RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 FBXO16Q8IX29 292 aaPredicted RBP11.42□□□□□ -0.58
NUP54-203ENST00000504173 FOXP1Q9H334 677 aaPredicted RBP11.42□□□□□ -0.58
NUP54-203ENST00000504173 ABHD16BQ9H3Z7 469 aa11.42□□□□□ -0.58
NUP54-203ENST00000504173 VTA1Q9NP79 307 aa11.42□□□□□ -0.58
NUP54-203ENST00000504173 PRDM5Q9NQX1 630 aaPredicted RBP11.42□□□□□ -0.58
NUP54-203ENST00000504173 LRRC37A2A6NM11 1700 aa11.41□□□□□ -0.58
NUP54-203ENST00000504173 MSCO60682 206 aa11.41□□□□□ -0.58
NUP54-203ENST00000504173 EIF3JO75822 258 aaKnown RBP11.41□□□□□ -0.58
NUP54-203ENST00000504173 STAM2O75886 525 aa11.41□□□□□ -0.58
NUP54-203ENST00000504173 CYBAP13498 195 aa11.41□□□□□ -0.58
NUP54-203ENST00000504173 SYT1P21579 422 aa11.41□□□□□ -0.58
NUP54-203ENST00000504173 ZNF76P36508 570 aa11.41□□□□□ -0.58
NUP54-203ENST00000504173 ACVR2BQ13705 512 aa11.41□□□□□ -0.58
NUP54-203ENST00000504173 XRRA1Q6P2D8 792 aa11.41□□□□□ -0.58
NUP54-203ENST00000504173 SEPT14Q6ZU15 432 aa11.41□□□□□ -0.58
NUP54-203ENST00000504173 SH3RF1Q7Z6J0 888 aa11.41□□□□□ -0.58
NUP54-203ENST00000504173 VSIG10LQ86VR7 867 aa11.41□□□□□ -0.58
NUP54-203ENST00000504173 TBCKQ8TEA7 893 aa11.41□□□□□ -0.58
NUP54-203ENST00000504173 TNFRSF25Q93038 417 aa11.41□□□□□ -0.58
NUP54-203ENST00000504173 ZFP91Q96JP5 570 aaPredicted RBP11.41□□□□□ -0.58
NUP54-203ENST00000504173 NRBP1Q9UHY1 535 aa11.41□□□□□ -0.58
NUP54-203ENST00000504173 TRANK1O15050 2925 aa11.41□□□□□ -0.58
NUP54-203ENST00000504173 FAM205CA6NFA0 338 aa11.4□□□□□ -0.58
NUP54-203ENST00000504173 KIF28PB7ZC32 967 aa11.4□□□□□ -0.58
NUP54-203ENST00000504173 STX6O43752 255 aa11.4□□□□□ -0.58
NUP54-203ENST00000504173 TLL1O43897 1013 aa11.4□□□□□ -0.58
NUP54-203ENST00000504173 CNGA1P29973 690 aa11.4□□□□□ -0.58
NUP54-203ENST00000504173 MRPS9P82933 396 aaKnown RBP11.4□□□□□ -0.58
NUP54-203ENST00000504173 INF2Q27J81 1249 aa11.4□□□□□ -0.58
NUP54-203ENST00000504173 GNPTABQ3T906 1256 aa11.4□□□□□ -0.58
NUP54-203ENST00000504173 FBXL18Q96ME1 805 aa11.4□□□□□ -0.58
NUP54-203ENST00000504173 PBX4Q9BYU1 374 aa11.4□□□□□ -0.58
NUP54-203ENST00000504173 KATNBL1Q9H079 304 aa11.4□□□□□ -0.58
NUP54-203ENST00000504173 RTEL1Q9NZ71 1219 aa11.4□□□□□ -0.58
NUP54-203ENST00000504173 MYO9BQ13459 2157 aa11.4□□□□□ -0.59
NUP54-203ENST00000504173 MYH7BA7E2Y1 1941 aa11.39□□□□□ -0.59
NUP54-203ENST00000504173 CYP3A4P08684 503 aa11.39□□□□□ -0.59
NUP54-203ENST00000504173 ZNF865P0CJ78 1059 aaPredicted RBP11.39□□□□□ -0.59
NUP54-203ENST00000504173 AKR1A1P14550 325 aa11.39□□□□□ -0.59
NUP54-203ENST00000504173 IGFBP4P22692 258 aa11.39□□□□□ -0.59
NUP54-203ENST00000504173 ITGB8P26012 769 aa11.39□□□□□ -0.59
NUP54-203ENST00000504173 U2AF2P26368 475 aaKnown RBP eCLIP11.39□□□□□ -0.595e-7■□□□□ 8.9
NUP54-203ENST00000504173 ADCYAP1R1P41586 468 aa11.39□□□□□ -0.59
NUP54-203ENST00000504173 USP11P51784 963 aa11.39□□□□□ -0.59
NUP54-203ENST00000504173 LETM2Q2VYF4 491 aa11.39□□□□□ -0.59
NUP54-203ENST00000504173 CCDC144BQ3MJ40 725 aa11.39□□□□□ -0.59
NUP54-203ENST00000504173 TRIM60Q495X7 471 aa11.39□□□□□ -0.59
NUP54-203ENST00000504173 CEP55Q53EZ4 464 aa11.39□□□□□ -0.59
NUP54-203ENST00000504173 EARS2Q5JPH6 523 aaKnown RBP11.39□□□□□ -0.59
NUP54-203ENST00000504173 USP34Q70CQ2 3546 aa11.39□□□□□ -0.59
NUP54-203ENST00000504173 NEK8Q86SG6 692 aa11.39□□□□□ -0.59
NUP54-203ENST00000504173 NLRX1Q86UT6 975 aa11.39□□□□□ -0.59
NUP54-203ENST00000504173 NOSTRINQ8IVI9 506 aa11.39□□□□□ -0.59
NUP54-203ENST00000504173 TRPV1Q8NER1 839 aa11.39□□□□□ -0.59
NUP54-203ENST00000504173 SCFD2Q8WU76 684 aa11.39□□□□□ -0.59
NUP54-203ENST00000504173 CRYGNQ8WXF5 182 aa11.39□□□□□ -0.59
NUP54-203ENST00000504173 HERVK_113Q902F9 699 aa11.39□□□□□ -0.59
NUP54-203ENST00000504173 MXRA8Q9BRK3 442 aa11.39□□□□□ -0.59
NUP54-203ENST00000504173 PDGFCQ9NRA1 345 aa11.39□□□□□ -0.59
NUP54-203ENST00000504173 DDX20Q9UHI6 824 aaKnown RBP11.39□□□□□ -0.59
NUP54-203ENST00000504173 FAM184BQ9ULE4 1060 aa11.39□□□□□ -0.59
NUP54-203ENST00000504173 MTMR6Q9Y217 621 aa11.39□□□□□ -0.59
NUP54-203ENST00000504173 UBIAD1Q9Y5Z9 338 aa11.39□□□□□ -0.59
NUP54-203ENST00000504173 MRVI1Q9Y6F6 885 aa11.39□□□□□ -0.59
NUP54-203ENST00000504173 SPTBN4Q9H254 2564 aa11.39□□□□□ -0.59
NUP54-203ENST00000504173 SEPT4O43236 478 aa11.38□□□□□ -0.59
NUP54-203ENST00000504173 FIBPO43427 364 aa11.38□□□□□ -0.59
NUP54-203ENST00000504173 RGS20O76081 388 aa11.38□□□□□ -0.59
NUP54-203ENST00000504173 PDIA4P13667 645 aaKnown RBP11.38□□□□□ -0.59
NUP54-203ENST00000504173 ITGB5P18084 799 aa11.38□□□□□ -0.59
NUP54-203ENST00000504173 CIITAP33076 1130 aa11.38□□□□□ -0.59
NUP54-203ENST00000504173 SETQ01105 290 aaPredicted RBP11.38□□□□□ -0.59
NUP54-203ENST00000504173 TTLL4Q14679 1199 aa11.38□□□□□ -0.59
NUP54-203ENST00000504173 TAPT1Q6NXT6 567 aa11.38□□□□□ -0.59
NUP54-203ENST00000504173 KCNV1Q6PIU1 500 aa11.38□□□□□ -0.59
NUP54-203ENST00000504173 FERMT3Q86UX7 667 aa11.38□□□□□ -0.59
NUP54-203ENST00000504173 PLA2G4DQ86XP0 818 aa11.38□□□□□ -0.59
NUP54-203ENST00000504173 GPRASP2Q96D09 838 aa11.38□□□□□ -0.59
NUP54-203ENST00000504173 INPP4AQ96PE3 977 aaPredicted RBP11.38□□□□□ -0.59
NUP54-203ENST00000504173 NAP1L4Q99733 375 aaKnown RBP11.38□□□□□ -0.59
NUP54-203ENST00000504173 WDR11Q9BZH6 1224 aa11.38□□□□□ -0.59
NUP54-203ENST00000504173 JADE2Q9NQC1 790 aa11.38□□□□□ -0.59
NUP54-203ENST00000504173 NOL7Q9UMY1 257 aaKnown RBP11.38□□□□□ -0.59
NUP54-203ENST00000504173 KIAA1217Q5T5P2 1943 aa11.37□□□□□ -0.59
NUP54-203ENST00000504173 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.37□□□□□ -0.59
NUP54-203ENST00000504173 RBM47A0AV96 593 aaKnown RBP11.37□□□□□ -0.59
NUP54-203ENST00000504173 FAM86B1E9PN63 330 aa11.37□□□□□ -0.59
NUP54-203ENST00000504173 KIAA0355O15063 1070 aa11.37□□□□□ -0.59
NUP54-203ENST00000504173 EDIL3O43854 480 aa11.37□□□□□ -0.59
NUP54-203ENST00000504173 CCNT1O60563 726 aaKnown RBP11.37□□□□□ -0.59
NUP54-203ENST00000504173 TDP2O95551 362 aa11.37□□□□□ -0.59
NUP54-203ENST00000504173 FAM86B2P0C5J1 330 aa11.37□□□□□ -0.59
NUP54-203ENST00000504173 TXNP10599 105 aaKnown RBP11.37□□□□□ -0.59
NUP54-203ENST00000504173 GCFC2P16383 781 aaKnown RBP11.37□□□□□ -0.59
NUP54-203ENST00000504173 ATP2B1P20020 1258 aa11.37□□□□□ -0.59
NUP54-203ENST00000504173 ICAM3P32942 547 aa11.37□□□□□ -0.59
NUP54-203ENST00000504173 PBX2P40425 430 aa11.37□□□□□ -0.59
NUP54-203ENST00000504173 TNFAIP2Q03169 654 aa11.37□□□□□ -0.59
NUP54-203ENST00000504173 FPGSQ05932 587 aa11.37□□□□□ -0.59
NUP54-203ENST00000504173 MTMR1Q13613 665 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms