RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 TM6SF1Q9BZW5 370 aa20.55■□□□□ 0.88
UPF3A-203ENST00000474056 EHMT1Q9H9B1 1298 aa20.55■□□□□ 0.88
UPF3A-203ENST00000474056 MTMR10Q9NXD2 777 aa20.55■□□□□ 0.88
UPF3A-203ENST00000474056 PITPNM1O00562 1244 aa20.54■□□□□ 0.88
UPF3A-203ENST00000474056 PRPF3O43395 683 aaKnown RBP20.54■□□□□ 0.88
UPF3A-203ENST00000474056 ATP9AO75110 1047 aa20.54■□□□□ 0.88
UPF3A-203ENST00000474056 CLK2P49760 499 aaKnown RBP20.54■□□□□ 0.88
UPF3A-203ENST00000474056 SP4Q02446 784 aa20.54■□□□□ 0.88
UPF3A-203ENST00000474056 ZNF697Q5TEC3 545 aa20.54■□□□□ 0.88
UPF3A-203ENST00000474056 HERVK_113Q902F9 699 aa20.54■□□□□ 0.88
UPF3A-203ENST00000474056 DHX38Q92620 1227 aaKnown RBP20.54■□□□□ 0.88
UPF3A-203ENST00000474056 FAM161BQ96MY7 647 aa20.54■□□□□ 0.88
UPF3A-203ENST00000474056 LARP6Q9BRS8 491 aaKnown RBP20.54■□□□□ 0.88
UPF3A-203ENST00000474056 NCOA5Q9HCD5 579 aaKnown RBP20.54■□□□□ 0.88
UPF3A-203ENST00000474056 TMEM260Q9NX78 707 aa20.54■□□□□ 0.88
UPF3A-203ENST00000474056 CXXC1Q9P0U4 656 aaPredicted RBP20.54■□□□□ 0.88
UPF3A-203ENST00000474056 PTPRSQ13332 1948 aa20.53■□□□□ 0.88
UPF3A-203ENST00000474056 HSFX4A0A1B0GTS1 333 aaPredicted RBP20.53■□□□□ 0.88
UPF3A-203ENST00000474056 HSFX3A0A1B0GWH4 333 aaPredicted RBP20.53■□□□□ 0.88
UPF3A-203ENST00000474056 FGBP02675 491 aa20.53■□□□□ 0.88
UPF3A-203ENST00000474056 KCNA2P16389 499 aa20.53■□□□□ 0.88
UPF3A-203ENST00000474056 ZNF200P98182 395 aaPredicted RBP20.53■□□□□ 0.88
UPF3A-203ENST00000474056 BFSP2Q13515 415 aa20.53■□□□□ 0.88
UPF3A-203ENST00000474056 HIC1Q14526 733 aa20.53■□□□□ 0.88
UPF3A-203ENST00000474056 OTOP2Q7RTS6 562 aa20.53■□□□□ 0.88
UPF3A-203ENST00000474056 DEFB128Q7Z7B8 93 aa20.53■□□□□ 0.88
UPF3A-203ENST00000474056 RPUSD2Q8IZ73 545 aaKnown RBP20.53■□□□□ 0.88
UPF3A-203ENST00000474056 CDHR1Q96JP9 859 aa20.53■□□□□ 0.88
UPF3A-203ENST00000474056 PKD2L1Q9P0L9 805 aa20.53■□□□□ 0.88
UPF3A-203ENST00000474056 CDH23Q9H251 3354 aa20.52■□□□□ 0.88
UPF3A-203ENST00000474056 H3BRB1 525 aa20.52■□□□□ 0.88
UPF3A-203ENST00000474056 ADAMTS3O15072 1205 aa20.52■□□□□ 0.88
UPF3A-203ENST00000474056 FOSP01100 380 aaPredicted RBP20.52■□□□□ 0.88
UPF3A-203ENST00000474056 IQCF3P0C7M6 154 aa20.52■□□□□ 0.88
UPF3A-203ENST00000474056 AP3B2Q13367 1082 aa20.52■□□□□ 0.88
UPF3A-203ENST00000474056 MTMR1Q13613 665 aa20.52■□□□□ 0.88
UPF3A-203ENST00000474056 TRIM50Q86XT4 487 aa20.52■□□□□ 0.88
UPF3A-203ENST00000474056 TEX2Q8IWB9 1127 aa20.52■□□□□ 0.88
UPF3A-203ENST00000474056 RETREG2Q8NC44 543 aa20.52■□□□□ 0.88
UPF3A-203ENST00000474056 CAGE1Q8TC20 777 aa20.52■□□□□ 0.88
UPF3A-203ENST00000474056 SLC26A6Q9BXS9 759 aa20.52■□□□□ 0.88
UPF3A-203ENST00000474056 RNF26Q9BY78 433 aaPredicted RBP20.52■□□□□ 0.88
UPF3A-203ENST00000474056 GLT8D2Q9H1C3 349 aa20.52■□□□□ 0.88
UPF3A-203ENST00000474056 TUT1Q9H6E5 874 aaKnown RBP20.52■□□□□ 0.88
UPF3A-203ENST00000474056 JADE2Q9NQC1 790 aa20.52■□□□□ 0.88
UPF3A-203ENST00000474056 ESYT2A0FGR8 921 aa20.51■□□□□ 0.87
UPF3A-203ENST00000474056 GRXCR1A8MXD5 290 aa20.51■□□□□ 0.87
UPF3A-203ENST00000474056 IFNAR1P17181 557 aa20.51■□□□□ 0.87
UPF3A-203ENST00000474056 UTP14CQ5TAP6 766 aaKnown RBP20.51■□□□□ 0.87
UPF3A-203ENST00000474056 JAKMIP3Q5VZ66 844 aa20.51■□□□□ 0.87
UPF3A-203ENST00000474056 CCDC155Q8N6L0 562 aa20.51■□□□□ 0.87
UPF3A-203ENST00000474056 GIMAP8Q8ND71 665 aaPredicted RBP20.51■□□□□ 0.87
UPF3A-203ENST00000474056 CYP2W1Q8TAV3 490 aa20.51■□□□□ 0.87
UPF3A-203ENST00000474056 WNT8BQ93098 351 aa20.51■□□□□ 0.87
UPF3A-203ENST00000474056 GUCD1Q96NT3 240 aa20.51■□□□□ 0.87
UPF3A-203ENST00000474056 MXRA8Q9BRK3 442 aa20.51■□□□□ 0.87
UPF3A-203ENST00000474056 TTYH1Q9H313 450 aaPredicted RBP20.51■□□□□ 0.87
UPF3A-203ENST00000474056 PDRG1Q9NUG6 133 aa20.51■□□□□ 0.87
UPF3A-203ENST00000474056 WDR81Q562E7 1941 aa20.51■□□□□ 0.87
UPF3A-203ENST00000474056 PFKMP08237 780 aa20.5■□□□□ 0.87
UPF3A-203ENST00000474056 AKAP17AQ02040 695 aaKnown RBP20.5■□□□□ 0.87
UPF3A-203ENST00000474056 AFAP1L1Q8TED9 768 aa20.5■□□□□ 0.87
UPF3A-203ENST00000474056 ZMYND12Q9H0C1 365 aa20.5■□□□□ 0.87
UPF3A-203ENST00000474056 MTIF3Q9H2K0 278 aaKnown RBP20.5■□□□□ 0.87
UPF3A-203ENST00000474056 COL6A3P12111 3177 aa20.5■□□□□ 0.87
UPF3A-203ENST00000474056 SMIM10L2AP0DMW4 78 aa20.49■□□□□ 0.87
UPF3A-203ENST00000474056 SMIM10L2BP0DMW5 78 aa20.49■□□□□ 0.87
UPF3A-203ENST00000474056 DNAJB2P25686 324 aa20.49■□□□□ 0.87
UPF3A-203ENST00000474056 RFC2P35250 354 aa20.49■□□□□ 0.87
UPF3A-203ENST00000474056 TCF7P36402 384 aaPredicted RBP20.49■□□□□ 0.87
UPF3A-203ENST00000474056 SREBF1P36956 1147 aa20.49■□□□□ 0.87
UPF3A-203ENST00000474056 RBL2Q08999 1139 aa20.49■□□□□ 0.87
UPF3A-203ENST00000474056 STK3Q13188 491 aa20.49■□□□□ 0.87
UPF3A-203ENST00000474056 PTK7Q13308 1070 aa20.49■□□□□ 0.87
UPF3A-203ENST00000474056 TRIM71Q2Q1W2 868 aaKnown RBP20.49■□□□□ 0.87
UPF3A-203ENST00000474056 CCDC12Q8WUD4 166 aaPredicted RBP20.49■□□□□ 0.87
UPF3A-203ENST00000474056 ZNF274Q96GC6 653 aaPredicted RBP20.49■□□□□ 0.87
UPF3A-203ENST00000474056 PBX4Q9BYU1 374 aa20.49■□□□□ 0.87
UPF3A-203ENST00000474056 KCNH7Q9NS40 1196 aa20.49■□□□□ 0.87
UPF3A-203ENST00000474056 MYH9P35579 1960 aaKnown RBP20.48■□□□□ 0.87
UPF3A-203ENST00000474056 GSTTP1A0A1W2PQM5 241 aa20.48■□□□□ 0.87
UPF3A-203ENST00000474056 C17orf102A2RUQ5 167 aa20.48■□□□□ 0.87
UPF3A-203ENST00000474056 ZBBXA8MT70 800 aa20.48■□□□□ 0.87
UPF3A-203ENST00000474056 RBAK-RBAKDNI3L0D1 243 aa20.48■□□□□ 0.87
UPF3A-203ENST00000474056 MAFGO15525 162 aa20.48■□□□□ 0.87
UPF3A-203ENST00000474056 ARP10275 920 aa20.48■□□□□ 0.87
UPF3A-203ENST00000474056 CKBP12277 381 aa20.48■□□□□ 0.87
UPF3A-203ENST00000474056 HOXC8P31273 242 aa20.48■□□□□ 0.87
UPF3A-203ENST00000474056 PBX2P40425 430 aa20.48■□□□□ 0.87
UPF3A-203ENST00000474056 ARHGAP4P98171 946 aa20.48■□□□□ 0.87
UPF3A-203ENST00000474056 CEP55Q53EZ4 464 aa20.48■□□□□ 0.87
UPF3A-203ENST00000474056 LRRC8DQ7L1W4 858 aa20.48■□□□□ 0.87
UPF3A-203ENST00000474056 SEMA6BQ9H3T3 888 aa20.48■□□□□ 0.87
UPF3A-203ENST00000474056 RNPEPQ9H4A4 650 aa20.48■□□□□ 0.87
UPF3A-203ENST00000474056 C6orf50Q9HD87 102 aa20.48■□□□□ 0.87
UPF3A-203ENST00000474056 VPS54Q9P1Q0 977 aa20.48■□□□□ 0.87
UPF3A-203ENST00000474056 MICAL3Q7RTP6 2002 aa20.48■□□□□ 0.87
UPF3A-203ENST00000474056 SELPP16109 830 aa20.47■□□□□ 0.87
UPF3A-203ENST00000474056 GPNMBQ14956 572 aa20.47■□□□□ 0.87
UPF3A-203ENST00000474056 REXO1Q8N1G1 1221 aaKnown RBP20.47■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms