBP22.49■■□□□ 1.19
CD44-223ENST00000526553 PLPPR3Q6T4P5 718 aa20.97■□□□□ 0.95
CD44-223ENST00000526553 FOXD1Q16676 465 aa20.83■□□□□ 0.93
CD44-223ENST00000526553 PPP6R1Q9UPN7 881 aa19.99■□□□□ 0.79
CD44-223ENST00000526553 ADRA2BP18089 450 aa19.97■□□□□ 0.79
CD44-223ENST00000526553 PIAS4Q8N2W9 510 aaPredicted RBP19.64■□□□□ 0.73
CD44-223ENST00000526553 MSH5O43196 834 aa19.26■□□□□ 0.67
CD44-223ENST00000526553 PPP4R3CPQ6ZMV5 832 aa18.45■□□□□ 0.54
CD44-223ENST00000526553 SCAF1Q9H7N4 1312 aaKnown RBP18.33■□□□□ 0.53
CD44-223ENST00000526553 MAPK8IP2Q13387 824 aaPredicted RBP18.11■□□□□ 0.49
CD44-223ENST00000526553 NCBP3Q53F19 620 aaKnown RBP17.99■□□□□ 0.47
CD44-223ENST00000526553 KCNA4P22459 653 aa17.98■□□□□ 0.47
CD44-223ENST00000526553 CNKSR2Q8WXI2 1034 aa17.96■□□□□ 0.47
CD44-223ENST00000526553 DMRT2Q9Y5R5 561 aa17.94■□□□□ 0.46
CD44-223ENST00000526553 NPM3O75607 178 aaKnown RBP17.7■□□□□ 0.42
CD44-223ENST00000526553 RNF216Q9NWF9 866 aaPredicted RBP17.62■□□□□ 0.41
CD44-223ENST00000526553 HOXD11P31277 338 aaPredicted RBP17.57■□□□□ 0.4
CD44-223ENST00000526553 POTEDQ86YR6 584 aa17.55■□□□□ 0.4
CD44-223ENST00000526553 DNAJC5BQ9UF47 199 aa17.28■□□□□ 0.36
CD44-223ENST00000526553 SLC4A1APQ9BWU0 796 aaKnown RBP17.13■□□□□ 0.33
CD44-223ENST00000526553 DCAF8L1A6NGE4 600 aa17.09■□□□□ 0.33
CD44-223ENST00000526553 SLC4A2P04920 1241 aa16.71■□□□□ 0.27
CD44-223ENST00000526553 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.7■□□□□ 0.26
CD44-223ENST00000526553 FOXD4L1Q9NU39 408 aa16.59■□□□□ 0.25
CD44-223ENST00000526553 EHMT2Q96KQ7 1210 aa16.56■□□□□ 0.24
CD44-223ENST00000526553 ZBTB22O15209 634 aa16.54■□□□□ 0.24
CD44-223ENST00000526553 RNF39Q9H2S5 420 aa16.49■□□□□ 0.23
CD44-223ENST00000526553 U3KPZ7 1027 aaPredicted RBP16.44■□□□□ 0.22
CD44-223ENST00000526553 CSRNP3Q8WYN3 585 aa16.43■□□□□ 0.22
CD44-223ENST00000526553 MYCNP04198 464 aaPredicted RBP16.39■□□□□ 0.21
CD44-223ENST00000526553 C1QBPQ07021 282 aaKnown RBP16.3■□□□□ 0.2
CD44-223ENST00000526553 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.27■□□□□ 0.2
CD44-223ENST00000526553 HNRNPUL2Q1KMD3 747 aaKnown RBP16.27■□□□□ 0.2
CD44-223ENST00000526553 SAMD1Q6SPF0 538 aaPredicted RBP16.2■□□□□ 0.18
CD44-223ENST00000526553 APLP2Q06481 763 aa16.12■□□□□ 0.17
CD44-223ENST00000526553 ATXN8OSP0DMR3 200 aa16.05■□□□□ 0.16
CD44-223ENST00000526553 CACNB1Q02641 598 aaPredicted RBP16.04■□□□□ 0.16
CD44-223ENST00000526553 SPINK5Q9NQ38 1064 aaPredicted RBP15.96■□□□□ 0.15
CD44-223ENST00000526553 CAPN15O75808 1086 aa15.9■□□□□ 0.14
CD44-223ENST00000526553 ATF5Q9Y2D1 282 aaPredicted RBP15.89■□□□□ 0.13
CD44-223ENST00000526553 ZNF219Q9P2Y4 722 aaPredicted RBP15.88■□□□□ 0.13
CD44-223ENST00000526553 TRHP20396 242 aaPredicted RBP15.81■□□□□ 0.12
CD44-223ENST00000526553 DSG3P32926 999 aa15.67■□□□□ 0.1
CD44-223ENST00000526553 ABCB7O75027 752 aa15.58■□□□□ 0.08
CD44-223ENST00000526553 POLA2Q14181 598 aa15.55■□□□□ 0.08
CD44-223ENST00000526553 ZBTB12Q9Y330 459 aaPredicted RBP15.37■□□□□ 0.05
CD44-223ENST00000526553 FBLN2P98095 1184 aa15.27■□□□□ 0.04
CD44-223ENST00000526553 MKRN4PQ13434 485 aaPredicted RBP15.22■□□□□ 0.03
CD44-223ENST00000526553 OSCARQ8IYS5 282 aa15.05■□□□□ -0
CD44-223ENST00000526553 RBM42Q9BTD8 480 aaKnown RBP14.97□□□□□ -0.01
CD44-223ENST00000526553 SPDYE2BA6NHP3 402 aa14.94□□□□□ -0.02
CD44-223ENST00000526553 SPDYE6P0CI01 402 aa14.94□□□□□ -0.02
CD44-223ENST00000526553 SPDYE2Q495Y8 402 aa14.94□□□□□ -0.02
CD44-223ENST00000526553 SPDYE4A6NLX3 237 aa14.87□□□□□ -0.03
CD44-223ENST00000526553 FKBP8Q14318 412 aa14.84□□□□□ -0.03
CD44-223ENST00000526553 ZNF692Q9BU19 519 aaPredicted RBP14.83□□□□□ -0.04
CD44-223ENST00000526553 SSUH2Q9Y2M2 353 aa14.82□□□□□ -0.04
CD44-223ENST00000526553 AKT1S1Q96B36 256 aa14.77□□□□□ -0.05
CD44-223ENST00000526553 PROM2Q8N271 834 aa14.67□□□□□ -0.06
CD44-223ENST00000526553 PABPN1Q86U42 306 aaKnown RBP eCLIP14.64□□□□□ -0.07
CD44-223ENST00000526553 REM2Q8IYK8 340 aaPredicted RBP14.6□□□□□ -0.07
CD44-223ENST00000526553 SPDYE1Q8NFV5 336 aaPredicted RBP14.5□□□□□ -0.09
CD44-223ENST00000526553 PITPNM1O00562 1244 aa14.43□□□□□ -0.1
CD44-223ENST00000526553 STAG3Q9UJ98 1225 aa14.43□□□□□ -0.1
CD44-223ENST00000526553 CLEC11AQ9Y240 323 aa14.38□□□□□ -0.11
CD44-223ENST00000526553 FBXO3Q9UK99 471 aa14.37□□□□□ -0.11
CD44-223ENST00000526553 CHRDL2Q6WN34 429 aa14.32□□□□□ -0.12
CD44-223ENST00000526553 PRR29P0C7W0 189 aa14.27□□□□□ -0.13
CD44-223ENST00000526553 FXR2P51116 673 aaKnown RBP eCLIP14.19□□□□□ -0.14
CD44-223ENST00000526553 VASPP50552 380 aaPredicted RBP14.16□□□□□ -0.14
CD44-223ENST00000526553 PIP4P2Q8N4L2 257 aa14.13□□□□□ -0.15
CD44-223ENST00000526553 CREBZFQ9NS37 354 aa14.09□□□□□ -0.15
CD44-223ENST00000526553 MIER1Q8N108 512 aa14.07□□□□□ -0.16
CD44-223ENST00000526553 PLCD3Q8N3E9 789 aa14.07□□□□□ -0.16
CD44-223ENST00000526553 PLEKHG5O94827 1062 aa14.06□□□□□ -0.16
CD44-223ENST00000526553 PRKAR2AP13861 404 aaKnown RBP14.06□□□□□ -0.16
CD44-223ENST00000526553 CHADLQ6NUI6 762 aa14.02□□□□□ -0.17
CD44-223ENST00000526553 ZBTB47Q9UFB7 747 aaPredicted RBP13.97□□□□□ -0.17
CD44-223ENST00000526553 MNX1P50219 401 aaPredicted RBP13.95□□□□□ -0.18
CD44-223ENST00000526553 IFNLR1Q8IU57 520 aaPredicted RBP13.94□□□□□ -0.18
CD44-223ENST00000526553 FARP1Q9Y4F1 1045 aaPredicted RBP13.93□□□□□ -0.18
CD44-223ENST00000526553 POTEHQ6S545 545 aa13.89□□□□□ -0.19
CD44-223ENST00000526553 NPM1P06748 294 aaKnown RBP eCLIP13.88□□□□□ -0.19
CD44-223ENST00000526553 KLHL34Q8N239 644 aa13.88□□□□□ -0.19
CD44-223ENST00000526553 SPOCK2Q92563 424 aa13.8□□□□□ -0.2
CD44-223ENST00000526553 NUBP1P53384 320 aa13.76□□□□□ -0.21
CD44-223ENST00000526553 C19orf67A6NJJ6 358 aa13.7□□□□□ -0.22
CD44-223ENST00000526553 RASEFQ8IZ41 740 aa13.69□□□□□ -0.22
CD44-223ENST00000526553 CD44P16070 742 aaKnown RBP13.66□□□□□ -0.22
CD44-223ENST00000526553 FAM212AQ96EL1 285 aa13.66□□□□□ -0.22
CD44-223ENST00000526553 HAX1O00165 279 aa13.65□□□□□ -0.22
CD44-223ENST00000526553 PAK3O75914 559 aaPredicted RBP13.65□□□□□ -0.22
CD44-223ENST00000526553 GSE1Q14687 1217 aa13.61□□□□□ -0.23
CD44-223ENST00000526553 TSPYL2Q9H2G4 693 aaPredicted RBP13.6□□□□□ -0.23
CD44-223ENST00000526553 DCAF8Q5TAQ9 597 aa13.58□□□□□ -0.24
CD44-223ENST00000526553 ZRANB1Q9UGI0 708 aa13.57□□□□□ -0.24
CD44-223ENST00000526553 CIZ1Q9ULV3 898 aaPredicted RBP13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms