RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 GJB5O95377 273 aa14.63□□□□□ -0.07
SKA1-205ENST00000494518 CTSHP09668 335 aa14.63□□□□□ -0.07
SKA1-205ENST00000494518 CHMLP26374 656 aa14.63□□□□□ -0.07
SKA1-205ENST00000494518 SP4Q02446 784 aa14.63□□□□□ -0.07
SKA1-205ENST00000494518 IKBKEQ14164 716 aa14.63□□□□□ -0.07
SKA1-205ENST00000494518 AAK1Q2M2I8 961 aa14.63□□□□□ -0.07
SKA1-205ENST00000494518 KCNV1Q6PIU1 500 aa14.63□□□□□ -0.07
SKA1-205ENST00000494518 ATP6V0A1Q93050 837 aa14.63□□□□□ -0.07
SKA1-205ENST00000494518 C16orf70Q9BSU1 422 aa14.63□□□□□ -0.07
SKA1-205ENST00000494518 OSBPL7Q9BZF2 842 aa14.63□□□□□ -0.07
SKA1-205ENST00000494518 RTEL1Q9NZ71 1219 aa14.63□□□□□ -0.07
SKA1-205ENST00000494518 PNMA6FA0A0J9YX94 578 aa14.62□□□□□ -0.07
SKA1-205ENST00000494518 ABHD14A-ACY1A0A1B0GW23 586 aa14.62□□□□□ -0.07
SKA1-205ENST00000494518 C17orf102A2RUQ5 167 aa14.62□□□□□ -0.07
SKA1-205ENST00000494518 LINC01553A4QN01 128 aa14.62□□□□□ -0.07
SKA1-205ENST00000494518 NOP56O00567 594 aaKnown RBP14.62□□□□□ -0.07
SKA1-205ENST00000494518 TREHO43280 583 aa14.62□□□□□ -0.07
SKA1-205ENST00000494518 PARNO95453 639 aaKnown RBP14.62□□□□□ -0.07
SKA1-205ENST00000494518 LGALS2P05162 132 aa14.62□□□□□ -0.07
SKA1-205ENST00000494518 SMIM10L2AP0DMW4 78 aa14.62□□□□□ -0.07
SKA1-205ENST00000494518 SMIM10L2BP0DMW5 78 aa14.62□□□□□ -0.07
SKA1-205ENST00000494518 ANTXR2P58335 489 aa14.62□□□□□ -0.07
SKA1-205ENST00000494518 MRPS9P82933 396 aaKnown RBP14.62□□□□□ -0.07
SKA1-205ENST00000494518 TROAPQ12815 778 aa14.62□□□□□ -0.07
SKA1-205ENST00000494518 CYFIP1Q7L576 1253 aa14.62□□□□□ -0.07
SKA1-205ENST00000494518 TRIM50Q86XT4 487 aa14.62□□□□□ -0.07
SKA1-205ENST00000494518 MYOCDQ8IZQ8 938 aa14.62□□□□□ -0.07
SKA1-205ENST00000494518 DBF4BQ8NFT6 615 aa14.62□□□□□ -0.07
SKA1-205ENST00000494518 NCOA7Q8NI08 942 aa14.62□□□□□ -0.07
SKA1-205ENST00000494518 RUFY2Q8WXA3 655 aa14.62□□□□□ -0.07
SKA1-205ENST00000494518 HLA-CQ95604 372 aa14.62□□□□□ -0.07
SKA1-205ENST00000494518 RAD9AQ99638 391 aa14.62□□□□□ -0.07
SKA1-205ENST00000494518 SUGCTQ9HAC7 445 aa14.62□□□□□ -0.07
SKA1-205ENST00000494518 MAP3K20Q9NYL2 800 aaKnown RBP14.62□□□□□ -0.07
SKA1-205ENST00000494518 SUPT16HQ9Y5B9 1047 aaKnown RBP14.62□□□□□ -0.07
SKA1-205ENST00000494518 LOXHD1Q8IVV2 1947 aa14.62□□□□□ -0.07
SKA1-205ENST00000494518 ATG2AQ2TAZ0 1938 aa14.61□□□□□ -0.07
SKA1-205ENST00000494518 RSPH10B2B2RC85 870 aa14.61□□□□□ -0.07
SKA1-205ENST00000494518 H3BRB1 525 aa14.61□□□□□ -0.07
SKA1-205ENST00000494518 RSPH10BP0C881 870 aa14.61□□□□□ -0.07
SKA1-205ENST00000494518 SEMA3FQ13275 785 aa14.61□□□□□ -0.07
SKA1-205ENST00000494518 SART3Q15020 963 aaKnown RBP14.61□□□□□ -0.07
SKA1-205ENST00000494518 UTP14CQ5TAP6 766 aaKnown RBP14.61□□□□□ -0.07
SKA1-205ENST00000494518 USP17L6PQ6QN14 398 aa14.61□□□□□ -0.07
SKA1-205ENST00000494518 CATIPQ7Z7H3 387 aa14.61□□□□□ -0.07
SKA1-205ENST00000494518 SERINC5Q86VE9 423 aa14.61□□□□□ -0.07
SKA1-205ENST00000494518 RAB11FIP4Q86YS3 637 aa14.61□□□□□ -0.07
SKA1-205ENST00000494518 TGS1Q96RS0 853 aaKnown RBP14.61□□□□□ -0.07
SKA1-205ENST00000494518 C17orf80Q9BSJ5 609 aa14.61□□□□□ -0.07
SKA1-205ENST00000494518 TUT1Q9H6E5 874 aaKnown RBP14.61□□□□□ -0.07
SKA1-205ENST00000494518 COG5Q9UP83 839 aa14.61□□□□□ -0.07
SKA1-205ENST00000494518 TGFB3P10600 412 aa14.6□□□□□ -0.07
SKA1-205ENST00000494518 ERVK-21P61565 698 aa14.6□□□□□ -0.07
SKA1-205ENST00000494518 GNPTABQ3T906 1256 aa14.6□□□□□ -0.07
SKA1-205ENST00000494518 MB21D2Q8IYB1 491 aaPredicted RBP14.6□□□□□ -0.07
SKA1-205ENST00000494518 SAMD3Q8N6K7 520 aa14.6□□□□□ -0.07
SKA1-205ENST00000494518 RNPEPQ9H4A4 650 aa14.6□□□□□ -0.07
SKA1-205ENST00000494518 SETD4Q9NVD3 440 aa14.6□□□□□ -0.07
SKA1-205ENST00000494518 RBM8AQ9Y5S9 174 aaKnown RBP14.6□□□□□ -0.07
SKA1-205ENST00000494518 SGSM2O43147 1006 aa14.59□□□□□ -0.07
SKA1-205ENST00000494518 EFCAB14O75071 495 aa14.59□□□□□ -0.07
SKA1-205ENST00000494518 UPP2O95045 317 aa14.59□□□□□ -0.07
SKA1-205ENST00000494518 PLEKHA8P1O95397 391 aa14.59□□□□□ -0.07
SKA1-205ENST00000494518 AMHP03971 560 aa14.59□□□□□ -0.07
SKA1-205ENST00000494518 RXRAP19793 462 aa14.59□□□□□ -0.07
SKA1-205ENST00000494518 TRAF1Q13077 416 aa14.59□□□□□ -0.07
SKA1-205ENST00000494518 COL9A3Q14050 684 aaPredicted RBP14.59□□□□□ -0.07
SKA1-205ENST00000494518 ZNF654Q8IZM8 581 aa14.59□□□□□ -0.07
SKA1-205ENST00000494518 CMTR1Q8N1G2 835 aaKnown RBP14.59□□□□□ -0.07
SKA1-205ENST00000494518 SMARCC2Q8TAQ2 1214 aa14.59□□□□□ -0.07
SKA1-205ENST00000494518 IGDCC4Q8TDY8 1250 aa14.59□□□□□ -0.07
SKA1-205ENST00000494518 GPR20Q99678 358 aa14.59□□□□□ -0.07
SKA1-205ENST00000494518 LY9Q9HBG7 655 aa14.59□□□□□ -0.07
SKA1-205ENST00000494518 FRMPD4Q14CM0 1322 aa14.59□□□□□ -0.07
SKA1-205ENST00000494518 EMSYQ7Z589 1322 aa14.59□□□□□ -0.07
SKA1-205ENST00000494518 hCG_1642624A0A1W2PR95 340 aa14.58□□□□□ -0.08
SKA1-205ENST00000494518 SPATA31C2B4DYI2 1134 aa14.58□□□□□ -0.08
SKA1-205ENST00000494518 ICAM3P32942 547 aa14.58□□□□□ -0.08
SKA1-205ENST00000494518 ARHGAP4P98171 946 aa14.58□□□□□ -0.08
SKA1-205ENST00000494518 NEDD9Q14511 834 aa14.58□□□□□ -0.08
SKA1-205ENST00000494518 PLEKHG4Q58EX7 1191 aa14.58□□□□□ -0.08
SKA1-205ENST00000494518 METTL7BQ6UX53 244 aa14.58□□□□□ -0.08
SKA1-205ENST00000494518 FBXO22Q8NEZ5 403 aa14.58□□□□□ -0.08
SKA1-205ENST00000494518 INPP4AQ96PE3 977 aaPredicted RBP14.58□□□□□ -0.08
SKA1-205ENST00000494518 EPHX3Q9H6B9 360 aa14.58□□□□□ -0.08
SKA1-205ENST00000494518 PKD2L1Q9P0L9 805 aa14.58□□□□□ -0.08
SKA1-205ENST00000494518 RALGAPA2Q2PPJ7 1873 aa14.58□□□□□ -0.08
SKA1-205ENST00000494518 FIBPO43427 364 aa14.57□□□□□ -0.08
SKA1-205ENST00000494518 PRC1O43663 620 aa14.57□□□□□ -0.08
SKA1-205ENST00000494518 HOXC8P31273 242 aa14.57□□□□□ -0.08
SKA1-205ENST00000494518 NFXL1Q6ZNB6 911 aa14.57□□□□□ -0.08
SKA1-205ENST00000494518 CTCFLQ8NI51 663 aaPredicted RBP14.57□□□□□ -0.08
SKA1-205ENST00000494518 LMBR1Q8WVP7 490 aa14.57□□□□□ -0.08
SKA1-205ENST00000494518 SEPT8Q92599 483 aa14.57□□□□□ -0.08
SKA1-205ENST00000494518 KHSRPQ92945 711 aaKnown RBP eCLIP14.57□□□□□ -0.087e-7■■■□□ 16.7
SKA1-205ENST00000494518 CUL5Q93034 780 aa14.57□□□□□ -0.08
SKA1-205ENST00000494518 RRP36Q96EU6 259 aaKnown RBP14.57□□□□□ -0.08
SKA1-205ENST00000494518 SEC63Q9UGP8 760 aaKnown RBP14.57□□□□□ -0.08
SKA1-205ENST00000494518 INSL6Q9Y581 213 aa14.57□□□□□ -0.08
SKA1-205ENST00000494518 MEIS2O14770 477 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms