RNA–Protein interactions for RNA: ENST00000487026.5

LIME1-206, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LIME1, Length 805 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-206ENST00000487026 NEDD9Q14511 834 aa28.26■■■□□ 2.11
LIME1-206ENST00000487026 TRAF7Q6Q0C0 670 aa28.26■■■□□ 2.11
LIME1-206ENST00000487026 TMTC3Q6ZXV5 915 aa28.26■■■□□ 2.11
LIME1-206ENST00000487026 MICU3Q86XE3 530 aa28.26■■■□□ 2.11
LIME1-206ENST00000487026 TCEANC2Q96MN5 208 aa28.26■■■□□ 2.11
LIME1-206ENST00000487026 ARHGEF15O94989 841 aa28.25■■■□□ 2.11
LIME1-206ENST00000487026 CXCL10P02778 98 aa28.25■■■□□ 2.11
LIME1-206ENST00000487026 SP4Q02446 784 aa28.25■■■□□ 2.11
LIME1-206ENST00000487026 UBE2SQ16763 222 aa28.25■■■□□ 2.11
LIME1-206ENST00000487026 RNF20Q5VTR2 975 aa28.25■■■□□ 2.11
LIME1-206ENST00000487026 METTL7BQ6UX53 244 aa28.25■■■□□ 2.11
LIME1-206ENST00000487026 SGMS1Q86VZ5 419 aa28.25■■■□□ 2.11
LIME1-206ENST00000487026 NEK1Q96PY6 1258 aa28.25■■■□□ 2.11
LIME1-206ENST00000487026 GPR20Q99678 358 aa28.25■■■□□ 2.11
LIME1-206ENST00000487026 SPTBN5Q9NRC6 3674 aaKnown RBP28.24■■■□□ 2.11
LIME1-206ENST00000487026 DOCK5Q9H7D0 1870 aa28.24■■■□□ 2.11
LIME1-206ENST00000487026 C17orf102A2RUQ5 167 aa28.24■■■□□ 2.11
LIME1-206ENST00000487026 SMIM10L2AP0DMW4 78 aa28.24■■■□□ 2.11
LIME1-206ENST00000487026 SMIM10L2BP0DMW5 78 aa28.24■■■□□ 2.11
LIME1-206ENST00000487026 WDR5P61964 334 aaKnown RBP28.24■■■□□ 2.11
LIME1-206ENST00000487026 MBTPS1Q14703 1052 aa28.24■■■□□ 2.11
LIME1-206ENST00000487026 UTP14CQ5TAP6 766 aaKnown RBP28.24■■■□□ 2.11
LIME1-206ENST00000487026 CNKSR3Q6P9H4 555 aa28.24■■■□□ 2.11
LIME1-206ENST00000487026 RASEFQ8IZ41 740 aa28.24■■■□□ 2.11
LIME1-206ENST00000487026 USP26Q9BXU7 913 aa28.24■■■□□ 2.11
LIME1-206ENST00000487026 RNPEPQ9H4A4 650 aa28.24■■■□□ 2.11
LIME1-206ENST00000487026 KIF28PB7ZC32 967 aa28.23■■■□□ 2.11
LIME1-206ENST00000487026 PARNO95453 639 aaKnown RBP28.23■■■□□ 2.11
LIME1-206ENST00000487026 THPOP40225 353 aa28.23■■■□□ 2.11
LIME1-206ENST00000487026 DEFB103AP81534 67 aa28.23■■■□□ 2.11
LIME1-206ENST00000487026 EXOSC10Q01780 885 aaKnown RBP28.23■■■□□ 2.11
LIME1-206ENST00000487026 ADCK5Q3MIX3 580 aa28.23■■■□□ 2.11
LIME1-206ENST00000487026 XRRA1Q6P2D8 792 aa28.23■■■□□ 2.11
LIME1-206ENST00000487026 SYNE3Q6ZMZ3 975 aa28.23■■■□□ 2.11
LIME1-206ENST00000487026 NLRX1Q86UT6 975 aa28.23■■■□□ 2.11
LIME1-206ENST00000487026 SERINC5Q86VE9 423 aa28.23■■■□□ 2.11
LIME1-206ENST00000487026 TRIM50Q86XT4 487 aa28.23■■■□□ 2.11
LIME1-206ENST00000487026 ATP6V0A1Q93050 837 aa28.23■■■□□ 2.11
LIME1-206ENST00000487026 TAP1Q03518 808 aa28.22■■■□□ 2.11
LIME1-206ENST00000487026 HEATR3Q7Z4Q2 680 aa28.22■■■□□ 2.11
LIME1-206ENST00000487026 MICALL1Q8N3F8 863 aa28.22■■■□□ 2.11
LIME1-206ENST00000487026 BRPF3Q9ULD4 1205 aa28.22■■■□□ 2.11
LIME1-206ENST00000487026 EPOPA6NHQ4 379 aa28.21■■■□□ 2.11
LIME1-206ENST00000487026 TREHO43280 583 aa28.21■■■□□ 2.11
LIME1-206ENST00000487026 TLL1O43897 1013 aa28.21■■■□□ 2.11
LIME1-206ENST00000487026 ATP9AO75110 1047 aa28.21■■■□□ 2.11
LIME1-206ENST00000487026 APOA5Q6Q788 366 aa28.21■■■□□ 2.11
LIME1-206ENST00000487026 SPRED2Q7Z698 418 aa28.21■■■□□ 2.11
LIME1-206ENST00000487026 SENP7Q9BQF6 1050 aa28.21■■■□□ 2.11
LIME1-206ENST00000487026 SETD4Q9NVD3 440 aa28.21■■■□□ 2.11
LIME1-206ENST00000487026 CDC45O75419 566 aa28.2■■■□□ 2.1
LIME1-206ENST00000487026 ITGB5P18084 799 aa28.2■■■□□ 2.1
LIME1-206ENST00000487026 DHX32Q7L7V1 743 aaKnown RBP28.2■■■□□ 2.1
LIME1-206ENST00000487026 ARNTL2Q8WYA1 636 aa28.2■■■□□ 2.1
LIME1-206ENST00000487026 ZBED2Q9BTP6 218 aa28.2■■■□□ 2.1
LIME1-206ENST00000487026 PKD2L1Q9P0L9 805 aa28.2■■■□□ 2.1
LIME1-206ENST00000487026 PTPRSQ13332 1948 aa28.2■■■□□ 2.1
LIME1-206ENST00000487026 LCHNA4D1U4 455 aa28.19■■■□□ 2.1
LIME1-206ENST00000487026 RSPH10B2B2RC85 870 aa28.19■■■□□ 2.1
LIME1-206ENST00000487026 RSPH10BP0C881 870 aa28.19■■■□□ 2.1
LIME1-206ENST00000487026 HOXC8P31273 242 aa28.19■■■□□ 2.1
LIME1-206ENST00000487026 IKBKEQ14164 716 aa28.19■■■□□ 2.1
LIME1-206ENST00000487026 PCDHA6Q9UN73 950 aa28.19■■■□□ 2.1
LIME1-206ENST00000487026 PCDHA8Q9Y5H6 950 aa28.19■■■□□ 2.1
LIME1-206ENST00000487026 ABHD14A-ACY1A0A1B0GW23 586 aa28.18■■■□□ 2.1
LIME1-206ENST00000487026 SPDYE3A6NKU9 549 aa28.18■■■□□ 2.1
LIME1-206ENST00000487026 WWC2Q6AWC2 1192 aa28.18■■■□□ 2.1
LIME1-206ENST00000487026 GPRASP2Q96D09 838 aa28.18■■■□□ 2.1
LIME1-206ENST00000487026 LGR5O75473 907 aa28.17■■■□□ 2.1
LIME1-206ENST00000487026 KCNA2P16389 499 aa28.17■■■□□ 2.1
LIME1-206ENST00000487026 TSGA10IPQ3SY00 556 aa28.17■■■□□ 2.1
LIME1-206ENST00000487026 TJAP1Q5JTD0 557 aa28.17■■■□□ 2.1
LIME1-206ENST00000487026 KRT40Q6A162 431 aa28.17■■■□□ 2.1
LIME1-206ENST00000487026 FAM117BQ6P1L5 589 aa28.17■■■□□ 2.1
LIME1-206ENST00000487026 DBF4BQ8NFT6 615 aa28.17■■■□□ 2.1
LIME1-206ENST00000487026 RBM28Q9NW13 759 aaKnown RBP28.17■■■□□ 2.1
LIME1-206ENST00000487026 UBIAD1Q9Y5Z9 338 aa28.17■■■□□ 2.1
LIME1-206ENST00000487026 CNTNAP5Q8WYK1 1306 aa28.17■■■□□ 2.1
LIME1-206ENST00000487026 ZBTB43O43298 467 aa28.16■■■□□ 2.1
LIME1-206ENST00000487026 CTSHP09668 335 aa28.16■■■□□ 2.1
LIME1-206ENST00000487026 RTN1Q16799 776 aa28.16■■■□□ 2.1
LIME1-206ENST00000487026 TYW1BQ6NUM6 668 aa28.16■■■□□ 2.1
LIME1-206ENST00000487026 GIMAP8Q8ND71 665 aaPredicted RBP28.16■■■□□ 2.1
LIME1-206ENST00000487026 OSBPL7Q9BZF2 842 aa28.16■■■□□ 2.1
LIME1-206ENST00000487026 THEGQ9P2T0 379 aa28.16■■■□□ 2.1
LIME1-206ENST00000487026 ZNF215Q9UL58 517 aaPredicted RBP28.16■■■□□ 2.1
LIME1-206ENST00000487026 V9GY48 417 aaPredicted RBP28.16■■■□□ 2.1
LIME1-206ENST00000487026 TRANK1O15050 2925 aa28.16■■■□□ 2.1
LIME1-206ENST00000487026 CPA1P15085 419 aa28.15■■■□□ 2.1
LIME1-206ENST00000487026 TCF7P36402 384 aaPredicted RBP28.15■■■□□ 2.1
LIME1-206ENST00000487026 ARHGAP4P98171 946 aa28.15■■■□□ 2.1
LIME1-206ENST00000487026 FUT2Q10981 343 aa28.15■■■□□ 2.1
LIME1-206ENST00000487026 LIN28BQ6ZN17 250 aaKnown RBP eCLIP28.15■■■□□ 2.1
LIME1-206ENST00000487026 SYMPKQ92797 1274 aaKnown RBP28.15■■■□□ 2.1
LIME1-206ENST00000487026 MTCH2Q9Y6C9 303 aa28.15■■■□□ 2.1
LIME1-206ENST00000487026 EMSYQ7Z589 1322 aa28.15■■■□□ 2.1
LIME1-206ENST00000487026 KLF18A0A0U1RQI7 1052 aa28.14■■■□□ 2.1
LIME1-206ENST00000487026 GSTTP1A0A1W2PQM5 241 aa28.14■■■□□ 2.1
LIME1-206ENST00000487026 GJB5O95377 273 aa28.14■■■□□ 2.1
LIME1-206ENST00000487026 GNAT1P11488 350 aa28.14■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms