RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 NOL4O94818 638 aa19.84■□□□□ 0.77
VIM-206ENST00000487938 HSPA1LP34931 641 aa19.84■□□□□ 0.77
VIM-206ENST00000487938 SLC7A5Q01650 507 aa19.84■□□□□ 0.77
VIM-206ENST00000487938 HERC4Q5GLZ8 1057 aaPredicted RBP19.84■□□□□ 0.77
VIM-206ENST00000487938 IQCEQ6IPM2 695 aa19.84■□□□□ 0.77
VIM-206ENST00000487938 PROM2Q8N271 834 aa19.84■□□□□ 0.77
VIM-206ENST00000487938 SPATA4Q8NEY3 305 aa19.84■□□□□ 0.77
VIM-206ENST00000487938 GOLGA5Q8TBA6 731 aa19.84■□□□□ 0.77
VIM-206ENST00000487938 MTMR8Q96EF0 704 aa19.84■□□□□ 0.77
VIM-206ENST00000487938 ALS2CR12Q96Q35 445 aa19.84■□□□□ 0.77
VIM-206ENST00000487938 LSM14BQ9BX40 385 aaKnown RBP19.84■□□□□ 0.77
VIM-206ENST00000487938 DMGDHQ9UI17 866 aaKnown RBP19.84■□□□□ 0.77
VIM-206ENST00000487938 ATF5Q9Y2D1 282 aaPredicted RBP19.84■□□□□ 0.77
VIM-206ENST00000487938 FOCADQ5VW36 1801 aa19.84■□□□□ 0.77
VIM-206ENST00000487938 POLRMTO00411 1230 aaKnown RBP19.83■□□□□ 0.77
VIM-206ENST00000487938 POLR2FP61218 127 aaKnown RBP19.83■□□□□ 0.77
VIM-206ENST00000487938 ENOX2Q16206 610 aaKnown RBP19.83■□□□□ 0.77
VIM-206ENST00000487938 MUM1L1Q5H9M0 696 aa19.83■□□□□ 0.77
VIM-206ENST00000487938 FAM83BQ5T0W9 1011 aa19.83■□□□□ 0.77
VIM-206ENST00000487938 GPBP1Q86WP2 473 aa19.83■□□□□ 0.77
VIM-206ENST00000487938 EP400Q96L91 3159 aa19.83■□□□□ 0.77
VIM-206ENST00000487938 A0A0U1RQG5 324 aaPredicted RBP19.83■□□□□ 0.76
VIM-206ENST00000487938 TLR2O60603 784 aa19.83■□□□□ 0.76
VIM-206ENST00000487938 GGCXP38435 758 aa19.83■□□□□ 0.76
VIM-206ENST00000487938 CACNB3P54284 484 aa19.83■□□□□ 0.76
VIM-206ENST00000487938 SNAP25P60880 206 aa19.83■□□□□ 0.76
VIM-206ENST00000487938 ARID5AQ03989 594 aa19.83■□□□□ 0.76
VIM-206ENST00000487938 QRICH1Q2TAL8 776 aa19.83■□□□□ 0.76
VIM-206ENST00000487938 CCDC65Q8IXS2 484 aa19.83■□□□□ 0.76
VIM-206ENST00000487938 MMGT1Q8N4V1 131 aa19.83■□□□□ 0.76
VIM-206ENST00000487938 NT5C3AQ9H0P0 336 aa19.83■□□□□ 0.76
VIM-206ENST00000487938 PCDHA2Q9Y5H9 948 aa19.83■□□□□ 0.76
VIM-206ENST00000487938 PCDHA1Q9Y5I3 950 aa19.83■□□□□ 0.76
VIM-206ENST00000487938 UBR3Q6ZT12 1888 aa19.82■□□□□ 0.76
VIM-206ENST00000487938 ZC3H4Q9UPT8 1303 aaKnown RBP19.82■□□□□ 0.76
VIM-206ENST00000487938 GCFC2P16383 781 aaKnown RBP19.82■□□□□ 0.76
VIM-206ENST00000487938 PRLRP16471 622 aa19.82■□□□□ 0.76
VIM-206ENST00000487938 AARSP49588 968 aaKnown RBP eCLIP19.82■□□□□ 0.76
VIM-206ENST00000487938 TCP10Q12799 353 aa19.82■□□□□ 0.76
VIM-206ENST00000487938 SEPT2Q15019 361 aa19.82■□□□□ 0.76
VIM-206ENST00000487938 SFMBT2Q5VUG0 894 aa19.82■□□□□ 0.76
VIM-206ENST00000487938 CCDC70Q6NSX1 233 aa19.82■□□□□ 0.76
VIM-206ENST00000487938 APOBEC3HQ6NTF7 200 aaKnown RBP19.82■□□□□ 0.76
VIM-206ENST00000487938 LEKR1Q6ZMV7 388 aa19.82■□□□□ 0.76
VIM-206ENST00000487938 PPP1R3FQ6ZSY5 799 aaPredicted RBP19.82■□□□□ 0.76
VIM-206ENST00000487938 HYOU1Q9Y4L1 999 aa19.82■□□□□ 0.76
VIM-206ENST00000487938 PCDHAC2Q9Y5I4 1007 aa19.82■□□□□ 0.76
VIM-206ENST00000487938 PJA2O43164 708 aa19.82■□□□□ 0.76
VIM-206ENST00000487938 MED24O75448 989 aa19.82■□□□□ 0.76
VIM-206ENST00000487938 HLA-DOAP06340 250 aa19.82■□□□□ 0.76
VIM-206ENST00000487938 MAPK8IP2Q13387 824 aaPredicted RBP19.82■□□□□ 0.76
VIM-206ENST00000487938 SLC9C1Q4G0N8 1177 aa19.82■□□□□ 0.76
VIM-206ENST00000487938 HYIQ5T013 277 aa19.82■□□□□ 0.76
VIM-206ENST00000487938 CCDC181Q5TID7 509 aa19.82■□□□□ 0.76
VIM-206ENST00000487938 SCFD1Q8WVM8 642 aa19.82■□□□□ 0.76
VIM-206ENST00000487938 MS4A14Q96JA4 679 aa19.82■□□□□ 0.76
VIM-206ENST00000487938 QTRT2Q9H974 415 aaKnown RBP19.82■□□□□ 0.76
VIM-206ENST00000487938 EMILIN3Q9NT22 766 aa19.82■□□□□ 0.76
VIM-206ENST00000487938 CEP72Q9P209 647 aa19.82■□□□□ 0.76
VIM-206ENST00000487938 ATP6V0A2Q9Y487 856 aa19.82■□□□□ 0.76
VIM-206ENST00000487938 UTP18Q9Y5J1 556 aaKnown RBP eCLIP19.82■□□□□ 0.76
VIM-206ENST00000487938 KRT18P05783 430 aaKnown RBP19.81■□□□□ 0.76
VIM-206ENST00000487938 CYP11B2P19099 503 aa19.81■□□□□ 0.76
VIM-206ENST00000487938 KLHDC7AQ5VTJ3 777 aa19.81■□□□□ 0.76
VIM-206ENST00000487938 TLR10Q9BXR5 811 aa19.81■□□□□ 0.76
VIM-206ENST00000487938 KCNQ5Q9NR82 932 aa19.81■□□□□ 0.76
VIM-206ENST00000487938 KDM3AQ9Y4C1 1321 aa19.81■□□□□ 0.76
VIM-206ENST00000487938 SSU72P8A0A1W2PR75 194 aa19.81■□□□□ 0.76
VIM-206ENST00000487938 PRPF6O94906 941 aaKnown RBP19.81■□□□□ 0.76
VIM-206ENST00000487938 EEF2P13639 858 aaKnown RBP19.81■□□□□ 0.76
VIM-206ENST00000487938 TCP1P17987 556 aaKnown RBP19.81■□□□□ 0.76
VIM-206ENST00000487938 DNA2P51530 1060 aa19.81■□□□□ 0.76
VIM-206ENST00000487938 ARSHQ5FYA8 562 aa19.81■□□□□ 0.76
VIM-206ENST00000487938 ZFP91Q96JP5 570 aaPredicted RBP19.81■□□□□ 0.76
VIM-206ENST00000487938 NOX5Q96PH1 765 aa19.81■□□□□ 0.76
VIM-206ENST00000487938 EDEM3Q9BZQ6 932 aa19.81■□□□□ 0.76
VIM-206ENST00000487938 DNAJC18Q9H819 358 aa19.81■□□□□ 0.76
VIM-206ENST00000487938 SUGT1Q9Y2Z0 365 aa19.81■□□□□ 0.76
VIM-206ENST00000487938 POTEFA5A3E0 1075 aa19.8■□□□□ 0.76
VIM-206ENST00000487938 G3V3G9 751 aa19.8■□□□□ 0.76
VIM-206ENST00000487938 AGPSO00116 658 aa19.8■□□□□ 0.76
VIM-206ENST00000487938 POTEIP0CG38 1075 aa19.8■□□□□ 0.76
VIM-206ENST00000487938 ADAM9Q13443 819 aa19.8■□□□□ 0.76
VIM-206ENST00000487938 DCAF8Q5TAQ9 597 aa19.8■□□□□ 0.76
VIM-206ENST00000487938 FOXR1Q6PIV2 292 aa19.8■□□□□ 0.76
VIM-206ENST00000487938 POTEGQ6S5H5 508 aa19.8■□□□□ 0.76
VIM-206ENST00000487938 POTEEQ6S8J3 1075 aa19.8■□□□□ 0.76
VIM-206ENST00000487938 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP19.8■□□□□ 0.76
VIM-206ENST00000487938 ANO3Q9BYT9 981 aa19.8■□□□□ 0.76
VIM-206ENST00000487938 KCTD10Q9H3F6 313 aa19.8■□□□□ 0.76
VIM-206ENST00000487938 KLRG2A4D1S0 409 aaPredicted RBP19.79■□□□□ 0.76
VIM-206ENST00000487938 MEIS1O00470 390 aa19.79■□□□□ 0.76
VIM-206ENST00000487938 SERPING1P05155 500 aa19.79■□□□□ 0.76
VIM-206ENST00000487938 PSMC6P62333 389 aa19.79■□□□□ 0.76
VIM-206ENST00000487938 IRX5P78411 483 aaPredicted RBP19.79■□□□□ 0.76
VIM-206ENST00000487938 FOXR2Q6PJQ5 311 aa19.79■□□□□ 0.76
VIM-206ENST00000487938 SND1Q7KZF4 910 aaKnown RBP eCLIP19.79■□□□□ 0.762e-10■■□□□ 12.8
VIM-206ENST00000487938 ZNF572Q7Z3I7 529 aaPredicted RBP19.79■□□□□ 0.76
VIM-206ENST00000487938 TRIM59Q8IWR1 403 aa19.79■□□□□ 0.76
VIM-206ENST00000487938 GOLGA6L1Q8N7Z2 621 aa19.79■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms