RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 FGFR1OPO95684 399 aaKnown RBP17.81■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 ACTN2P35609 894 aa17.81■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 ATP2B2Q01814 1243 aa17.81■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 ZNF543Q08ER8 600 aa17.81■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 KCNMA1Q12791 1236 aa17.81■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 GPR162Q16538 588 aa17.81■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 ASTE1Q2TB18 679 aaPredicted RBP17.81■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 ZCWPW2Q504Y3 356 aa17.81■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 FOXR2Q6PJQ5 311 aa17.81■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 RRAGAQ7L523 313 aa17.81■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 ZNF572Q7Z3I7 529 aaPredicted RBP17.81■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 CCDC84Q86UT8 332 aaPredicted RBP17.81■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 ADGRF4Q8IZF3 695 aa17.81■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 RAB34Q9BZG1 259 aa17.81■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 DDX4Q9NQI0 724 aaKnown RBP17.81■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 PNMA6FA0A0J9YX94 578 aa17.8■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 PHACTR2O75167 634 aa17.8■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 TACC1O75410 805 aa17.8■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 PRLRP16471 622 aa17.8■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 TNNI2P48788 182 aa17.8■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 PICALMQ13492 652 aa17.8■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 MAP9Q49MG5 647 aa17.8■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 HSP90B2PQ58FF3 399 aa17.8■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 TTBK2Q6IQ55 1244 aa17.8■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 PPP1R18Q6NYC8 613 aa17.8■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 MMGT1Q8N4V1 131 aa17.8■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 CCDC155Q8N6L0 562 aa17.8■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 COG1Q8WTW3 980 aa17.8■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 GJA10Q969M2 543 aa17.8■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 ACBD3Q9H3P7 528 aa17.8■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 SALL4Q9UJQ4 1053 aa17.8■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 PCNTO95613 3336 aa17.8■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 ERCC3P19447 782 aa17.8■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 HOXA7P31268 230 aaPredicted RBP17.8■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 GTF2IP78347 998 aa17.8■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 PDXDC1Q6P996 788 aa17.8■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 GPIHBP1Q8IV16 184 aa17.8■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 GSPT2Q8IYD1 628 aaKnown RBP17.8■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 LARGE2Q8N3Y3 721 aa17.8■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 YDJCA8MPS7 323 aa17.79■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 PJA2O43164 708 aa17.79■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 RAD17O75943 681 aa17.79■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 PRPF6O94906 941 aaKnown RBP17.79■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 TNNT3P45378 269 aaPredicted RBP17.79■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 COASYQ13057 564 aa17.79■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 HGSNATQ68CP4 663 aa17.79■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 LRRC27Q9C0I9 530 aa17.79■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 TAOK3Q9H2K8 898 aa17.79■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 ECE2O60344 883 aa17.79■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 RAD51AP2Q09MP3 1159 aa17.79■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 TMC4Q7Z404 712 aa17.79■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 FGFBP2Q9BYJ0 223 aa17.79■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 EDEM3Q9BZQ6 932 aa17.79■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 DDX25Q9UHL0 483 aaKnown RBP17.79■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 GREB1LQ9C091 1923 aaPredicted RBP17.79■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 AKR1B10O60218 316 aa17.78■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 TTLL1O95922 423 aa17.78■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 ITIH3Q06033 890 aa17.78■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 MAPK8IP2Q13387 824 aaPredicted RBP17.78■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 HYIQ5T013 277 aa17.78■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 MYOCDQ8IZQ8 938 aa17.78■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 DRC1Q96MC2 740 aa17.78■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 GDAP1L1Q96MZ0 367 aa17.78■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 TSG101Q99816 390 aa17.78■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 DEF6Q9H4E7 631 aa17.78■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 MYH4Q9Y623 1939 aa17.78■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 RNF40O75150 1001 aa17.78■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 RPS6KA5O75582 802 aa17.78■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 NOL4O94818 638 aa17.78■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 MAGEA1P43355 309 aa17.78■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 PSEN1P49768 467 aa17.78■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 HDAC7Q8WUI4 952 aa17.78■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 OSBPL9Q96SU4 736 aa17.78■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 SELENOOQ9BVL4 669 aa17.78■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 FAM204AQ9H8W3 233 aa17.78■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 AGPSO00116 658 aa17.77■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 SHMT1P34896 483 aa17.77■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 SLC16A2P36021 539 aa17.77■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 GFPT1Q06210 699 aaPredicted RBP17.77■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 IQCEQ6IPM2 695 aa17.77■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 NFRKBQ6P4R8 1299 aa17.77■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 RTKN2Q8IZC4 609 aa17.77■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 AENQ8WTP8 325 aaKnown RBP17.77■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 MTMR8Q96EF0 704 aa17.77■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 PANK4Q9NVE7 773 aa17.77■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 ZBTB12Q9Y330 459 aaPredicted RBP17.77■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 PCDHA2Q9Y5H9 948 aa17.77■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 COL4A3BPQ9Y5P4 624 aa17.77■□□□□ 0.44
MSH5-SAPCD1-208ENST00000498473 SSU72P8A0A1W2PR75 194 aa17.76■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 USP17L10C9JJH3 530 aa17.76■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 TLR2O60603 784 aa17.76■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 FKBP3Q00688 224 aaKnown RBP17.76■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 SEPT2Q15019 361 aa17.76■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 CERS5Q8N5B7 392 aa17.76■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 SPATA4Q8NEY3 305 aa17.76■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 CUL5Q93034 780 aa17.76■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 TRERF1Q96PN7 1200 aa17.76■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 LRRC1Q9BTT6 524 aa17.76■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 DMGDHQ9UI17 866 aaKnown RBP17.76■□□□□ 0.43
MSH5-SAPCD1-208ENST00000498473 ATAD5Q96QE3 1844 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms