RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-208	ENST00000494728	LCHN	A4D1U4	455 aa		13.43	□□□□□ -0.26
VTI1A-208	ENST00000494728	CCDC69	A6NI79	296 aa		13.43	□□□□□ -0.26
VTI1A-208	ENST00000494728	SPATA31C2	B4DYI2	1134 aa		13.43	□□□□□ -0.26
VTI1A-208	ENST00000494728	RFXAP	O00287	272 aa		13.43	□□□□□ -0.26
VTI1A-208	ENST00000494728	PIK3CD	O00329	1044 aa		13.43	□□□□□ -0.26
VTI1A-208	ENST00000494728	PPFIA4	O75335	1185 aa		13.43	□□□□□ -0.26
VTI1A-208	ENST00000494728	CXCL10	P02778	98 aa		13.43	□□□□□ -0.26
VTI1A-208	ENST00000494728	KIF5B	P33176	963 aa		13.43	□□□□□ -0.26
VTI1A-208	ENST00000494728	WDR5	P61964	334 aa	Known RBP	13.43	□□□□□ -0.26
VTI1A-208	ENST00000494728	ZNF618	Q5T7W0	954 aa		13.43	□□□□□ -0.26
VTI1A-208	ENST00000494728	TYW1B	Q6NUM6	668 aa		13.43	□□□□□ -0.26
VTI1A-208	ENST00000494728	CYFIP1	Q7L576	1253 aa		13.43	□□□□□ -0.26
VTI1A-208	ENST00000494728	SGMS1	Q86VZ5	419 aa		13.43	□□□□□ -0.26
VTI1A-208	ENST00000494728	RETREG2	Q8NC44	543 aa		13.43	□□□□□ -0.26
VTI1A-208	ENST00000494728	PPM1E	Q8WY54	764 aa		13.43	□□□□□ -0.26
VTI1A-208	ENST00000494728	KATNAL1	Q9BW62	490 aa		13.43	□□□□□ -0.26
VTI1A-208	ENST00000494728	CERS4	Q9HA82	394 aa		13.43	□□□□□ -0.26
VTI1A-208	ENST00000494728	BRPF3	Q9ULD4	1205 aa		13.43	□□□□□ -0.26
VTI1A-208	ENST00000494728	TGFB3	P10600	412 aa		13.42	□□□□□ -0.26
VTI1A-208	ENST00000494728	SMARCA1	P28370	1054 aa		13.42	□□□□□ -0.26
VTI1A-208	ENST00000494728	FUT2	Q10981	343 aa		13.42	□□□□□ -0.26
VTI1A-208	ENST00000494728	TRAF1	Q13077	416 aa		13.42	□□□□□ -0.26
VTI1A-208	ENST00000494728	PTK7	Q13308	1070 aa		13.42	□□□□□ -0.26
VTI1A-208	ENST00000494728	GNPTAB	Q3T906	1256 aa		13.42	□□□□□ -0.26
VTI1A-208	ENST00000494728	PCNX4	Q63HM2	1172 aa		13.42	□□□□□ -0.26
VTI1A-208	ENST00000494728	KCNV1	Q6PIU1	500 aa		13.42	□□□□□ -0.26
VTI1A-208	ENST00000494728	APOA5	Q6Q788	366 aa		13.42	□□□□□ -0.26
VTI1A-208	ENST00000494728	METTL7B	Q6UX53	244 aa		13.42	□□□□□ -0.26
VTI1A-208	ENST00000494728	SERINC5	Q86VE9	423 aa		13.42	□□□□□ -0.26
VTI1A-208	ENST00000494728	HERC6	Q8IVU3	1022 aa		13.42	□□□□□ -0.26
VTI1A-208	ENST00000494728	SMARCC2	Q8TAQ2	1214 aa		13.42	□□□□□ -0.26
VTI1A-208	ENST00000494728	SLC9A7	Q96T83	725 aa		13.42	□□□□□ -0.26
VTI1A-208	ENST00000494728	GAS2L1	Q99501	681 aa	Predicted RBP	13.42	□□□□□ -0.26
VTI1A-208	ENST00000494728	GPR20	Q99678	358 aa		13.42	□□□□□ -0.26
VTI1A-208	ENST00000494728	MLXIP	Q9HAP2	919 aa		13.42	□□□□□ -0.26
VTI1A-208	ENST00000494728	SEC63	Q9UGP8	760 aa	Known RBP	13.42	□□□□□ -0.26
VTI1A-208	ENST00000494728	SLC12A7	Q9Y666	1083 aa		13.42	□□□□□ -0.26
VTI1A-208	ENST00000494728		H3BRB1	525 aa		13.41	□□□□□ -0.26
VTI1A-208	ENST00000494728	TREH	O43280	583 aa		13.41	□□□□□ -0.26
VTI1A-208	ENST00000494728	FIBP	O43427	364 aa		13.41	□□□□□ -0.26
VTI1A-208	ENST00000494728	ATP9A	O75110	1047 aa		13.41	□□□□□ -0.26
VTI1A-208	ENST00000494728	SMIM10L2A	P0DMW4	78 aa		13.41	□□□□□ -0.26
VTI1A-208	ENST00000494728	SMIM10L2B	P0DMW5	78 aa		13.41	□□□□□ -0.26
VTI1A-208	ENST00000494728	ACTN1	P12814	892 aa		13.41	□□□□□ -0.26
VTI1A-208	ENST00000494728	CPA1	P15085	419 aa		13.41	□□□□□ -0.26
VTI1A-208	ENST00000494728	EXOSC10	Q01780	885 aa	Known RBP	13.41	□□□□□ -0.26
VTI1A-208	ENST00000494728	SP4	Q02446	784 aa		13.41	□□□□□ -0.26
VTI1A-208	ENST00000494728	MKRN4P	Q13434	485 aa	Predicted RBP	13.41	□□□□□ -0.26
VTI1A-208	ENST00000494728	CCDC85B	Q15834	202 aa	Predicted RBP	13.41	□□□□□ -0.26
VTI1A-208	ENST00000494728	KRT40	Q6A162	431 aa		13.41	□□□□□ -0.26
VTI1A-208	ENST00000494728	WWC2	Q6AWC2	1192 aa		13.41	□□□□□ -0.26
VTI1A-208	ENST00000494728	CCDC155	Q8N6L0	562 aa		13.41	□□□□□ -0.26
VTI1A-208	ENST00000494728	FANCB	Q8NB91	859 aa		13.41	□□□□□ -0.26
VTI1A-208	ENST00000494728	LZTS2	Q9BRK4	669 aa		13.41	□□□□□ -0.26
VTI1A-208	ENST00000494728	TUT1	Q9H6E5	874 aa	Known RBP	13.41	□□□□□ -0.26
VTI1A-208	ENST00000494728	KIAA1671	Q9BY89	1806 aa		13.41	□□□□□ -0.26
VTI1A-208	ENST00000494728	CDC45	O75419	566 aa		13.4	□□□□□ -0.26
VTI1A-208	ENST00000494728	STAM2	O75886	525 aa		13.4	□□□□□ -0.26
VTI1A-208	ENST00000494728	BAIAP3	O94812	1187 aa		13.4	□□□□□ -0.26
VTI1A-208	ENST00000494728	KCNA2	P16389	499 aa		13.4	□□□□□ -0.26
VTI1A-208	ENST00000494728	ITGB5	P18084	799 aa		13.4	□□□□□ -0.26
VTI1A-208	ENST00000494728	IGFBP4	P22692	258 aa		13.4	□□□□□ -0.26
VTI1A-208	ENST00000494728	GNAQ	P50148	359 aa		13.4	□□□□□ -0.26
VTI1A-208	ENST00000494728	TAP1	Q03518	808 aa		13.4	□□□□□ -0.26
VTI1A-208	ENST00000494728	CNKSR3	Q6P9H4	555 aa		13.4	□□□□□ -0.26
VTI1A-208	ENST00000494728	HEATR3	Q7Z4Q2	680 aa		13.4	□□□□□ -0.26
VTI1A-208	ENST00000494728	PGBD1	Q96JS3	809 aa		13.4	□□□□□ -0.26
VTI1A-208	ENST00000494728	NEK1	Q96PY6	1258 aa		13.4	□□□□□ -0.26
VTI1A-208	ENST00000494728	RNPEP	Q9H4A4	650 aa		13.4	□□□□□ -0.26
VTI1A-208	ENST00000494728	FAM217B	Q9NTX9	383 aa	Predicted RBP	13.4	□□□□□ -0.26
VTI1A-208	ENST00000494728	PKD2L1	Q9P0L9	805 aa		13.4	□□□□□ -0.26
VTI1A-208	ENST00000494728	MYO7A	Q13402	2215 aa		13.4	□□□□□ -0.26
VTI1A-208	ENST00000494728	COL4A6	Q14031	1691 aa		13.4	□□□□□ -0.26
VTI1A-208	ENST00000494728	C17orf102	A2RUQ5	167 aa		13.39	□□□□□ -0.27
VTI1A-208	ENST00000494728	NOP56	O00567	594 aa	Known RBP	13.39	□□□□□ -0.27
VTI1A-208	ENST00000494728	ADAMTS3	O15072	1205 aa		13.39	□□□□□ -0.27
VTI1A-208	ENST00000494728	CALM1	P0DP23	149 aa		13.39	□□□□□ -0.27
VTI1A-208	ENST00000494728	CALM2	P0DP24	149 aa		13.39	□□□□□ -0.27
VTI1A-208	ENST00000494728	CALM3	P0DP25	149 aa		13.39	□□□□□ -0.27
VTI1A-208	ENST00000494728	CDC27	P30260	824 aa		13.39	□□□□□ -0.27
VTI1A-208	ENST00000494728	UTP14C	Q5TAP6	766 aa	Known RBP	13.39	□□□□□ -0.27
VTI1A-208	ENST00000494728	TMTC2	Q8N394	836 aa		13.39	□□□□□ -0.27
VTI1A-208	ENST00000494728	PHOSPHO2	Q8TCD6	241 aa		13.39	□□□□□ -0.27
VTI1A-208	ENST00000494728	CUL5	Q93034	780 aa		13.39	□□□□□ -0.27
VTI1A-208	ENST00000494728	ATP6V0A1	Q93050	837 aa		13.39	□□□□□ -0.27
VTI1A-208	ENST00000494728	PSTPIP2	Q9H939	334 aa		13.39	□□□□□ -0.27
VTI1A-208	ENST00000494728	SETD4	Q9NVD3	440 aa		13.39	□□□□□ -0.27
VTI1A-208	ENST00000494728	RALGAPA2	Q2PPJ7	1873 aa		13.39	□□□□□ -0.27
VTI1A-208	ENST00000494728	EVPL	Q92817	2033 aa		13.39	□□□□□ -0.27
VTI1A-208	ENST00000494728	LPXN	O60711	386 aa		13.38	□□□□□ -0.27
VTI1A-208	ENST00000494728	CTSH	P09668	335 aa		13.38	□□□□□ -0.27
VTI1A-208	ENST00000494728	THPO	P40225	353 aa		13.38	□□□□□ -0.27
VTI1A-208	ENST00000494728	KCNJ6	P48051	423 aa		13.38	□□□□□ -0.27
VTI1A-208	ENST00000494728	ADAM17	P78536	824 aa		13.38	□□□□□ -0.27
VTI1A-208	ENST00000494728	NEDD9	Q14511	834 aa		13.38	□□□□□ -0.27
VTI1A-208	ENST00000494728	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	13.38	□□□□□ -0.27
VTI1A-208	ENST00000494728	MICALL1	Q8N3F8	863 aa		13.38	□□□□□ -0.27
VTI1A-208	ENST00000494728	CYP2W1	Q8TAV3	490 aa		13.38	□□□□□ -0.27
VTI1A-208	ENST00000494728	LMBR1	Q8WVP7	490 aa		13.38	□□□□□ -0.27
VTI1A-208	ENST00000494728	ARNTL2	Q8WYA1	636 aa		13.38	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms