RNA–Protein interactions for RNA: ENST00000478169.5

CCM2-210, Transcript of CCM2 scaffold protein, human

TSL 4

Gene CCM2, Length 542 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCM2-210	ENST00000478169	PTCRA	Q6ISU1	281 aa	Predicted RBP	11.21	□□□□□ -0.61
CCM2-210	ENST00000478169	PLEKHM2	Q8IWE5	1019 aa		11.21	□□□□□ -0.61
CCM2-210	ENST00000478169	SMC5	Q8IY18	1101 aa		11.21	□□□□□ -0.61
CCM2-210	ENST00000478169	STAG2	Q8N3U4	1231 aa		11.21	□□□□□ -0.61
CCM2-210	ENST00000478169	SEPT8	Q92599	483 aa		11.21	□□□□□ -0.61
CCM2-210	ENST00000478169	ATP6V0A1	Q93050	837 aa		11.21	□□□□□ -0.61
CCM2-210	ENST00000478169	TOP1MT	Q969P6	601 aa		11.21	□□□□□ -0.61
CCM2-210	ENST00000478169	TUT1	Q9H6E5	874 aa	Known RBP	11.21	□□□□□ -0.61
CCM2-210	ENST00000478169	MLXIP	Q9HAP2	919 aa		11.21	□□□□□ -0.61
CCM2-210	ENST00000478169	COL4A6	Q14031	1691 aa		11.2	□□□□□ -0.62
CCM2-210	ENST00000478169	PALM3	A6NDB9	673 aa	Predicted RBP	11.2	□□□□□ -0.62
CCM2-210	ENST00000478169	GRXCR2	A6NFK2	248 aa		11.2	□□□□□ -0.62
CCM2-210	ENST00000478169	PRR33	A8MZF0	331 aa		11.2	□□□□□ -0.62
CCM2-210	ENST00000478169		H3BNC9	293 aa		11.2	□□□□□ -0.62
CCM2-210	ENST00000478169	PPP1R11	O60927	126 aa	Predicted RBP	11.2	□□□□□ -0.62
CCM2-210	ENST00000478169	ALAD	P13716	330 aa		11.2	□□□□□ -0.62
CCM2-210	ENST00000478169	UBA1	P22314	1058 aa	Known RBP	11.2	□□□□□ -0.62
CCM2-210	ENST00000478169	CCND2	P30279	289 aa		11.2	□□□□□ -0.62
CCM2-210	ENST00000478169	HOXA13	P31271	388 aa	Predicted RBP	11.2	□□□□□ -0.62
CCM2-210	ENST00000478169	SEC23A	Q15436	765 aa		11.2	□□□□□ -0.62
CCM2-210	ENST00000478169	EPC2	Q52LR7	807 aa		11.2	□□□□□ -0.62
CCM2-210	ENST00000478169	TIGD5	Q53EQ6	642 aa		11.2	□□□□□ -0.62
CCM2-210	ENST00000478169	NEK9	Q8TD19	979 aa		11.2	□□□□□ -0.62
CCM2-210	ENST00000478169	USP26	Q9BXU7	913 aa		11.2	□□□□□ -0.62
CCM2-210	ENST00000478169	RNPEP	Q9H4A4	650 aa		11.2	□□□□□ -0.62
CCM2-210	ENST00000478169	MAD2L2	Q9UI95	211 aa		11.2	□□□□□ -0.62
CCM2-210	ENST00000478169	ATG2A	Q2TAZ0	1938 aa		11.19	□□□□□ -0.62
CCM2-210	ENST00000478169	FAM86C2P	A6NEL3	165 aa		11.19	□□□□□ -0.62
CCM2-210	ENST00000478169	GCOM1	H8Y6P7	765 aa	Predicted RBP	11.19	□□□□□ -0.62
CCM2-210	ENST00000478169	TREH	O43280	583 aa		11.19	□□□□□ -0.62
CCM2-210	ENST00000478169	SORBS3	O60504	671 aa		11.19	□□□□□ -0.62
CCM2-210	ENST00000478169	STAM2	O75886	525 aa		11.19	□□□□□ -0.62
CCM2-210	ENST00000478169	LGALS2	P05162	132 aa		11.19	□□□□□ -0.62
CCM2-210	ENST00000478169	POLR2M	P0CAP2	368 aa		11.19	□□□□□ -0.62
CCM2-210	ENST00000478169	SMIM10L2A	P0DMW4	78 aa		11.19	□□□□□ -0.62
CCM2-210	ENST00000478169	SMIM10L2B	P0DMW5	78 aa		11.19	□□□□□ -0.62
CCM2-210	ENST00000478169	GNAT1	P11488	350 aa		11.19	□□□□□ -0.62
CCM2-210	ENST00000478169	IL9	P15248	144 aa		11.19	□□□□□ -0.62
CCM2-210	ENST00000478169	SSTR3	P32745	418 aa	Predicted RBP	11.19	□□□□□ -0.62
CCM2-210	ENST00000478169	ICAM3	P32942	547 aa		11.19	□□□□□ -0.62
CCM2-210	ENST00000478169	NEDD9	Q14511	834 aa		11.19	□□□□□ -0.62
CCM2-210	ENST00000478169	GNPTAB	Q3T906	1256 aa		11.19	□□□□□ -0.62
CCM2-210	ENST00000478169	CHD1L	Q86WJ1	897 aa		11.19	□□□□□ -0.62
CCM2-210	ENST00000478169	IL31RA	Q8NI17	732 aa		11.19	□□□□□ -0.62
CCM2-210	ENST00000478169	APBB2	Q92870	758 aa		11.19	□□□□□ -0.62
CCM2-210	ENST00000478169	YME1L1	Q96TA2	773 aa		11.19	□□□□□ -0.62
CCM2-210	ENST00000478169	RWDD1	Q9H446	243 aa	Predicted RBP	11.19	□□□□□ -0.62
CCM2-210	ENST00000478169	RIOX1	Q9H6W3	641 aa		11.19	□□□□□ -0.62
CCM2-210	ENST00000478169	FAM50B	Q9Y247	325 aa		11.19	□□□□□ -0.62
CCM2-210	ENST00000478169	TTC3	P53804	2025 aa		11.19	□□□□□ -0.62
CCM2-210	ENST00000478169	NOP56	O00567	594 aa	Known RBP	11.18	□□□□□ -0.62
CCM2-210	ENST00000478169	NCK2	O43639	380 aa		11.18	□□□□□ -0.62
CCM2-210	ENST00000478169	GPM6B	Q13491	265 aa		11.18	□□□□□ -0.62
CCM2-210	ENST00000478169	GRM4	Q14833	912 aa		11.18	□□□□□ -0.62
CCM2-210	ENST00000478169	COL19A1	Q14993	1142 aa		11.18	□□□□□ -0.62
CCM2-210	ENST00000478169	METTL7B	Q6UX53	244 aa		11.18	□□□□□ -0.62
CCM2-210	ENST00000478169	FCHSD1	Q86WN1	690 aa		11.18	□□□□□ -0.62
CCM2-210	ENST00000478169	TMEM192	Q8IY95	271 aa		11.18	□□□□□ -0.62
CCM2-210	ENST00000478169	BANK1	Q8NDB2	785 aa		11.18	□□□□□ -0.62
CCM2-210	ENST00000478169	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	11.18	□□□□□ -0.62
CCM2-210	ENST00000478169	PABPC5	Q96DU9	382 aa	Known RBP	11.18	□□□□□ -0.62
CCM2-210	ENST00000478169	PRKAG3	Q9UGI9	489 aa		11.18	□□□□□ -0.62
CCM2-210	ENST00000478169	FRMPD4	Q14CM0	1322 aa		11.17	□□□□□ -0.62
CCM2-210	ENST00000478169	PNMA6F	A0A0J9YX94	578 aa		11.17	□□□□□ -0.62
CCM2-210	ENST00000478169	LOC101059915	A0A1B0GWI6	518 aa	Predicted RBP	11.17	□□□□□ -0.62
CCM2-210	ENST00000478169	SPATA31C2	B4DYI2	1134 aa		11.17	□□□□□ -0.62
CCM2-210	ENST00000478169	UPP2	O95045	317 aa		11.17	□□□□□ -0.62
CCM2-210	ENST00000478169	ADAM17	P78536	824 aa		11.17	□□□□□ -0.62
CCM2-210	ENST00000478169	NUCB1	Q02818	461 aa		11.17	□□□□□ -0.62
CCM2-210	ENST00000478169	FAM26D	Q5JW98	314 aa		11.17	□□□□□ -0.62
CCM2-210	ENST00000478169	B4GALNT3	Q6L9W6	998 aa		11.17	□□□□□ -0.62
CCM2-210	ENST00000478169	HOMER1	Q86YM7	354 aa		11.17	□□□□□ -0.62
CCM2-210	ENST00000478169	INPP4A	Q96PE3	977 aa	Predicted RBP	11.17	□□□□□ -0.62
CCM2-210	ENST00000478169	PIGS	Q96S52	555 aa		11.17	□□□□□ -0.62
CCM2-210	ENST00000478169	GPR20	Q99678	358 aa		11.17	□□□□□ -0.62
CCM2-210	ENST00000478169	SENP7	Q9BQF6	1050 aa		11.17	□□□□□ -0.62
CCM2-210	ENST00000478169	IFIH1	Q9BYX4	1025 aa	Known RBP	11.17	□□□□□ -0.62
CCM2-210	ENST00000478169	NSUN3	Q9H649	340 aa	Known RBP	11.17	□□□□□ -0.62
CCM2-210	ENST00000478169	ZNF215	Q9UL58	517 aa	Predicted RBP	11.17	□□□□□ -0.62
CCM2-210	ENST00000478169	LOXHD1	Q8IVV2	1947 aa		11.17	□□□□□ -0.62
CCM2-210	ENST00000478169	POTEB3	A0JP26	581 aa		11.16	□□□□□ -0.62
CCM2-210	ENST00000478169	C5orf67	F2Z3F1	127 aa		11.16	□□□□□ -0.62
CCM2-210	ENST00000478169		H3BQ06	376 aa	Predicted RBP	11.16	□□□□□ -0.62
CCM2-210	ENST00000478169	FIBP	O43427	364 aa		11.16	□□□□□ -0.62
CCM2-210	ENST00000478169	DCX	O43602	365 aa		11.16	□□□□□ -0.62
CCM2-210	ENST00000478169	RB1	P06400	928 aa		11.16	□□□□□ -0.62
CCM2-210	ENST00000478169	CTSH	P09668	335 aa		11.16	□□□□□ -0.62
CCM2-210	ENST00000478169	MRPS9	P82933	396 aa	Known RBP	11.16	□□□□□ -0.62
CCM2-210	ENST00000478169	TRDN	Q13061	729 aa		11.16	□□□□□ -0.62
CCM2-210	ENST00000478169	CSPP1	Q1MSJ5	1256 aa		11.16	□□□□□ -0.62
CCM2-210	ENST00000478169	SLC35G1	Q2M3R5	365 aa		11.16	□□□□□ -0.62
CCM2-210	ENST00000478169	TCEAL5	Q5H9L2	206 aa		11.16	□□□□□ -0.62
CCM2-210	ENST00000478169	POTEB	Q6S5H4	581 aa		11.16	□□□□□ -0.62
CCM2-210	ENST00000478169	CYB5R4	Q7L1T6	521 aa		11.16	□□□□□ -0.62
CCM2-210	ENST00000478169	CYFIP1	Q7L576	1253 aa		11.16	□□□□□ -0.62
CCM2-210	ENST00000478169	RPAIN	Q86UA6	219 aa		11.16	□□□□□ -0.62
CCM2-210	ENST00000478169	IL17RA	Q96F46	866 aa		11.16	□□□□□ -0.62
CCM2-210	ENST00000478169	ZFP91	Q96JP5	570 aa	Predicted RBP	11.16	□□□□□ -0.62
CCM2-210	ENST00000478169	LMAN2L	Q9H0V9	348 aa		11.16	□□□□□ -0.62
CCM2-210	ENST00000478169	BCAS3	Q9H6U6	928 aa		11.16	□□□□□ -0.62

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